View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1114_high_40 (Length: 385)
Name: NF1114_high_40
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_high_40 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 10 - 328
Target Start/End: Original strand, 47916565 - 47916893
Alignment:
| Q |
10 |
agatgaatgatgataaaaagattaccaatgtcaacaagccaatatggttcgtaaaaaccaaatccagttaaaaagtttcctggtgccttgtttccaaatg |
109 |
Q |
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| T |
47916565 |
agatgaatgatgataaaaagattaccaatgtcaacaagccaatatggttcgtaaaaaccaaatccagttaaaaagtttcctggtgccttgtttccaaatg |
47916664 |
T |
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| Q |
110 |
ctgcatagcctaaaagaccacataatgcataaaagaatgtggtgattataattccaaccaaacttgatttcttcataacttgattttctggcgggcttga |
209 |
Q |
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| T |
47916665 |
ctgcatagcctaaaagaccacataatgcataaaagaatgtggtgattataattccaaccaaacttgatttcttcataacttgattttctggcgggcttga |
47916764 |
T |
|
| Q |
210 |
ttttaatgtgtcctgtataaaa----------nnnnnnnnnnnntgaaatcagattacttgcctgattcagggaatttttaaaaatggggtcttaaatta |
299 |
Q |
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| T |
47916765 |
ttttaatgtgtcctgtataaaaaatataaaataaaaaaatatattgaaatcagattacttgcctgatgcagggaatttttaaaaatggggtcttaaatta |
47916864 |
T |
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| Q |
300 |
acagcccaaggaagtttaaatgaccagaa |
328 |
Q |
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| T |
47916865 |
acaatccaaggaagtttaaatgagcagaa |
47916893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 25 - 229
Target Start/End: Original strand, 47901884 - 47902088
Alignment:
| Q |
25 |
aaaagattaccaatgtcaacaagccaatatggttcgtaaaaaccaaatccagttaaaaagtttcctggtgccttgtttccaaatgctgcatagcctaaaa |
124 |
Q |
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| T |
47901884 |
aaaagattaccaatatcaacaagccagaatggttcataaaaaccaaatccagttaaaaagtttcctggtgctttgtttccaaatgctgcatatcctacaa |
47901983 |
T |
|
| Q |
125 |
gaccacataatgcataaaagaatgtggtgattataattccaaccaaacttgatttcttcataacttgattttctggcgggcttgattttaatgtgtcctg |
224 |
Q |
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| T |
47901984 |
gaccacataatgcataaaagaatgtggtgattgtaattccagtcaaatttgatttcttcatgacttgattttccggtgggcttgattttaatgtatcctg |
47902083 |
T |
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| Q |
225 |
tataa |
229 |
Q |
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||||| |
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| T |
47902084 |
tataa |
47902088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 10 - 225
Target Start/End: Original strand, 47922991 - 47923206
Alignment:
| Q |
10 |
agatgaatgatgataaaaagattaccaatgtcaacaagccaatatggttcgtaaaaaccaaatccagttaaaaagtttcctggtgccttgtttccaaatg |
109 |
Q |
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|||||||| ||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||| || || | |
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| T |
47922991 |
agatgaataatgatgaaaagattaccaatatcaacaagccaatatggttcataaaaaccaaatccagttaagaagtttcccggtgccttgttcccgaagg |
47923090 |
T |
|
| Q |
110 |
ctgcatagcctaaaagaccacataatgcataaaagaatgtggtgattataattccaaccaaacttgatttcttcataacttgattttctggcgggcttga |
209 |
Q |
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|| |||||||||||||||||||||||| |||||||| |||| | ||| | ||||||| | | |||||||||||| |||||||||||||| || || || |
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| T |
47923091 |
ctccatagcctaaaagaccacataatgaataaaagattgtgcttattgtgattccaataagagatgatttcttcatgacttgattttctggtggactaga |
47923190 |
T |
|
| Q |
210 |
ttttaatgtgtcctgt |
225 |
Q |
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||||||||| |||||| |
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| T |
47923191 |
ttttaatgtatcctgt |
47923206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 10 - 225
Target Start/End: Original strand, 47908120 - 47908335
Alignment:
| Q |
10 |
agatgaatgatgataaaaagattaccaatgtcaacaagccaatatggttcgtaaaaaccaaatccagttaaaaagtttcctggtgccttgtttccaaatg |
109 |
Q |
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|||||||| ||||| |||||||||||||| ||||| ||||| ||||||| |||||||||||||| ||||| |||||||||||||||||||| ||||||| |
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| T |
47908120 |
agatgaataatgatgaaaagattaccaatatcaacgagccagaatggttcataaaaaccaaatccggttaagaagtttcctggtgccttgttcccaaatg |
47908219 |
T |
|
| Q |
110 |
ctgcatagcctaaaagaccacataatgcataaaagaatgtggtgattataattccaaccaaacttgatttcttcataacttgattttctggcgggcttga |
209 |
Q |
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|| |||| |||| ||||||||||||||||||||||||||||||||||| || ||| || |||||| ||||| |||| ||||||||| |||||||| |
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| T |
47908220 |
cttcataacctagaagaccacataatgcataaaagaatgtggtgattaatatcccagtgaaggctgattttttcatgactttattttctggtgggcttga |
47908319 |
T |
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| Q |
210 |
ttttaatgtgtcctgt |
225 |
Q |
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||||| |||||||||| |
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| T |
47908320 |
ttttattgtgtcctgt |
47908335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 324 - 381
Target Start/End: Complemental strand, 33025980 - 33025923
Alignment:
| Q |
324 |
cagaacctaacgaattgaatgacttgcacaggcatcgaagttgaatgaggagttttac |
381 |
Q |
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| T |
33025980 |
cagaaactaacgaattgaatgacttgcataggcatcgaagttgaatgaggagttttac |
33025923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 324 - 381
Target Start/End: Complemental strand, 33019582 - 33019525
Alignment:
| Q |
324 |
cagaacctaacgaattgaatgacttgcacaggcatcgaagttgaatgaggagttttac |
381 |
Q |
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||||| |||| ||||||| ||||||||| ||||||||||||||||| |||| |||||| |
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| T |
33019582 |
cagaaactaatgaattgactgacttgcagaggcatcgaagttgaataaggatttttac |
33019525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 331 - 381
Target Start/End: Complemental strand, 33037469 - 33037419
Alignment:
| Q |
331 |
taacgaattgaatgacttgcacaggcatcgaagttgaatgaggagttttac |
381 |
Q |
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||||||||||| ||||| || || |||||||||||||||||||||||||| |
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| T |
33037469 |
taacgaattgatagacttacagagacatcgaagttgaatgaggagttttac |
33037419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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