View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1114_high_11 (Length: 542)
Name: NF1114_high_11
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 204 - 513
Target Start/End: Original strand, 33327377 - 33327686
Alignment:
| Q |
204 |
atcagaatcatcaaccacaaacctctacctatacggtggttgcacacaacaaatgtacacaccaaactcaccttacgagtcaaacctaaattcactcctc |
303 |
Q |
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| T |
33327377 |
atcagaatcatcaaccacaaacctctacctatacggtggttgcacacaacaaatgtacacaccaaactcaccctacgagtcaaacctaaattcactcctc |
33327476 |
T |
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| Q |
304 |
acttcactagtcaactcagcaacatactcatcctacaacaacttcaccgtcctagggtccacccaacaagacataatctatggcctatatcaatgccgtg |
403 |
Q |
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| T |
33327477 |
acttcactagtcaattcagcaacatactcatcctacaacaacttcaccgtcctagggtccacccaacaagacataatctatggcctatatcaatgccgtg |
33327576 |
T |
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| Q |
404 |
gcgacctcgctatgccggactgtgcctcctgtgtcgcacgcgctgtcacacgtgccggtgacatgtgccgcgacacgtgcggaggcacagtccagctcga |
503 |
Q |
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| T |
33327577 |
gcgacctcgctatgccggactgtgcctcctgtgtcgcacgcgctgtcacacgtgccggtgacatgtgccgcgacacgtgcggaggcacagtccagctcga |
33327676 |
T |
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| Q |
504 |
cggttgtttg |
513 |
Q |
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|||||||||| |
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| T |
33327677 |
cggttgtttg |
33327686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 74 - 169
Target Start/End: Original strand, 33327229 - 33327342
Alignment:
| Q |
74 |
atcatagggtatcacatcacatattctatatgcatataatataaccta------------------ctctcaaccaataacaacaacaaaaaatggtgag |
155 |
Q |
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| T |
33327229 |
atcatagggtatcacatcacatattctatatgcatataatataacatattgcatacatattacatactctcaaccaataacaacaacaaaaaatggtgag |
33327328 |
T |
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| Q |
156 |
attcttcaaaatca |
169 |
Q |
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| T |
33327329 |
attcttcaaaatca |
33327342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 277 - 351
Target Start/End: Original strand, 29527360 - 29527434
Alignment:
| Q |
277 |
tacgagtcaaacctaaattcactcctcacttcactagtcaactcagcaacatactcatcctacaacaacttcacc |
351 |
Q |
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||||| || |||||||| ||||||||||| || ||| ||||||||||||| ||| |||||||||| ||||||||| |
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| T |
29527360 |
tacgaatccaacctaaactcactcctcacatccctaatcaactcagcaacctacacatcctacaataacttcacc |
29527434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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