View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1114_high_46 (Length: 378)

Name: NF1114_high_46
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1114_high_46
NF1114_high_46
[»] chr2 (4 HSPs)
chr2 (1-271)||(27333477-27333748)
chr2 (33-221)||(18206099-18206288)
chr2 (31-85)||(31118503-31118557)
chr2 (151-256)||(31118632-31118740)
[»] chr7 (3 HSPs)
chr7 (4-131)||(12625886-12626013)
chr7 (62-144)||(21064014-21064096)
chr7 (5-74)||(38456066-38456135)
[»] chr3 (1 HSPs)
chr3 (42-249)||(19196251-19196459)
[»] chr1 (6 HSPs)
chr1 (1-94)||(43784370-43784463)
chr1 (136-248)||(28540462-28540577)
chr1 (136-253)||(33298303-33298422)
chr1 (133-253)||(48997487-48997610)
chr1 (4-185)||(50908128-50908318)
chr1 (1-74)||(44489066-44489139)
[»] chr6 (2 HSPs)
chr6 (40-134)||(19223198-19223292)
chr6 (4-85)||(6287286-6287367)
[»] scaffold0408 (1 HSPs)
scaffold0408 (4-85)||(5911-5992)
[»] chr8 (3 HSPs)
chr8 (4-85)||(14095569-14095650)
chr8 (136-253)||(10529736-10529856)
chr8 (126-185)||(37229411-37229470)
[»] chr4 (4 HSPs)
chr4 (97-253)||(39463839-39463998)
chr4 (136-249)||(849741-849857)
chr4 (4-85)||(42562161-42562242)
chr4 (198-253)||(38650317-38650371)
[»] chr5 (2 HSPs)
chr5 (4-185)||(2741451-2741635)
chr5 (136-253)||(13272531-13272651)
[»] scaffold1212 (1 HSPs)
scaffold1212 (133-185)||(892-944)


Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 27333748 - 27333477
Alignment:
Q  1 ggttgctcctgctcaatatcaggctgatattgatgatcttcatactgatgttgttgatccacatcaaaatgatattgttgaggctcctcataataagtct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  27333748 ggttgctcctgctcaatatcaggctgatattgatgatcttcatactaatgttgttgatccacgtcaaaatgatattgttgaggctcctcataataagtct 27333649  T
Q  101 gattctgcgcctggtgctactcctcataatgttgttgatattgtgtcggatccaccgtgtgggatggacccatctgtgacgttgagg-cccagcagcgtc 199  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  27333648 gattctgcgcctggtgctactcctcataatgttgctgatattgtgtcgggtccaccgtgtgggatggacccatctgtgacgttgaggccccagcagcgtc 27333549  T
Q  200 aaccctagcaagtctcttgccctcctctccctcgactagccaaaggagggcgtagtgtatccctttccctct 271  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  27333548 aaccctagcaagtctcgtgccctcctctccctcgactagccaaaggatggcgtagtgtatccctttccctct 27333477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 33 - 221
Target Start/End: Original strand, 18206099 - 18206288
Alignment:
Q  33 atgatcttcatactgatgttgttgatccacatcaaaatgatattgttgaggctcctcataataagtctgattctgcgcctggtgctactcctcataatgt 132  Q
    |||||| ||||||| ||| || |||| | ||||||||||||| ||||||||||||| |||||||| |||||| |||||||| || ||||||| ||||||     
T  18206099 atgatcctcatactaatgctgctgatacgcatcaaaatgatactgttgaggctccttataataaggctgattttgcgcctgctgatactcctgataatgc 18206198  T
Q  133 tgttgatattgtgtcggatccaccgtgtgggatggacccatctgtgacgttgagg-cccagcagcgtcaaccctagcaagtctcttgccc 221  Q
    || ||||| ||||||||||||||||| |||||| ||||| ||||||| | | ||| ||| ||| | ||||||||| |||||||| |||||    
T  18206199 tgctgataatgtgtcggatccaccgtatgggatcgacccgtctgtgatgataaggcccccgcaacatcaaccctaccaagtctcgtgccc 18206288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 85
Target Start/End: Original strand, 31118503 - 31118557
Alignment:
Q  31 tgatgatcttcatactgatgttgttgatccacatcaaaatgatattgttgaggct 85  Q
