View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1114_high_100 (Length: 257)
Name: NF1114_high_100
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_high_100 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 30 - 239
Target Start/End: Original strand, 39883098 - 39883307
Alignment:
| Q |
30 |
agctttatgttaatatatcgtgattggtctatatcaatgaaacataaagcttgtgatgcatgagattgtgaagatacgaagtagctttggtcctagggta |
129 |
Q |
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| T |
39883098 |
agctttatgttaatatatcgtgattggtctatatcaatgaaacataaagcttgtgatgtatgagattgtgaagatacgaagtagctttggtcctagggta |
39883197 |
T |
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| Q |
130 |
attaaagaagaacattggagtaagttctttggtctcgaactttttgtttggattaaatggaacttgaagtgcatggaaattgttaatataccttgagatt |
229 |
Q |
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| T |
39883198 |
attaaagaagaacattggagtaagttctttggtctcgaactttttgtttggattaaatggaacttgacgtgcaaggaaattgttaatataccttgagatt |
39883297 |
T |
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| Q |
230 |
ggtctatatt |
239 |
Q |
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|||||||||| |
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| T |
39883298 |
ggtctatatt |
39883307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 194
Target Start/End: Complemental strand, 40645543 - 40645441
Alignment:
| Q |
91 |
gagattgtgaagatacgaagtagctttggtcctagggtaattaaagaagaacattggagtaagttctttggtctcgaactttttgtttggattaaatgga |
190 |
Q |
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| T |
40645543 |
gagattgtgaggacactaaggagctttggtca-agggtcataaaagaagaatattggagttagttctccaggctcgatctttttgtttggattgaatgga |
40645445 |
T |
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| Q |
191 |
actt |
194 |
Q |
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|||| |
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| T |
40645444 |
actt |
40645441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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