View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1114_high_12 (Length: 529)
Name: NF1114_high_12
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 30 - 417
Target Start/End: Original strand, 43182701 - 43183083
Alignment:
| Q |
30 |
aaatattcttgtggatatctca--gacatcgagttgcttcgagattttgaatgtgttgtaaacttgttgaacggtttaagtgatccctacaattttgtta |
127 |
Q |
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| T |
43182701 |
aaatattcttgtggatatctcaaagacatcgagttgcttcgagattttgaatgtgttgtaaacttgttgaatggtttaagtgatccctacaattttgtta |
43182800 |
T |
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| Q |
128 |
aatcacaaattctacgtatggaactttggcactgctaatgatgatgccaaaattcttttcaactctactgaaagaccttggttccctacacagagtggaa |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43182801 |
aatcacaaattctacgtatggaactttggcactgctaatgatgatgccaaaattcttttcaactctactgaaagaccttggttccctacacagagtggaa |
43182900 |
T |
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| Q |
228 |
gatcaattgttatggtcattgcaataatggaaattaaaaggtcgtggtcctcttgggacaattctcattttgcaacaagctaggtcacattgtggaacaa |
327 |
Q |
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|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43182901 |
gatcaa--gttatggtcattgcaataatgg-----aaaaggtcgtggtcctcttgggacaattctcattttgcaacaagctaggtcacattgtggaacaa |
43182993 |
T |
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| Q |
328 |
tgttattctaagcatggtacaagccaaaaaattcggattatatcaattataataccatttatgatgataatgtaaattccactgctctta |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
43182994 |
tgttattctaagcatggtacaagccaaaaaattcggattatatcaattataatactatttatgatgataatgtaaattccactgctctta |
43183083 |
T |
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