View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1114_high_18 (Length: 491)
Name: NF1114_high_18
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 411; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 481
Target Start/End: Original strand, 1522027 - 1522504
Alignment:
| Q |
1 |
atgactaaaccattgttatatatattacctccaaaa-aatccattattatattaggtcattatcccaagactctaaacaccactcgtgagtgttccaata |
99 |
Q |
| |
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||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1522027 |
atgactaaaccattgttatat----tacctctaaaaaaatccattattatattaggtcattatcccaagactctaaacaccactcgtgagtgttccaata |
1522122 |
T |
|
| Q |
100 |
gacatttacagtagaattaacccctaacctcctaaatcttttccaatcacgaagggttttctttaaatcagccaccttggcagtgatgctcctacaacaa |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1522123 |
gacatttacagtagaattaacccctaacctcctaaatcttttccaatcacgaagggttttctttaaatcagccaccttggcagtgatgctcctacaacaa |
1522222 |
T |
|
| Q |
200 |
ttggcatggacagtggttacagccctaaaatctttactatcttggcaaaatccactaaaatagagggtatccaagaaccttgccttgattcccaaatctc |
299 |
Q |
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| T |
1522223 |
ttggcatggacagtggttacagccctaaaatctttactatcttggcaaaatccactaaaatagagggtatccaagaaccttgccttgattcccaaatctc |
1522322 |
T |
|
| Q |
300 |
gaaatataccacctttaatgaggtcctcaagcacatcttgctccnnnnnnnctgtgaaattatctttcattccataccatgtctcaaacaaagatatggt |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1522323 |
gaaatataccacctttaatgaggtcctcaagcacatcttgctcctttttttctgtgaaattatctttcattccataccatgtctcaaacaaagatatggt |
1522422 |
T |
|
| Q |
400 |
cttgttgtttgatctcacaaagaaaaatccagtattgactcgannnnnnnctgaccaaggatcaccaaagtattcgtctgtg |
481 |
Q |
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| T |
1522423 |
cttgttgtttgatctcacaaagaaaaatccagtattgactcgatttttttctgaccaaggatcaccaaagtattcgtctgtg |
1522504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 75 - 437
Target Start/End: Original strand, 1512532 - 1512894
Alignment:
| Q |
75 |
aacaccactcgtgagtgttccaatagacatttacagtagaattaacccctaacctcctaaatcttttccaatcacgaagggttttctttaaatcagccac |
174 |
Q |
| |
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|||||||||| ||| | |||||| || ||| ||| |||| ||| || |||||||||||||| |||||||||||||||||| ||| ||||| ||||| |
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| T |
1512532 |
aacaccactcatgacttgtccaattgatattcacattagagttagcctctaacctcctaaattgcttccaatcacgaagggttgccttcaaatcggccac |
1512631 |
T |
|
| Q |
175 |
cttggcagtgatgctcctacaacaattggcatggacagtggttacagccctaaaatctttactatcttggcaaaatccactaaaatagagggtatccaag |
274 |
Q |
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| T |
1512632 |
cttcgcagtgatgcttcgacaacagttggcatgaatgatcgttactgccctaacatctttactgtcttggcaaaatccactaaaataaagggtatccaag |
1512731 |
T |
|
| Q |
275 |
aaccttgccttgattcccaaatctcgaaatataccacctttaatgaggtcctcaagcacatcttgctccnnnnnnnctgtgaaattatctttcattccat |
374 |
Q |
| |
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|| || |||||| || |||| || |||||||||| ||| ||||||||| |||||||||||||||| ||||| |||| |||||| |||||| |
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| T |
1512732 |
aatctaaccttgagccctaaatgtccaaatataccagcttcaatgaggtcaataagcacatcttgctcctttttacctgtggaattgtctttctttccat |
1512831 |
T |
|
| Q |
375 |
accatgtctcaaacaaagatatggtcttgttgtttgatctcacaaagaaaaatccagtattga |
437 |
Q |
| |
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||||||| |||||||| ||||||||||| || ||||| ||||||||||||||||||||||||| |
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| T |
1512832 |
accatgtttcaaacaaggatatggtctttttatttgacctcacaaagaaaaatccagtattga |
1512894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 123 - 435
