View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1114_high_48 (Length: 377)

Name: NF1114_high_48
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1114_high_48
NF1114_high_48
[»] chr8 (10 HSPs)
chr8 (30-340)||(2982255-2982573)
chr8 (30-158)||(2709263-2709388)
chr8 (36-158)||(9849080-9849199)
chr8 (36-161)||(3004351-3004473)
chr8 (191-328)||(2709076-2709221)
chr8 (188-235)||(2707923-2707970)
chr8 (279-329)||(2991581-2991631)
chr8 (279-311)||(2707839-2707871)
chr8 (36-75)||(2991339-2991378)
chr8 (188-236)||(9848999-9849047)
[»] chr6 (3 HSPs)
chr6 (36-162)||(18357748-18357871)
chr6 (264-314)||(18357981-18358031)
chr6 (191-233)||(18357900-18357942)
[»] chr1 (2 HSPs)
chr1 (30-162)||(10753648-10753777)
chr1 (281-328)||(10753471-10753518)


Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 30 - 340
Target Start/End: Original strand, 2982255 - 2982573
Alignment:
Q  30 aaaagccccaaaggattggtttaaaaatcttacttctcttgagaatcttgaattttactttctttcaagtcgaaagtttcaagtaattgaaatgtggtgg 129  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  2982255 aaaagccccaaaggattggtttaaaaatcttatttctcttgagaatcttgaattttactttctttcaagtcaaaaatttcaagtaattgaaatgtggtgg 2982354  T
Q  130 tttaaagatgacctcaactgtcttccttccctcnnnnnnntcacnnnnnnncattgtaacctaaatgcattgccatattggatatgcaacatctcatcac 229  Q
    |||||||||||||||||||||||||||||||||       ||||       |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2982355 tttaaagatgacctcaactgtcttccttccctcaaaaaaatcactttttttcattgtgacctaaatgcattgccatattggatatgcaacatctcatcac 2982454  T
Q  230 ttcaacacattgaggtgtgcggttgtagagattt--------tgcctgaggcaataccacgtcttacaaacttacataccttagaaatcattgaatgtcc 321  Q
    ||||||||||||||||||||||||||||||||||        ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2982455 ttcaacacattgaggtgtgcggttgtagagatttggaagatctgcctgaggcaatgccacgtcttacaaacttacataccttagaaatcattgaatgtcc 2982554  T
Q  322 attcttagctcaacaatgt 340  Q
    |||||||||||||||||||    
T  2982555 attcttagctcaacaatgt 2982573  T

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Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 30 - 158
Target Start/End: Complemental strand, 2709388 - 2709263
Alignment:
Q  30 aaaagccccaaaggattggtttaaaaatcttacttctcttgagaatcttgaattttactttctttcaagtcgaaagtttcaagtaattgaaatgtggtgg 129  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||| | ||||||||||||   |||  ||| || ||||||||||||||   ||||    
T  2709388 aaaagctccgaaggattggtttaaaaatcttacttctcttgagaatcttcacttttactttcttatgagtaaaaacttacaagtaattgaaat---gtgg 2709292  T
Q  130 tttaaagatgacctcaactgtcttccttc 158  Q
    ||||||||| ||||||| |||||||||||    
T  2709291 tttaaagataacctcaattgtcttccttc 2709263  T

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Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 36 - 158
Target Start/End: Complemental strand, 9849199 - 9849080
Alignment:
Q  36 cccaaaggattggtttaaaaatcttacttctcttgagaatcttgaattttactttctttcaagtcgaaagtttcaagtaattgaaatgtggtggtttaaa 135  Q
    |||||| ||||||||  ||||||| || ||||||||||||||||| ||||||||| ||||||||  | ||||||||||||||||||||   |||||||||    
T  9849199 cccaaaagattggttgcaaaatctcacatctcttgagaatcttgatttttactttgtttcaagtgaacagtttcaagtaattgaaatg---tggtttaaa 9849103  T
Q  136 gatgacctcaactgtcttccttc 158  Q
    |||| |||||| || ||||||||    
T  9849102 gatggcctcaattgccttccttc 9849080  T

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Target: chr8; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 36 - 161
Target Start/End: Original strand, 3004351 - 3004473
Alignment:
Q  36 cccaaaggattggtttaaaaatcttacttctcttgagaatcttgaattttactttctttcaagtcgaaagtttcaagtaattgaaatgtggtggtttaaa 135  Q
    ||||||| |||||||  ||||||| ||||||||||||||||||||||||| |||||||||||||| | | ||| ||||||||||   |  ||||||||||    
T  3004351 cccaaagaattggttgcaaaatctcacttctcttgagaatcttgaatttttctttctttcaagtcaacaatttgaagtaattga---gacgtggtttaaa 3004447  T
Q  136 gatgacctcaactgtcttccttccct 161  Q
    |||||| ||| || ||||||||||||    
T  3004448 gatgacttcatctatcttccttccct 3004473  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 191 - 328
Target Start/End: Complemental strand, 2709221 - 2709076
Alignment:
Q  191 taaatgcattgccatattggatatgcaacatctcatcacttcaacacattgaggtgtgcggttgtagagattt--------tgcctgaggcaataccacg 282  Q
    |||| ||||| ||| |||||||||||||||||||||||||||| ||  || |||||   |  || ||||||||        ||||||| | ||| |||||    
T  2709221 taaaggcattaccagattggatatgcaacatctcatcacttcagcatcttaaggtgaaggaatgcagagatttggtagatctgcctgacggaatgccacg 2709122  T
Q  283 tcttacaaacttacataccttagaaatcattgaatgtccattctta 328  Q
     |||||||| |||||||||||||||||||||| ||||||| |||||    
T  2709121 ccttacaaaattacataccttagaaatcattggatgtccactctta 2709076  T

