View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1114_high_4 (Length: 770)
Name: NF1114_high_4
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 647; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 647; E-Value: 0
Query Start/End: Original strand, 1 - 679
Target Start/End: Complemental strand, 14225440 - 14224762
Alignment:
| Q |
1 |
gcttggaccatctttactctcccatccttcaccatttcctgaaccatctttgttatcccatccttcaactttgcctggaatgtcgtttttatcctatcct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
14225440 |
gcttggaccatctttactctcccatccttcaccatttcctgaaccatctttgttatcccatccttcaactttgcatggaatgtcgtttttatcctatcct |
14225341 |
T |
|
| Q |
101 |
tcatcttttctatctcatcgttcaccttttccatctcgatgtacaccttgttctcgttgcgctgaacaatcctatgaaaaatcctatcttcaagttcttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
14225340 |
tcatcttttctatctcatcgttcaccttttccatctcgatgtacaccttgttctcgttgcgctgaacaatcctatgaaaaatcctatcttcaagtccttg |
14225241 |
T |
|
| Q |
201 |
catccagcttggagcttgaccagacaaccctgcatcctgagcttcaccctcttgcattggccaattttcagaaacttcagcttgaacacgaaaacctatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14225240 |
catccagcttggagcttgaccagacaaccctgcatcctgagcttcaccctcttgcattggccaattttcagaaacttcagcttgaacacgaaaacctatg |
14225141 |
T |
|
| Q |
301 |
tatttacaggggagttcaaaagatgcagccaccttctctagtgctaaacatctaatatttcccagattgtggctacaacaagtagggcacctgttatgta |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14225140 |
tatttacaggggagttcaaaagatgcagccaccttctctagtgctatacatctaatatttcccagattgtggctacaacaagtagggcacctgttatgta |
14225041 |
T |
|
| Q |
401 |
ctttaggtttgcaacctgaacatatagtgtgaccatttgaacactgcaatgacaacaaaggtaaagaagttaactaaatttccaaataaagtttcttcta |
500 |
Q |
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| T |
14225040 |
ctttaggtttgcaacctgaacatatagtgtgacaatttgaacactgcaatgacagcaaaggtaaagaagttaactaaatttccaaataaagtttcttcta |
14224941 |
T |
|
| Q |
501 |
tttttagaggatattcaagttgaatcaaaaggaaatcaccaatattctcatcctagataagctagggaagacatgtgatactaaataaggaatgatgaaa |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
14224940 |
tttttagaggatattcaagttgaatcaaaaggaaatcaccaatattctcatcctagataagctaggcaagacatgggatactaaataaggaatgatgaaa |
14224841 |
T |
|
| Q |
601 |
ttaaaatcgtgataccaagggtttgtttactttttaatttcagttgtcgctttttaaaatgtatagtgaacaactgtgt |
679 |
Q |
| |
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| T |
14224840 |
ttaaaatcgtgataccaagggtttgtttactttttaatttcagctgtcgctttttaaaatgtatagtgaacaactgtgt |
14224762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 302 - 550
Target Start/End: Complemental strand, 14232349 - 14232103
Alignment:
| Q |
302 |
atttacaggggagttcaaaagatgcagccaccttctctagtgctaaacatctaatatttcccagattgtggctacaacaagtagggcacctgttatgtac |
401 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||| | || || |||||||||||||| ||||||||| |
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| T |
14232349 |
atttacaggggagtgcaaaagatgcagccaccttctccagtgctagacatctaatatttcccagctcatgcct---acaagtagggcaccggttatgtac |
14232253 |
T |
|
| Q |
402 |
tttaggtttgcaacctgaacatatagtgtgaccatttgaacactgcaatgacaacaaaggtaaagaagttaactaaa-tttccaaataaagtttcttcta |
500 |
Q |
| |
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| ||||||||||| |||| ||||||||||||||||| |||||||||||| |||| ||||||||||||||||||| |||||||||||| | |||| || |
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| T |
14232252 |
tctaggtttgcaatctgagcatatagtgtgaccattcgaacactgcaatagcaacgtcggtaaagaagttaactaaattttccaaataaattctctttta |
14232153 |
T |
|
| Q |
501 |
tttttagaggatattcaagttgaatcaaaaggaaatcaccaatattctca |
550 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| ||||||||| |
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|
| T |
14232152 |
tttttagaggatattcaatttgaatcaaaaggaaatcaccgatattctca |
14232103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 378 - 449
Target Start/End: Original strand, 5037683 - 5037754
Alignment:
| Q |
378 |
acaagtagggcacctgttatgtactttaggtttgcaacctgaacatatagtgtgaccatttgaacactgcaa |
449 |
Q |
| |
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|||||||||||||| || ||| ||| | ||||||||||| || |||| ||||||||||||||| |||||||| |
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| T |
5037683 |
acaagtagggcaccggtcatggactcttggtttgcaaccagagcatagagtgtgaccatttgagcactgcaa |
5037754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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