View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1114_high_15 (Length: 503)

Name: NF1114_high_15
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1114_high_15
NF1114_high_15
[»] chr6 (3 HSPs)
chr6 (97-499)||(13778344-13778746)
chr6 (104-196)||(20246701-20246793)
chr6 (104-196)||(22140685-22140777)
[»] chr8 (2 HSPs)
chr8 (154-492)||(24969908-24970246)
chr8 (101-367)||(24969641-24969892)
[»] scaffold0183 (2 HSPs)
scaffold0183 (96-296)||(12737-12937)
scaffold0183 (291-495)||(14515-14719)
[»] chr5 (2 HSPs)
chr5 (143-268)||(23659978-23660103)
chr5 (143-268)||(23798467-23798592)
[»] chr1 (1 HSPs)
chr1 (164-267)||(22507849-22507952)
[»] chr7 (1 HSPs)
chr7 (166-267)||(18454009-18454110)


Alignment Details
Target: chr6 (Bit Score: 391; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 97 - 499
Target Start/End: Complemental strand, 13778746 - 13778344
Alignment:
Q  97 aaactgtggcaacaaatttacagcagcaccaccatcgatgagcactttgttaatcccaacattattgattttagcttggataaacaaaggcttaagatga 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13778746 aaactgtggcaacaaatttacagcagcaccaccatcgatgagcactttgttaatcccaacattattgattttagcttggataaacaaaggcttaagatga 13778647  T
Q  197 cttttcatgtgatgatcaagtttctcaaacattgcctgttcaccttcgacacaaccactatccataacataagagcacagtggtttgtgaaccgccatct 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  13778646 cttttcatgtgatgatcaagtttctcaaacattgcctgttcaccttcgacacaaccactatccataacataatagcacagtggtttgtgaaccgccatct 13778547  T
Q  297 cttcagtgaaatctccctcgtcctcagtaatttctgatgttacatcatattcgactaggagaattgacacaacgcaaataacatcaatatcagctccaga 396  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13778546 cttgagtgaaatctccctcgtcctcagtaatttctgatgttacatcatattcgactaggagaattgacacaacgcaaataacatcaatatcagctccaga 13778447  T
Q  397 actgtcaaagttcgatgtcatttcggcatcgacttttgtgaagttttctttaactacagaaagaggacgaaaaatcctttcagtggcatgttttcttatc 496  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13778446 actgtcaaagttcgatgtcatttcggcatccacttttgtgaagttttctttaactacagaaagaggacgaaaaatcctttcagtggcatgttttcttatc 13778347  T
Q  497 act 499  Q
    |||    
T  13778346 act 13778344  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 104 - 196
Target Start/End: Original strand, 20246701 - 20246793
Alignment:
Q  104 ggcaacaaatttacagcagcaccaccatcgatgagcactttgttaatcccaacattattgattttagcttggataaacaaaggcttaagatga 196  Q
    |||| ||||||||||||||||||||||||||  | ||||||||| || ||||  | ||  | ||| |||||||| |||||||  |||||||||    
T  20246701 ggcatcaaatttacagcagcaccaccatcgaccaacactttgttgataccaatctcatccactttggcttggatgaacaaagttttaagatga 20246793  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 104 - 196
Target Start/End: Original strand, 22140685 - 22140777
Alignment:
Q  104 ggcaacaaatttacagcagcaccaccatcgatgagcactttgttaatcccaacattattgattttagcttggataaacaaaggcttaagatga 196  Q
    |||| ||||||||||||||||||||||||||  | ||||||||| || ||||  | ||  | ||| |||||||| |||||||  |||||||||    
T  22140685 ggcatcaaatttacagcagcaccaccatcgaccaacactttgttgataccaatctcatccactttggcttggatgaacaaagttttaagatga 22140777  T