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Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 235
Target Start/End: Complemental strand, 2707970 - 2707923
Alignment:
Q  188 acctaaatgcattgccatattggatatgcaacatctcatcacttcaac 235  Q
    ||||||| ||||| ||| ||||||||||||||||||||||||||||||    
T  2707970 acctaaaggcattaccagattggatatgcaacatctcatcacttcaac 2707923  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 329
Target Start/End: Original strand, 2991581 - 2991631
Alignment:
Q  279 cacgtcttacaaacttacataccttagaaatcattgaatgtccattcttag 329  Q
    ||||||||||||||||||| |||||||||||||||| |||| || ||||||    
T  2991581 cacgtcttacaaacttacacaccttagaaatcattggatgttcaatcttag 2991631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 311
Target Start/End: Complemental strand, 2707871 - 2707839
Alignment:
Q  279 cacgtcttacaaacttacataccttagaaatca 311  Q
    |||||||||||||||||||||||||||||||||    
T  2707871 cacgtcttacaaacttacataccttagaaatca 2707839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 36 - 75
Target Start/End: Original strand, 2991339 - 2991378
Alignment:
Q  36 cccaaaggattggtttaaaaatcttacttctcttgagaat 75  Q
    ||||||||||||||| ||||||||||||||||| ||||||    
T  2991339 cccaaaggattggttgaaaaatcttacttctctcgagaat 2991378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 9849047 - 9848999
Alignment:
Q  188 acctaaatgcattgccatattggatatgcaacatctcatcacttcaaca 236  Q
    |||||||| || ||||||||||| |||||||| | ||||||||||||||    
T  9849047 acctaaatacactgccatattgggtatgcaacctatcatcacttcaaca 9848999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 36 - 162
Target Start/End: Original strand, 18357748 - 18357871
Alignment:
Q  36 cccaaaggattggtttaaaaatcttacttctcttgagaatcttgaattttactttctttcaagtcgaaagtttcaagtaattgaaatgtggtggtttaaa 135  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||| ||  ||| | | ||||||| | | ||| |||||||||||||   ||||||||||    
T  18357748 cccaaaggattggttgaaaaatcttacttctctcgagaatcttgacttagactctttgtcaagtcaacaatttgaagtaattgaaat---gtggtttaaa 18357844  T
Q  136 gatgacctcaactgtcttccttccctc 162  Q
    ||||||||||  |||||||||||||||    
T  18357845 gatgacctcatttgtcttccttccctc 18357871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 18357981 - 18358031
Alignment:
Q  264 tgcctgaggcaataccacgtcttacaaacttacataccttagaaatcattg 314  Q
    ||||||| | ||| |||||||||||||||||||| ||||||||||||||||    
T  18357981 tgcctgaaggaatgccacgtcttacaaacttacacaccttagaaatcattg 18358031  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 233
Target Start/End: Original strand, 18357900 - 18357942
Alignment:
Q  191 taaatgcattgccatattggatatgcaacatctcatcacttca 233  Q
    |||| ||||| ||| ||||||||||||||||||||||||||||    
T  18357900 taaaggcattaccagattggatatgcaacatctcatcacttca 18357942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 30 - 162
Target Start/End: Complemental strand, 10753777 - 10753648
Alignment:
Q  30 aaaagccccaaaggattggtttaaaaatcttacttctcttgagaatcttgaattttactttctttcaagtcgaaagtttcaagtaattgaaatgtggtgg 129  Q
    |||||| || ||||||||||||||||||||||||||||| ||| ||||||| ||| ||  ||||||||||| |   ||||||||||||||||||   |||    
T  10753777 aaaagctccgaaggattggtttaaaaatcttacttctctcgaggatcttgactttgacaatctttcaagtcaaggatttcaagtaattgaaatg---tgg 10753681  T
Q  130 tttaaagatgacctcaactgtcttccttccctc 162  Q
    |||||| |||||| ||| ||||||| |||||||    
T  10753680 tttaaaaatgaccccaattgtcttcgttccctc 10753648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 328
Target Start/End: Complemental strand, 10753518 - 10753471
Alignment:
Q  281 cgtcttacaaacttacataccttagaaatcattgaatgtccattctta 328  Q
    |||||||| |||||| | |||||||||||||||||||||||| |||||    
T  10753518 cgtcttaccaacttaaaaaccttagaaatcattgaatgtccactctta 10753471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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