View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1114_high_19 (Length: 485)
Name: NF1114_high_19
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 251 - 402
Target Start/End: Complemental strand, 21546597 - 21546447
Alignment:
| Q |
251 |
tattttataatttctaatgaatatttgacaataaagcattgcaaagcaaacccacctttaatcgctcctaatcagctaccnnnnnnntatctcccattaa |
350 |
Q |
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| T |
21546597 |
tattttataatttctaatgaatatttgacagtaaagcgttgcacatcaaatccacctttaatcgctccta-tcagctgccaaaaaaatatctcccattca |
21546499 |
T |
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| Q |
351 |
tttcccatacattaatttggaagttacacataattttatgtttatggcattc |
402 |
Q |
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| T |
21546498 |
tttcccatacattaatttggaagttacacatgattttatgtttatggcattc |
21546447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 74 - 189
Target Start/End: Original strand, 46424154 - 46424267
Alignment:
| Q |
74 |
tatatttaatgaattcaccgcttcatcttaaaagagcaacaactagggttcataaacaagtaaataataataacacaaagcacgcaagtgttttacggcc |
173 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||| | |||| ||||||||||||||| |||| |||||||||| || || ||| ||||| |
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| T |
46424154 |
tatatttaatgaattcatcgcttcatcttaaaagagcaacaac-atggtttttaaacaagtaaataacaatagcacaaagcacacacatgatttccggcc |
46424252 |
T |
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| Q |
174 |
agtaattgcttttaat |
189 |
Q |
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| T |
46424253 |
agtaatt-cttttaat |
46424267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 74 - 139
Target Start/End: Original strand, 9452967 - 9453031
Alignment:
| Q |
74 |
tatatttaatgaattcaccgcttcatcttaaaagagcaacaactagggttcataaacaagtaaata |
139 |
Q |
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| T |
9452967 |
tatatttaatgaatttaccgcttcatcttaaaagagcaacaa-tagggttcataaacaagtaaata |
9453031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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