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Target: chr8 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 154 - 492
Target Start/End: Original strand, 24969908 - 24970246
Alignment:
Q  154 aacattattgattttagcttggataaacaaaggcttaagatgacttttcatgtgatgatcaagtttctcaaacattgcctgttcaccttcgacacaacca 253  Q
    |||||| ||||||||||||||||||||||  ||||| |||||||||||||||||||||| | |||||| |||||| || |||||||||||||||||||||    
T  24969908 aacattgttgattttagcttggataaacatgggcttgagatgacttttcatgtgatgattaggtttcttaaacatggcttgttcaccttcgacacaacca 24970007  T
Q  254 ctatccataacataagagcacagtggtttgtgaaccgccatctcttcagtgaaatctccctcgtcctcagtaatttctgatgttacatcatattcgacta 353  Q
     | |||||||| ||| ||||||||||||| ||||| | ||| || |||||||||||||||| ||| | ||| |||||||||||||| |||||||| |||     
T  24970008 ttgtccataacgtaatagcacagtggtttatgaacagtcatttcctcagtgaaatctcccttgtctttagtgatttctgatgttacgtcatattcaactg 24970107  T
Q  354 ggagaattgacacaacgcaaataacatcaatatcagctccagaactgtcaaagttcgatgtcatttcggcatcgacttttgtgaagttttctttaactac 453  Q
    |||||||||||| | |||| || || || | ||||||| | |||||   ||||||||| ||||||||| ||||  ||||||  |  |  ||||| |||||    
T  24970108 ggagaattgacagagcgcagatgacgtcgaaatcagcttctgaactagtaaagttcgacgtcatttcgacatcatcttttgctagatcctcttttactac 24970207  T
Q  454 agaaagaggacgaaaaatcctttcagtggcatgttttct 492  Q
     ||||||||| || |||| |||||||||||| |||||||    
T  24970208 ggaaagaggaggataaattctttcagtggcaggttttct 24970246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 101 - 367
Target Start/End: Original strand, 24969641 - 24969892
Alignment:
Q  101 tgtggcaacaaatttacagcagcaccaccatcgatgagcactttg-ttaatcccaacattattgattttagcttggataaacaaaggcttaagatgactt 199  Q
    |||||||||||||||||||||||||||| |||||  ||||| ||| |||  ||||||||| ||||||||||||||||||||||   | || |||||||||    
T  24969641 tgtggcaacaaatttacagcagcaccacaatcgacaagcacattgtttacccccaacattgttgattttagcttggataaacatgagtttgagatgactt 24969740  T
Q  200 ttcatgtgatgatcaagtttctcaaacattgcctgttcaccttcgacacaaccactatccataacataagagcacagtggtttgtgaaccgccatctctt 299  Q
    ||||||||||||| | ||||||||||                | |||||||||| | |||||||| ||| ||||||||||||| ||||| | ||| || |    
T  24969741 ttcatgtgatgattaggtttctcaaa----------------tggacacaaccattgtccataacgtaatagcacagtggtttatgaacagtcatttcct 24969824  T
Q  300 cagtgaaatctccctcgtcctcagtaatttctgatgttacatcatattcgactaggagaattgacaca 367  Q
    ||||||||||||||| ||| | ||| ||||||||| |||| |||||||| | | ||||||||||||||    
T  24969825 cagtgaaatctcccttgtctttagtgatttctgattttacgtcatattcaattgggagaattgacaca 24969892  T

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Target: scaffold0183 (Bit Score: 125; Significance: 4e-64; HSPs: 2)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 96 - 296
Target Start/End: Original strand, 12737 - 12937
Alignment:
Q  96 aaaactgtggcaacaaatttacagcagcaccaccatcgatgagcactttgttaatcccaacattattgattttagcttggataaacaaaggcttaagatg 195  Q
    |||||| ||||| ||||||||||||| || ||||||| ||  | |||||||| ||||||| || ||||||||||||||||||||||||||||||||||||    
T  12737 aaaactatggcagcaaatttacagcaacaacaccatcaatacgtactttgttgatcccaatatcattgattttagcttggataaacaaaggcttaagatg 12836  T
Q  196 acttttcatgtgatgatcaagtttctcaaacattgcctgttcaccttcgacacaaccactatccataacataagagcacagtggtttgtgaaccgccatc 295  Q
    ||||||||||| ||||||| |||||||||||||||| |||||||||| |||||||||  |||||||||||||| |||| |||||||||||||||||||||    
T  12837 acttttcatgtaatgatcaggtttctcaaacattgcatgttcacctttgacacaaccgttatccataacataatagcatagtggtttgtgaaccgccatc 12936  T
Q  296 t 296  Q
    |    
T  12937 t 12937  T

