View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1114_high_3 (Length: 893)
Name: NF1114_high_3
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 813; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 813; E-Value: 0
Query Start/End: Original strand, 5 - 865
Target Start/End: Original strand, 26456358 - 26457218
Alignment:
| Q |
5 |
tgtcgaagaatattcggaaactaatgactttaatgcattcaaaggttgttttcactttcattctctttatctataatttttcttactttattctttatac |
104 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26456358 |
tgtcgaaaaatattcgggaactaatgactttaatgcattcaaaggttgttttcactttcattctctttatctataatttttcttactttattctttatac |
26456457 |
T |
|
| Q |
105 |
atgtttattgtgatcaatagcaatactttatccccttatcttctcggtaaatattaccgtgagaaaatacattagagtccatgataagtcttaactgtta |
204 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26456458 |
atgtttattgtgatcagtagcaatactttatccccttatcttctcggtaaatattaccgtgagaaaatacattagagtccatgataagtcttaactgtta |
26456557 |
T |
|
| Q |
205 |
gggatgctagaataagtgacaactttagttgttattttatttgcctgtttttagttatttatagggagcaattaaagctgctctggtccagacgcttgtt |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26456558 |
gggatgctagaataagtgacaactttagttgttattttatttgcctgtttttagttatttctagggagcaattaaagctgctctggtccagacgcttgtt |
26456657 |
T |
|
| Q |
305 |
agtgtatcttagagtcatcggaaccgtaaatatgctaaagttgttatttgaaaatactttgaaaaggctgttggaaaaatttattcgctcgtgagtaata |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
26456658 |
agtgtatcttagagtcatcggaaccgtaaatatgctaaagttgttatttgaaaatactttgaaaaggctgttagaaaaatttattcgctcgtgagtaata |
26456757 |
T |
|
| Q |
405 |
ctcttttgttttgaagtacaactcaacattactgtttagtcttgttatgttttatttctctgatattttgttttttgaattgaaggtttatacatgtgtg |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26456758 |
ctcttttgttttgaagtacaactcaacattactgtttagtcttgttatgttttatttctctgatattttgttttttgaattgaaggtttatacatgtgtg |
26456857 |
T |
|
| Q |
505 |
agtgatgctgtcatctccaaattcataccaacttcaaccacaaaattccagctttacaatgaaaatgtaatttcatatgcacaatttgcagcattagcca |
604 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
26456858 |
agtgatgctgtcatctccaaattcataccaacttcaaccacaaaattccaggtttacaatgaaaatgtaatttcatatgcgcaatttgcagaattagcca |
26456957 |
T |
|
| Q |
605 |
ataaactcagcagtttaaaacaacaggtgtgtacatataagcaaatgattgttcacattgatattagactaaagtttctctacatgttttgtcattcttt |
704 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
26456958 |
ataaactcagcagtttaaaacaacaggtgtgtacatataagcaaatgattgttcacattgatattagactaaagtttctctatatgttttgtcattcttt |
26457057 |
T |
|
| Q |
705 |
ctcaaattttgttactgattccaaactatattagtgcgtgcttttgttcaatcatagttgattattaacttgaaatggcactaattttttcttcagcatg |
804 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
26457058 |
ctcaaattttgttactgattccaaactatattagtgtgtgcttttgtccaatcatagttgattattaacttgaaatggcactaattttttcttcagcacg |
26457157 |
T |
|
| Q |
805 |
agctttacgtcacaagttcaaatttcataaagtcaactgttgactctgcacacaagagaat |
865 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26457158 |
agctttacgtcacaagttcaaatttcataaagtcaactgttgactctgcacacaagagaat |
26457218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 250; Significance: 1e-138; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 440 - 861