    |||||||| ||||||||||| || ||||  |||||||||||||| ||||||||||    
T  31118503 tgatgatcctcatactgatgctgctgatagacatcaaaatgataatgttgaggct 31118557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 256
Target Start/End: Original strand, 31118632 - 31118740
Alignment:
Q  151 tccaccgtgtgggatggacccatctgtgacgttgaggc-ccagcagcgtcaaccctagcaagtctcttgccctc--ctctccctcgactagccaaaggag 247  Q
    |||||| | |||||||||||| ||||||| |||||  | || ||| | ||||| |||| ||||||| ||||| |  |||||||||||| ||||| |||||    
T  31118632 tccaccatctgggatggacccttctgtgatgttgaccctcctgcaacatcaactctagaaagtctcgtgcccccacctctccctcgaccagccataggag 31118731  T
Q  248 ggcgtagtg 256  Q
    |||||||||    
T  31118732 ggcgtagtg 31118740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 5e-35; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 4 - 131
Target Start/End: Complemental strand, 12626013 - 12625886
Alignment:
Q  4 tgctcctgctcaatatcaggctgatattgatgatcttcatactgatgttgttgatccacatcaaaatgatattgttgaggctcctcataataagtctgat 103  Q
    ||||| ||||||||||||| ||||||||||||||| |||||||||||||| |||| | ||||||||||||| || ||| ||||||||||||||| |||||    
T  12626013 tgctcttgctcaatatcagactgatattgatgatcctcatactgatgttgctgatacgcatcaaaatgatactggtgaagctcctcataataagcctgat 12625914  T
Q  104 tctgcgcctggtgctactcctcataatg 131  Q
    | |||||||| || ||||||||||||||    
T  12625913 tttgcgcctgctgatactcctcataatg 12625886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 62 - 144
Target Start/End: Original strand, 21064014 - 21064096
Alignment:
Q  62 catcaaaatgatattgttgaggctcctcataataagtctgattctgcgcctggtgctactcctcataatgttgttgatattgt 144  Q
    ||||||||||||||||||||||||||||||||||||  ||||||| |||||| || ||||||| |||||||||||||||||||    
T  21064014 catcaaaatgatattgttgaggctcctcataataaggttgattctacgcctgctgatactcctgataatgttgttgatattgt 21064096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 38456135 - 38456066
Alignment:
Q  5 gctcctgctcaatatcaggctgatattgatgatcttcatactgatgttgttgatccacatcaaaatgata 74  Q
    |||||||||||||||||||||| |  |||||||| |||||| ||||||| |||| | ||||||| |||||    
T  38456135 gctcctgctcaatatcaggctgcttatgatgatcctcataccgatgttgctgatacgcatcaaactgata 38456066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 42 - 249
Target Start/End: Complemental strand, 19196459 - 19196251
Alignment:
Q  42 atactgatgttgttgatccacatcaaaatgatattgttgaggctcctcataataagtctgattctgcgcctggtgctactcctcataatgttgttgatat 141  Q
    |||||||||||| ||||   ||| ||||||||||||||||||||  |||||||||| |||||| || ||||| || ||||| |||||| ||||||||||     
T  19196459 atactgatgttgctgatatgcattaaaatgatattgttgaggcttttcataataagcctgattttgtgcctgctgatactcttcataacgttgttgatac 19196360  T
Q  142 tgtgtcggatccaccgtgtgggatggacccatctgtgacgttgagg-cccagcagcgtcaaccctagcaagtctcttgccctcctctccctcgactagcc 240  Q
    || ||| | | || | | |||||| ||||||||||||| | ||||| ||| ||| | | ||| ||| |||||||| ||||| | ||||||||||| | ||    
T  19196359 tgcgtcaggtgcaacatctgggatcgacccatctgtgatgatgaggcccccgcaacattaacactaccaagtctcgtgcccccatctccctcgaccatcc 19196260  T
Q  241 aaaggaggg 249  Q
    |||||||||    
T  19196259 aaaggaggg 19196251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 43784370 - 43784463
Alignment:
Q  1 ggttgctcctgctcaatatcaggctgatattgatgatcttcatactgatgttgttgatccacatcaaaatgatattgttgaggctcctcataat 94  Q
    ||||||| |||||||||||||||||| |  |||||||  ||||||||||||||||||| ||||| ||||||||| ||||||| |||||||||||    
T  43784370 ggttgcttctgctcaatatcaggctgctcctgatgattctcatactgatgttgttgatacacattaaaatgatactgttgagactcctcataat 43784463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 136 - 248
Target Start/End: Original strand, 28540462 - 28540577
Alignment:
Q  136 tgatattgtgtcggatccaccgtgtgggatggacccatctgtgacgttgaggccc-agcagcgtcaaccctagcaagtctcttgc--cctcctctccctc 232  Q
    |||||||||||||| | |||||| |||||||||||| |||||||| ||||  |||  ||||| ||||| |||||||||||| |||  || ||||||||||    
T  28540462 tgatattgtgtcgggttcaccgtttgggatggacccgtctgtgacattgacccccgtgcagcatcaactctagcaagtctcgtgcctccacctctccctc 28540561  T
Q  233 gactagccaaaggagg 248  Q
    ||| ||| ||||||||    
T  28540562 gaccagctaaaggagg 28540577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 136 - 253
Target Start/End: Original strand, 33298303 - 33298422
Alignment:
Q  136 tgatattgtgtcggatccaccgtgtgggatggacccatctgtgacgttgaggcccagcagcgtcaaccctagcaagtctc--ttgccctcctctccctcg 233  Q
    |||| ||||||||| | |||||| |||||||||||| ||| |||| ||||  ||| ||||| ||||| ||||||||||||  |  ||| |||||||||||    
T  33298303 tgatgttgtgtcgggttcaccgtctgggatggacccgtctttgaccttgaccccctgcagcatcaactctagcaagtctcgttcccccacctctccctcg 33298402  T
Q  234 actagccaaaggagggcgta 253  Q
    || | ||| |||||||||||    
T  33298403 accaaccataggagggcgta 33298422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 133 - 253
Target Start/End: Complemental strand, 48997610 - 48997487
Alignment:
Q  133 tgttgatattgtgtcggatccaccgtgtgggatggacccatctgtgacgttga-ggcccagcagcgtcaaccctagcaagtctc--ttgccctcctctcc 229  Q
    |||||||| |||||||| | |||||| |||||||||||| |||||||||||||   ||| ||||| ||||| ||||||||||||  |  ||| |||||||    
T  48997610 tgttgatactgtgtcgggttcaccgtctgggatggacccgtctgtgacgttgacccccctgcagcatcaactctagcaagtctcgttcccccacctctcc 48997511  T
Q  230 ctcgactagccaaaggagggcgta 253  Q
    |||||| | ||| | |||||||||    
T  48997510 ctcgaccaaccatatgagggcgta 48997487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 185
Target Start/End: Complemental strand, 50908318 - 50908128
Alignment:
Q  4 tgctcctgctcaatatcaggctgatattgatgatcttcatactgatgttgttgatccacatcaaaatgata------ttgttgaggctcct---cataat 94  Q
    ||||||||||||||| ||||||| |  |||||||| ||||||||||| || |||| | ||||||| |||||        ||||||||||||    || ||    
T  50908318 tgctcctgctcaataccaggctgctcatgatgatcctcatactgatgctgctgatacgcatcaaattgatacaactgaggttgaggctcctgaaaatgat 50908219  T
Q  95 aagtctgattctgcgcctggtgctactcctcataatgttgttgatattgtgtcggatccaccgtgtgggatggacccatctgtgacgttga 185  Q
    | | ||||| ||||||||| |  ||| | | |||||  || ||||| |||||||||| |||||| |||||||||||| |||||||||||||    
T  50908218 aggcctgatcctgcgcctgctcatacacttgataatcctgctgatactgtgtcggattcaccgtctgggatggacccgtctgtgacgttga 50908128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 44489139 - 44489066
Alignment:
Q  1 ggttgctcctgctcaatatcaggctgatattgatgatcttcatactgatgttgttgatccacatcaaaatgata 74  Q
    ||||||||||| |||||| ||||||  |  |||||||||||||||||||| || |||| | ||||||| |||||    
T  44489139 ggttgctcctggtcaataccaggctactcatgatgatcttcatactgatgctgctgatacgcatcaaactgata 44489066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 40 - 134
