View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1114_high_101 (Length: 252)

Name: NF1114_high_101
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1114_high_101
NF1114_high_101
[»] chr2 (3 HSPs)
chr2 (1-98)||(40697549-40697644)
chr2 (162-241)||(40697403-40697482)
chr2 (166-230)||(40697252-40697316)


Alignment Details
Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 40697644 - 40697549
Alignment:
Q  1 tcatattttaattatatgatttatttctaagtgtatatatatattatctttacttcttggagtactcctccttgatataaggatttgtgatatcactc 98  Q
    |||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40697644 tcatatgttaattatatgatttatttctaagtgtatatatat--tatctttacttcttggagtactcctccttgatataaggatttgtgatatcactc 40697549  T

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Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 162 - 241
Target Start/End: Complemental strand, 40697482 - 40697403
Alignment:
Q  162 cttctcttcagtatggagctgattgtcacaatttagtgtaatctataattggttttgaactgttgtaactatttgtctgt 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40697482 cttctcttcagtatggagctgattgtcacaatttagtgtaatctataattggttttgaactgttgtaactatttgtctgt 40697403  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 40697316 - 40697252
Alignment:
Q  166 tcttcagtatggagctgattgtcacaatttagtgtaatctataattggttttgaactgttgtaac 230  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||    
T  40697316 tctttagtaaggagctgattgtcacaatttagtgtaatctataattgttttagaattgttgtaac 40697252  T

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