Target Start/End: Original strand, 29675480 - 29675916
Alignment:
| Q |
440 |
ttagtcttgttatgttttatttctctgatattttgtt----ttttgaattgaaggtttatacatgtgtgagtgatgctgtcatctccaaattcataccaa |
535 |
Q |
| |
|
||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29675480 |
ttagtcttgttatgttttatttctctgatatatttttatttttttgaattgaaggtttatacatgtgtgagtgatgctgtcatctccaaatttataccaa |
29675579 |
T |
|
| Q |
536 |
cttcaaccacaaaattccagctttacaatgaaaatgtaatttcatatgcacaatttgcagcattagccaataaactcagcagtttaaaacaacaggtgtg |
635 |
Q |
| |
|
| ||||| | ||||||||| |||||||||||||||||||||||||||| | ||| |||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29675580 |
cgtcaacaccgaaattccagttttacaatgaaaatgtaatttcatatgcgctattcgcagaattagccaataaactcagcagtttaaaacaacaggtgtg |
29675679 |
T |
|
| Q |
636 |
tacatataagcaaatgattgttcaca-----------ttgatattagactaaagtttctctacatgttttgtcattctttctcaaattttgttactgatt |
724 |
Q |
| |
|
||||||||||||| ||||| |||||| |||| |||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||| |
|
|
| T |
29675680 |
tacatataagcaagtgattcttcacatggatatatagttgaaattagactaaagtttctctacatgttttgtcaccctttctcacattttgtcactgatt |
29675779 |
T |
|
| Q |
725 |
ccaaactatattagtgcgtgcttttgttcaatcatagttgattattaacttgaaatggcactaattttttcttcagcatgagctttacgtcacaagttca |
824 |
Q |
| |
|
|||||||||| ||||||||| |||||| | ||| ||||||||||||||||||||||| | ||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
29675780 |
ccaaactatagtagtgcgtgtttttgtccgatcgtagttgattattaacttgaaatgcctctaatttgttcttcagcacgagctttacgtcacaagttca |
29675879 |
T |
|
| Q |
825 |
aatttcataaagtcaactgttgactctgcacacaaga |
861 |
Q |
| |
|
||||||| ||| || |||||||||||||||| |||| |
|
|
| T |
29675880 |
aatttcacaaaagcagctgttgactctgcacagaaga |
29675916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 5 - 230
Target Start/End: Original strand, 29675240 - 29675464
Alignment:
| Q |
5 |
tgtcgaagaatattcggaaactaatgactttaatgcattcaaaggttgttttcactttcattctctttatctataatttttcttactttattctttatac |
104 |
Q |
| |
|
||||||| ||||||||| ||||||||||| ||||| |||||||||||||||| |||||||| |||||||| || || ||||||||||||||||| || | |
|
|
| T |
29675240 |
tgtcgaaaaatattcgggaactaatgactctaatgaattcaaaggttgtttttactttcatcctctttatgtacaacttttcttactttattctatacat |
29675339 |
T |
|
| Q |
105 |
atgtttattgtgatcaatagcaatactttatccccttatcttctcggtaaatattaccgtgagaaaatacattagagtccatgataagtcttaactgtta |
204 |
Q |
| |
|
|||||||||| ||||| |||||| || ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
29675340 |
gcgtttattgtgttcaatggcaatatttaatcccctaatcttctcggtgaatattaccgtgagaaaatacattagagtccatgataggtctt-actgtta |
29675438 |
T |
|
| Q |
205 |
gggatgctagaataagtgacaacttt |
230 |
Q |
| |
|
|||||||||| |||||||||| |||| |
|
|
| T |
29675439 |
gggatgctagcataagtgacagcttt |
29675464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 5e-37; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 395 - 650
Target Start/End: Complemental strand, 11493758 - 11493504
Alignment:
| Q |
395 |
gtgagtaatactcttttgttttgaagtacaactcaacattactgtttagtcttgttatgttttatttctctgatattttgttttttgaattgaaggttta |
494 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||| | |||| |||| |||||| ||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