Target Start/End: Original strand, 1517783 - 1518095
Alignment:
| Q |
123 |
ctaacctcctaaatcttttccaatcacgaagggttttctttaaatcagccaccttggcagtgatgctcctacaacaattggcatggacagtggttacagc |
222 |
Q |
| |
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|||||||||||||| ||||||||| ||||| | |||||||||||||||||| |||| ||||| | ||||||||||||||| |||||||| || | |
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| T |
1517783 |
ctaacctcctaaattgcttccaatcatgaaggactgcctttaaatcagccacctttgcagctatgcttcgacaacaattggcatgaacagtggtcacttc |
1517882 |
T |
|
| Q |
223 |
cctaaaatctttactatcttggcaaaatccactaaaatagagggtatccaagaaccttgccttgattcccaaatctcgaaatataccacctttaatgagg |
322 |
Q |
| |
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|||||| |||||||||||||| |||||||||||||||||||| |||||||||||||| | || | |||||||| || || |||||||||| ||||||| |
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|
| T |
1517883 |
cctaaagtctttactatcttgacaaaatccactaaaatagagagtatccaagaacctaacatttagtcccaaatgtccaattataccacctccaatgagg |
1517982 |
T |
|
| Q |
323 |
tcctcaagcacatcttgctccnnnnnnnctgtgaaattatctttcattccataccatgtctcaaacaaagatatggtcttgttgtttgatctcacaaaga |
422 |
Q |
| |
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|| |||||||||||||||| ||||| |||||||||||||||||| |||| | ||||||||||||||||||||||| || || ||| ||||| |
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| T |
1517983 |
tcaagaagcacatcttgctccttttttcctgtggaattatctttcattccattccatatttcaaacaaagatatggtcttgttattcgacctcgcaaagt |
1518082 |
T |
|
| Q |
423 |
aaaatccagtatt |
435 |
Q |
| |
|
||||||||||||| |
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|
| T |
1518083 |
aaaatccagtatt |
1518095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 133; Significance: 6e-69; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 116 - 437
Target Start/End: Original strand, 16643447 - 16643768
Alignment:
| Q |
116 |
ttaacccctaacctcctaaatcttttccaatcacgaagggttttctttaaatcagccaccttggcagtgatgctcctacaacaattggcatggacagtgg |
215 |
Q |
| |
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|||||| |||||||||||||| ||||||||||| | |||| | |||||||||||||||||| |||||||| || | ||||||||||||||| ||||||| |
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| T |
16643447 |
ttaacctctaacctcctaaattttttccaatcatgtagggctgcctttaaatcagccacctttgcagtgatacttcgacaacaattggcatgaacagtgg |
16643546 |
T |
|
| Q |
216 |
ttacagccctaaaatctttactatcttggcaaaatccactaaaatagagggtatccaagaaccttgccttgattcccaaatctcgaaatataccaccttt |
315 |
Q |
| |
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| || ||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| |||||| |||||| | || || ||||||| | | |
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| T |
16643547 |
tcactgccctaaaatctttactatcttgacaaaaaccactaaaatagagagtatccaagaacctaaccttgagtcccaagtgtccaattataccatgtct |
16643646 |
T |
|
| Q |
316 |
aatgaggtcctcaagcacatcttgctccnnnnnnnctgtgaaattatctttcattccataccatgtctcaaacaaagatatggtcttgttgtttgatctc |
415 |
Q |
| |
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||||||||| ||| ||||||||||| ||||| |||| |||||| ||||||||||||| ||||||||||||||||||||||| || || || |
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| T |
16643647 |
aatgaggtcaagaagaacatcttgctctttttttcctgtggaattgtctttctttccataccatgtttcaaacaaagatatggtcttgttattggacctt |
16643746 |
T |
|
| Q |
416 |
acaaagaaaaatccagtattga |
437 |
Q |
| |
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|||||| ||||||| ||||||| |
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|
| T |
16643747 |
acaaagtaaaatccggtattga |
16643768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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