View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1114_high_104 (Length: 251)
Name: NF1114_high_104
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_high_104 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 30 - 251
Target Start/End: Original strand, 2658583 - 2658804
Alignment:
| Q |
30 |
aaagcatgcacaagtattagtgtttatgaattgttggttgttgggggtgaaagtactcgcaattatgcatgaatatcgatttctagttgtaaacaatagc |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2658583 |
aaagcatgcacaagtattagtgtttatgaattgttggttgttgggggtgaaaatactcgcaattatgcatgaatatcgatttctagttgtaaacaatagc |
2658682 |
T |
|
| Q |
130 |
ccttatttgtcatctttggaaaattggatcttctcgggattagtctgaaaatctgtctagtatgtacattttaatctcttaagtttgtgtaagggggtcc |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2658683 |
ccttatttgtcatctttggaaaattggatcttctcgggattagtctgaaaatctgtctagtatgtacattttaatctcttaagtttgtgtaagggggtcc |
2658782 |
T |
|
| Q |
230 |
cttttcctaatctgcagtcagc |
251 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
2658783 |
cttttcctaatctgcagtcagc |
2658804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University