11493758 |
gtgagtattactcttttgttttgaagcacaactcgatattagtgttg-gtcttgccatgttttatttctctaatatttttgtttttgaattgaaggttta |
11493660 |
T |
|
| Q |
495 |
tacatgtgtgagtgatgctgtcatctccaaattcataccaacttcaaccacaaaattccagctttacaatgaaaatgtaatttcatatgcacaatttgca |
594 |
Q |
| |
|
||| ||||| |||||||||||||||| | ||||||||||| || ||| ||||||||| | |||||| || |||| ||||||||| | | ||| | | |
|
|
| T |
11493659 |
tacctgtgtatgtgatgctgtcatctcacagttcataccaacatctaccccaaaattccggttttacagggacaatgggatttcatatacgctattcgaa |
11493560 |
T |
|
| Q |
595 |
gcattagccaataaactcagcagtttaaaacaacaggtgtgtacatataagcaaat |
650 |
Q |
| |
|
| ||||||||| | || | | |||||||||||||||||||||| ||||||||| |
|
|
| T |
11493559 |
gaattagccaaaaggcttaacgagttaaaacaacaggtgtgtacatttaagcaaat |
11493504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 11494291 - 11494250
Alignment:
| Q |
15 |
tattcggaaactaatgactttaatgcattcaaaggttgtttt |
56 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
11494291 |
tattcgggaactaatgactctaatgcattcaaaggttgtttt |
11494250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 4e-25; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 367 - 521
Target Start/End: Complemental strand, 21530469 - 21530315
Alignment:
| Q |
367 |
aaaggctgttggaaaaatttattcgctcgtgagtaatactc-ttttgttttgaagtacaactcaacattactgtttagtcttgttatgttttatttctct |
465 |
Q |
| |
|
||||| |||| ||||||||||||| | ||| ||||||||| ||||||||||||||| ||| ||| ||||| ||| | |||||||||||||||||||| |
|
|
| T |
21530469 |
aaaggttgttagaaaaatttattcctttgtgtgtaatactcattttgttttgaagtataacccaatattaccttttgattttgttatgttttatttctct |
21530370 |
T |
|
| Q |
466 |
gatattttgttttttgaattgaaggtttatacatgtgtgagtgatgctgtcatctc |
521 |
Q |
| |
|
||||||| |||||||||||||| |||||||| |||||||| |||| || |||||| |
|
|
| T |
21530369 |
aatatttt-ttttttgaattgaatgtttatacttgtgtgagagatgttgccatctc |
21530315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 378 - 636
Target Start/End: Complemental strand, 21527807 - 21527550
Alignment:
| Q |
378 |
gaaaaatttattcgctcgtgagtaatactc-ttttgttttgaagtacaactcaacattactgtttagtcttgttatgttttatttctctgatattttgtt |
476 |
Q |
| |
|
|||||||| |||| | ||| ||||||||| |||||||||||||| ||| ||| ||||| ||| || |||||||||||||||||||| ||| || || |
|
|
| T |
21527807 |
gaaaaattcattcctttgtgtgtaatactcattttgttttgaagtgcaatccaatattaccttttggttttgttatgttttatttctctaataatt--tt |
21527710 |
T |
|
| Q |
477 |
ttttgaattgaaggtttatacatgtgtgagtgatgctgtcatctccaaattcataccaacttcaaccacaaaattccagctttacaatgaaaatgtaatt |
576 |
Q |
| |
|
|||| ||||| | |||||||||||| ||||||||||| |||||| |||| ||||||| ||| || ||||||| ||| || || |||| ||| | |
|
|
| T |
21527709 |
tttttaattgcaaatttatacatgtgcgagtgatgctgccatctcacaatttctaccaacatcatccccaaaatttcagtatttaaagaaaaagttaagt |
21527610 |
T |
|
| Q |
577 |
tcatatgcacaatttgcagcattagccaataaactcagcagtttaaaacaacaggtgtgt |
636 |
Q |
| |
|
||||||| | ||||| || ||| ||||||||| || | || |||||||||||||||||| |
|
|
| T |
21527609 |
tcatatgagctatttgaagaattggccaataaaatcggaagcttaaaacaacaggtgtgt |
21527550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 490 - 609
Target Start/End: Original strand, 21531452 - 21531571
Alignment:
| Q |
490 |