Target Start/End: Complemental strand, 19223292 - 19223198
Alignment:
Q  40 tcatactgatgttgttgatccacatcaaaatgatattgttgaggctcctcataataagtctgattctgcgcctggtgctactcctcataatgttg 134  Q
    ||||||||||| || |||| | |||||||||||||||||||||||||||||||||||| |||||| || ||||| |  ||||| | |||||||||    
T  19223292 tcatactgatgctgctgatacgcatcaaaatgatattgttgaggctcctcataataaggctgattatgtgcctgttaatactcttgataatgttg 19223198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 6287286 - 6287367
Alignment:
Q  4 tgctcctgctcaatatcaggctgatattgatgatcttcatactgatgttgttgatccacatcaaaatgatattgttgaggct 85  Q
    ||||||||||||||| ||||||| |  |||||||| |||| ||||||||| |||| | ||||||| ||||| || |||||||    
T  6287286 tgctcctgctcaataccaggctgctcatgatgatcctcattctgatgttgctgatacgcatcaaactgatactggtgaggct 6287367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 5992 - 5911
Alignment:
Q  4 tgctcctgctcaatatcaggctgatattgatgatcttcatactgatgttgttgatccacatcaaaatgatattgttgaggct 85  Q
    ||||||||||||||| ||||||| |  |||||||| ||||||||||||||||||| | ||||||| ||||| || |||||||    
T  5992 tgctcctgctcaataccaggctgctcatgatgatcctcatactgatgttgttgatacgcatcaaactgatactggtgaggct 5911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 14095650 - 14095569
Alignment:
Q  4 tgctcctgctcaatatcaggctgatattgatgatcttcatactgatgttgttgatccacatcaaaatgatattgttgaggct 85  Q
    ||||||||||||||| ||||||| |  |||||||| ||||||||||||||||||| | ||||||| ||||| || |||||||    
T  14095650 tgctcctgctcaataccaggctgctcatgatgatcctcatactgatgttgttgatacgcatcaaactgatactggtgaggct 14095569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 253
Target Start/End: Complemental strand, 10529856 - 10529736
Alignment:
Q  136 tgatattgtgtcggatccaccgtgtgggatggacccatctgtgacgttga-ggcccagcagcgtcaaccctagcaagtctc--ttgccctcctctccctc 232  Q
    ||||| |||||||| | |||||| |||||||||||| ||||||||||| |   ||| ||||| ||||| ||||||||||||  |  ||| ||||||||||    
T  10529856 tgatactgtgtcgggtgcaccgtctgggatggacccgtctgtgacgttaacccccctgcagcatcaactctagcaagtctcgttcccccacctctccctc 10529757  T
Q  233 gactagccaaaggagggcgta 253  Q
    ||| | ||| |||||||||||    
T  10529756 gaccaaccataggagggcgta 10529736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 185
Target Start/End: Original strand, 37229411 - 37229470
Alignment:
Q  126 ataatgttgttgatattgtgtcggatccaccgtgtgggatggacccatctgtgacgttga 185  Q
    ||||| |||||| ||||||||||  | |||||| |||||||||||| |||||||||||||    
T  37229411 ataatcttgttggtattgtgtcgagttcaccgtctgggatggacccgtctgtgacgttga 37229470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 97 - 253
Target Start/End: Complemental strand, 39463998 - 39463839
Alignment:
Q  97 gtctgattctgcgcctggtgctactcctcataatgttgttgatattgtgtcggatccaccgtgtgggatggacccatctgtgacgttga-ggcccagcag 195  Q
    ||||||| ||||||||| |  ||| ||| |||||  || ||||| |||||||| | ||| |  |||||||||||| |||||||||||||   ||| ||||    
T  39463998 gtctgatcctgcgcctgctcatacacctgataatcctgctgatactgtgtcgggttcactgcctgggatggacccgtctgtgacgttgacccccctgcag 39463899  T
Q  196 cgtcaaccctagcaagtctcttgc--cctcctctccctcgactagccaaaggagggcgta 253  Q
    | ||||| |||||||||||| | |  || ||||||||||||| ||||| |||||||||||    
