View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1114_high_128 (Length: 202)
Name: NF1114_high_128
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_high_128 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 24 - 171
Target Start/End: Original strand, 33885833 - 33885980
Alignment:
| Q |
24 |
caaacaaccttgtttgattcttttcttttttgtgtgactctttaatgcattcttaagtgtagctgattttgaatattgtggacaatttctattttacagc |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33885833 |
caaacaaccttgtttgattcttttcttttttgtgtgactctttaatgcattcttaagtgtagctgattttgaatattgtggacaatttctattttacagc |
33885932 |
T |
|
| Q |
124 |
cactggtgaaaactgcaagggagacccttatgagaatgttatattctt |
171 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33885933 |
cactggtgaaaactgcaagggagacccttatgagaatgttatattctt |
33885980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University