gtttatacatgtgtgagtgatgctgtcatctccaaattcataccaacttcaaccacaaaattccagctttacaatgaaaatgtaatttcatatgcacaat |
589 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||| |||||||| ||||| | |||||||| | || ||| |||||||||| |||||| | | || |
|
|
| T |
21531452 |
gtttagacatgtgcgagtgatgctgtcatctccaaatttataccaacatcaactataaaattccggtatttcaaggaaaatgtaagttcatacgagctat |
21531551 |
T |
|
| Q |
590 |
ttgcagcattagccaataaa |
609 |
Q |
| |
|
||| || ||||||||||||| |
|
|
| T |
21531552 |
ttgaagaattagccaataaa |
21531571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 399 - 636
Target Start/End: Complemental strand, 21525434 - 21525201
Alignment:
| Q |
399 |
gtaatactc-ttttgttttgaagtacaactcaacattactgtttagtcttgttatgttttatttctctgatattttgttttttgaattgaaggtttatac |
497 |
Q |
| |
|
||||||||| |||||||||||||| |||| ||| |||||| || || |||||||||||||||| ||| ||| ||| ||||| |||||||||||||||| |
|
|
| T |
21525434 |
gtaatactcgttttgttttgaagtgcaacccaatattact--ttggttttgttatgttttatttttcttataattttttttt--aattgaaggtttatac |
21525339 |
T |
|
| Q |
498 |
atgtgtgagtgatgctgtcatctccaaattcataccaacttcaaccacaaaattccagctttacaatgaaaatgtaatttcatatgcacaatttgcagca |
597 |
Q |
| |
|
||||| ||||| ||||| |||||| |||| || |||| ||| || ||||||||| | || || | ||||||||||||||| | | ||| | | | |
|
|
| T |
21525338 |
atgtgcgagtg-tgctgccatctcacaatttctatcaacatcacccccaaaattccggtatttaaagggaaatgtaatttcatacgagctattcgaggaa |
21525240 |
T |
|
| Q |
598 |
ttagccaataaactcagcagtttaaaacaacaggtgtgt |
636 |
Q |
| |
|
|| ||||||||| |||| || ||||||||||| |||||| |
|
|
| T |
21525239 |
ttggccaataaaatcagaagcttaaaacaacatgtgtgt |
21525201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 367 - 521
Target Start/End: Complemental strand, 21531935 - 21531780
Alignment:
| Q |
367 |
aaaggctgttggaaaaatttattcgctcgtgagtaatactc-ttttgttttgaagtacaactcaacattactgtttagtcttgttatgttttatttctct |
465 |
Q |
| |
|
||||| || ||||||||||||||| | ||| ||||||||| ||||||||||||| ||| ||| ||||| ||| | ||||||| |||||||||||| |
|
|
| T |
21531935 |
aaaggttgctggaaaaatttattcctttgtgtgtaatactcattttgttttgaagagtaacccaatattaccttttgattttgttatattttatttctct |
21531836 |
T |
|
| Q |
466 |
gatattttgttttttgaattgaaggtttatacatgtgtgagtgatgctgtcatctc |
521 |
Q |
| |
|
|||| | |||||| ||||||| |||||||| |||||||| ||||||| |||||| |
|
|
| T |
21531835 |
aatatatattttttttaattgaatgtttatacttgtgtgagagatgctgccatctc |
21531780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 449 - 609
Target Start/End: Original strand, 21527299 - 21527456
Alignment:
| Q |
449 |
ttatgttttatttctctgatattttgttttttgaattgaaggtttatacatgtgtgagtgatgctgtcatctccaaattcataccaacttcaaccacaaa |
548 |
Q |
| |
|
||||||||| |||||| ||||| || ||||| | |||||||||| ||||||| ||||||| ||| |||||| |||| |||||||| |||||| |||| |
|
|
| T |
21527299 |
ttatgttttctttctcggatatgtttttttt---aatgaaggtttagacatgtgcgagtgatactgccatctcacaatttataccaacatcaaccccaaa |
21527395 |
T |
|
| Q |
549 |
attccagctttacaatgaaaatgtaatttcatatgcacaatttgcagcattagccaataaa |
609 |
Q |
| |
|
||| | |||||| |||||||||| |||||||| | ||| | || ||||||||||||| |
|
|
| T |
21527396 |
attttggtattacaaggaaaatgtaagttcatatgagctattcgaagaattagccaataaa |
21527456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University