View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1114_high_13 (Length: 513)

Name: NF1114_high_13
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1114_high_13
NF1114_high_13
[»] chr3 (2 HSPs)
chr3 (75-346)||(55383286-55383557)
chr3 (344-418)||(19341907-19341979)
[»] chr4 (2 HSPs)
chr4 (351-508)||(53730768-53730925)
chr4 (347-426)||(53731276-53731353)
[»] chr2 (5 HSPs)
chr2 (4-82)||(33025923-33026000)
chr2 (436-513)||(596765-596844)
chr2 (4-82)||(33019525-33019603)
chr2 (346-426)||(597190-597268)
chr2 (4-82)||(33037419-33037497)
[»] chr8 (2 HSPs)
chr8 (346-426)||(26936796-26936874)
chr8 (379-513)||(26937217-26937344)


Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 75 - 346
Target Start/End: Original strand, 55383286 - 55383557
Alignment:
Q  75 taaaaaaccaaatgaatgcgatgtgaggagcggtgataatatagatatagagaaagagaaagggagactaaccgggagaatgacggcgggtcgatagtta 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  55383286 taaaaaaccaaatgaatgcgatgtgaggagcggtgataatatagatatagagaaagagaaagagagactaaccgggagaatgacggcgggtcgatagtta 55383385  T
Q  175 ttggggnnnnnnnnnnnnnnnnnnnnnngcagtgagcatttggatggaattggagaggctgacatccattttgctccacaagttaacattactgctcgct 274  Q
    |||| |                      || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55383386 ttggtggaagaagatgaagaagaagaaggccgtgagcatttggatggaattggagaggctgacatccattttgctccacaagttaacattactgctcgct 55383485  T
Q  275 cactctgcttcccttacttcctctccacccatttctttgcattctctttctattctataaataaataagtaa 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55383486 cactctgcttcccttacttcctctccacccatttctttgcattctctttctattctataaataaataagtaa 55383557  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 344 - 418
Target Start/End: Original strand, 19341907 - 19341979
Alignment:
Q  344 taagagtttaattgtggtggactgacggtgtaaagaagaactttacatagtcggccaataacattttgccacata 418  Q
    ||||||||||||||||||| |||||| |||||||  ||||||||||| |||| ||||||||||||||||||||||    
T  19341907 taagagtttaattgtggtgcactgactgtgtaaa--agaactttacacagtcagccaataacattttgccacata 19341979  T

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Target: chr4 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 351 - 508
Target Start/End: Original strand, 53730768 - 53730925
Alignment:
Q  351 ttaattgtggtggactgacggtgtaaagaagaactttacatagtcggccaataacattttgccacataatctttttnnnnnnnnntgttaatttattcaa 450  Q
    |||||||||||| |||||| |||||||  ||||||||||| |||  ||||||||  |||| | |||||||| ||||         |||||||||||||||    
T  53730768 ttaattgtggtgcactgaccgtgtaaa--agaactttacacagttagccaataaattttttcaacataatcctttttaaaaaaaatgttaatttattcaa 53730865  T
Q  451 taaaaggtaaattctgaaggtgtgcctctccacgttcttgtc--agttgtgtcgttactc 508  Q
    ||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||    
T  53730866 taaaaggtaaattctgaaggtgtgcctctccacgttcttgtctttgttgtgtcgttactc 53730925  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 347 - 426
Target Start/End: Complemental strand, 53731353 - 53731276
Alignment:
Q  347 gagtttaattgtggtggactgacggtgtaaagaagaactttacatagtcggccaataacattttgccacataatcttttt 426  Q
    |||||||||||||||| |||||| |||||||  ||||||||||| ||||  |||||||||||||||||||||||| ||||    
T  53731353 gagtttaattgtggtgcactgactgtgtaaa--agaactttacacagtcaaccaataacattttgccacataatcctttt 53731276  T

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Target: chr2 (Bit Score: 59; Significance: 9e-25; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 33025923 - 33026000
Alignment:
Q  4 gtaaaactcctcattcaacttcgatgcctgtgcaagtcattcaattcgttagtttctcatcccaaattcgctaaaaaac 82  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||| ||||||    
T  33025923 gtaaaactcctcattcaacttcgatgcctatgcaagtcattcaattcgttagtttctgat-ccaaattcgcttaaaaac 33026000  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 436 - 513
Target Start/End: Original strand, 596765 - 596844
Alignment:
Q  436 tgttaatttattcaataaaaggtaaattctgaaggtgtgcctctccacgttcttgtc--agttgtgtcgttactctcccc 513  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||| ||||    
T  596765 tgttaatttatacaataaaaggtaaattctgaaggtgtgcctctccacgttcttgtctttgttgtgtcgttactcccccc 596844  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 33019525 - 33019603
Alignment:
Q  4 gtaaaactcctcattcaacttcgatgcctgtgcaagtcattcaattcgttagtttctcatcccaaattcgctaaaaaac 82  Q
    |||||| |||| ||||||||||||||||| ||||||||| ||||||| ||||||||| |||| ||||| ||||||||||    
T  33019525 gtaaaaatccttattcaacttcgatgcctctgcaagtcagtcaattcattagtttctgatccaaaatttgctaaaaaac 33019603  T

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Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 346 - 426
Target Start/End: Complemental strand, 597268 - 597190
Alignment:
Q  346 agagtttaattgtggtggactgacggtgtaaagaagaactttacatagtcggccaataacattttgccacataatcttttt 426  Q
    ||||||||||||||||| |||||| |||||||  ||||||||||| |||| | ||||||||||||||||||||||| ||||    
T  597268 agagtttaattgtggtgcactgactgtgtaaa--agaactttacacagtcagtcaataacattttgccacataatcctttt 597190  T

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Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 33037419 - 33037497
Alignment:
Q  4 gtaaaactcctcattcaacttcgatgcctgtgcaagtcattcaattcgttagtttctcatcccaaattcgctaaaaaac 82  Q
    |||||||||||||||||||||||||| || || |||||  ||||||||||| ||||| |||| ||||||||||| ||||    
T  33037419 gtaaaactcctcattcaacttcgatgtctctgtaagtctatcaattcgttaatttctgatcctaaattcgctaagaaac 33037497  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 346 - 426
Target Start/End: Original strand, 26936796 - 26936874
Alignment:
Q  346 agagtttaattgtggtggactgacggtgtaaagaagaactttacatagtcggccaataacattttgccacataatcttttt 426  Q
    ||||||||||||||||| |||||| |||||||  ||||||||||| |||| ||||||||||||||||||||||||| ||||    
T  26936796 agagtttaattgtggtgcactgactgtgtaaa--agaactttacacagtcagccaataacattttgccacataatcctttt 26936874  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 379 - 513
Target Start/End: Complemental strand, 26937344 - 26937217
Alignment:
Q  379 aagaactttacatagtcggccaataacattttgccacataatctttttnnnnnnnnntgttaatttattcaataaaaggtaaattctgaaggtgtgcctc 478  Q
    ||||| |||||| |||| |||||||| |||||||||||||||| ||||         |||||||||||||||||||||||||        ||||||||||    
T  26937344 aagaaatttacacagtcagccaataaaattttgccacataatcctttttaaaaaaa-tgttaatttattcaataaaaggtaa--------ggtgtgcctc 26937254  T
Q  479 tccacgttcttgtc--agttgtgtcgttactctcccc 513  Q
    ||||||||||||||   ||||||||||||||| ||||    
T  26937253 tccacgttcttgtctttgttgtgtcgttactcccccc 26937217  T

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