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Target: scaffold0183; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 291 - 495
Target Start/End: Original strand, 14515 - 14719
Alignment:
Q  291 ccatctcttcagtgaaatctccctcgtcctcagtaatttctgatgttacatcatattcgactaggagaattgacacaacgcaaataacatcaatatcagc 390  Q
    ||||||||| |||||||||||||||||| |||||||||| |||||||| |||||| |||||| ||| |||||||||||||||||||||||| | ||| |     
T  14515 ccatctctttagtgaaatctccctcgtcttcagtaatttatgatgttagatcatactcgacttggataattgacacaacgcaaataacatcgaaatctgg 14614  T
Q  391 tccagaactgtcaaagttcgatgtcatttcggcatcgacttttgtgaagttttctttaactacagaaagaggacgaaaaatcctttcagtggcatgtttt 490  Q
    | ||||||| |  |||||||||||||| ||  || |  ||||||| ||||||||||| | |||||||||| || |||||||||||| ||||| | |||||    
T  14615 ttcagaactattgaagttcgatgtcatgtcatcaccctcttttgtaaagttttcttttattacagaaagatgaggaaaaatccttttagtggtaggtttt 14714  T
Q  491 cttat 495  Q
    |||||    
T  14715 cttat 14719  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 143 - 268
Target Start/End: Complemental strand, 23660103 - 23659978
Alignment:
Q  143 ttgttaatcccaacattattgattttagcttggataaacaaaggcttaagatgacttttcatgtgatgatcaagtttctcaaacattgcctgttcacctt 242  Q
    ||||| || ||||||| ||  |||||||||||||| ||||||||||| || |||  || |||||||| |||| || | || ||||| ||||| |  ||||    
T  23660103 ttgtttattccaacatcatcaattttagcttggatgaacaaaggcttgaggtgatgttgcatgtgataatcaggtctttcgaacatagcctgctggcctt 23660004  T
Q  243 cgacacaaccactatccataacataa 268  Q
    | ||||||||| ||||||| ||||||    
T  23660003 caacacaaccattatccatcacataa 23659978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 143 - 268
Target Start/End: Original strand, 23798467 - 23798592
Alignment:
Q  143 ttgttaatcccaacattattgattttagcttggataaacaaaggcttaagatgacttttcatgtgatgatcaagtttctcaaacattgcctgttcacctt 242  Q
    ||||| || ||||||| ||  |||||||||||||| ||||||||||| || |||  || |||||||| |||| || | || ||||| ||||| |  ||||    
T  23798467 ttgtttattccaacatcatcaattttagcttggatgaacaaaggcttgaggtgatgttgcatgtgataatcaggtctttcgaacatagcctgctggcctt 23798566  T
Q  243 cgacacaaccactatccataacataa 268  Q
    | ||||||||| ||||||| ||||||    
T  23798567 caacacaaccattatccatcacataa 23798592  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 267
Target Start/End: Original strand, 22507849 - 22507952
Alignment:
Q  164 attttagcttggataaacaaaggcttaagatgacttttcatgtgatgatcaagtttctcaaacattgcctgttcaccttcgacacaaccactatccataa 263  Q
    ||||| ||||||||||||| ||| || |||||||| ||||| |||| |||| || |||| ||||| || ||||  ||||||||||| | | ||| |||||    
T  22507849 attttggcttggataaacagaggtttgagatgactattcatatgataatcaggtctctcgaacatagcatgttggccttcgacacatcaattattcataa 22507948  T
Q  264 cata 267  Q
    ||||    
T  22507949 cata 22507952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 267
Target Start/End: Complemental strand, 18454110 - 18454009
Alignment:
Q  166 tttagcttggataaacaaaggcttaagatgacttttcatgtgatgatcaagtttctcaaacattgcctgttcaccttcgacacaaccactatccataaca 265  Q
    |||||| | |||||||| ||| || |||||| | ||||| || | |||| || |||||||||| || ||||  ||||||||||||||| ||| |||||||    
T  18454110 tttagccttgataaacagaggtttgagatgaatcttcatatggtaatcaggtctctcaaacatagcatgttggccttcgacacaaccattattcataaca 18454011  T
Q  266 ta 267  Q
    ||    
T  18454010 ta 18454009  T

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