T  39463898 catcaactctagcaagtctcgttcctccacctctccctcgaccagccataggagggcgta 39463839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 249
Target Start/End: Original strand, 849741 - 849857
Alignment:
Q  136 tgatattgtgtcggatccaccgtgtgggatggacccatctgtgacgttga-ggcccagcagcgtcaaccctagcaagtctc--ttgccctcctctccctc 232  Q
    |||||||||||||| | |||||| |||||||||||| |||| ||||||||   ||| ||||| ||||| ||||||||||||  |  ||| ||||||||||    
T  849741 tgatattgtgtcgggttcaccgtctgggatggacccgtctgcgacgttgacccccctgcagcatcaactctagcaagtctcgttcccccacctctccctc 849840  T
Q  233 gactagccaaaggaggg 249  Q
    |||  |||| |||||||    
T  849841 gaccggccataggaggg 849857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 42562161 - 42562242
Alignment:
Q  4 tgctcctgctcaatatcaggctgatattgatgatcttcatactgatgttgttgatccacatcaaaatgatattgttgaggct 85  Q
    |||||||||||||||  |||||  |  |||||||| |||||||||||||| |||| | ||||||| |||||||| |||||||    
T  42562161 tgctcctgctcaatactaggctactcatgatgatcctcatactgatgttgctgatacgcatcaaactgatattggtgaggct 42562242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 198 - 253
Target Start/End: Complemental strand, 38650371 - 38650317
Alignment:
Q  198 tcaaccctagcaagtctcttgccctcctctccctcgactagccaaaggagggcgta 253  Q
    |||||||||  ||||||| ||||| ||||||||||||| |||||||||||||||||    
T  38650371 tcaaccctactaagtctcgtgccc-cctctccctcgaccagccaaaggagggcgta 38650317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 185
Target Start/End: Complemental strand, 2741635 - 2741451
Alignment:
Q  4 tgctcctgctcaatatcaggctgatattgatgatcttcatactgatgttgttgatccacatcaaaatgatattgttgaggctcctcataataa---gtct 100  Q
    ||||||||||||||| || |||| |  |||||||| ||||| ||||| |  |||| ||||||||| |||||    |||||||||| | ||| |   |  |    
T  2741635 tgctcctgctcaataccatgctgctcatgatgatcctcatattgatgctactgatacacatcaaattgatacgactgaggctcctgaaaatgataggctt 2741536  T
Q  101 gattctgcgcctggtgctactcctcataatgttgttgatattgtgtcggatccaccgtgtgggatggacccatctgtgacgttga 185  Q
    ||| ||||||||| |  ||| ||| |||||  || ||||| |||||||| | |||||| |||||||||||| |||||||||||||    
T  2741535 gatcctgcgcctgctcatacacctgataatcctgctgatactgtgtcgggttcaccgtctgggatggacccgtctgtgacgttga 2741451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 253
Target Start/End: Complemental strand, 13272651 - 13272531
Alignment:
Q  136 tgatattgtgtcggatccaccgtgtgggatggacccatctgtgacgttga-ggcccagcagcgtcaaccctagcaagtctc--ttgccctcctctccctc 232  Q
    ||||| ||| |||| | |||||| ||||||||| || |||||||||||||   ||| ||||| ||||| ||||||||||||  |  ||| ||||||||||    
T  13272651 tgatactgtttcgggttcaccgtctgggatggagccgtctgtgacgttgacccccctgcagcatcaactctagcaagtctcgttcccccacctctccctc 13272552  T
Q  233 gactagccaaaggagggcgta 253  Q
    ||| | ||| |||||||||||    
T  13272551 gaccaaccataggagggcgta 13272531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1212 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1212
Description:

Target: scaffold1212; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 892 - 944
Alignment:
Q  133 tgttgatattgtgtcggatccaccgtgtgggatggacccatctgtgacgttga 185  Q
    ||||||||||||||||| | || ||| |||||||||||| ||||||| |||||    
T  892 tgttgatattgtgtcgggttcagcgtctgggatggacccgtctgtgatgttga 944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University