View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1114_high_61 (Length: 340)
Name: NF1114_high_61
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_high_61 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 6 - 340
Target Start/End: Complemental strand, 55178838 - 55178504
Alignment:
| Q |
6 |
gtctgttgtacaatgggtaatgaacttaccggatcgctcaacacacaaatataataacaatcgacacagttcatctcaaattgagggccagagctataaa |
105 |
Q |
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| T |
55178838 |
gtctgttgtacaatgggtaatgaacttaccggatcgctcaacacacaaatataataacaatcgacacagttcatctcaaattgagggccagagctataaa |
55178739 |
T |
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| Q |
106 |
aatgttattagtttcagtagctgcaagtggtttatctttgaggttctcaactcttgcacttgtcaattctcttcaggtcagactcataacatcactgctg |
205 |
Q |
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| T |
55178738 |
aatgttattagtttcagtagctgcaagtggtttatctttgaggttctcaactcttgcacttgtcaattctcttcaggtcggactcataacatcactgctg |
55178639 |
T |
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| Q |
206 |
ctaattagtactagtttaccatacatgaagagagttcttatttatgaattctcaattttactgtttttaattgtattattattacagaaaatgtgattgg |
305 |
Q |
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| T |
55178638 |
ctaattagtactagtttaccatacatgaagaaagttcttatttatgaattctcaattttactgtttttaattgtattattattacagaaaatgtgattgg |
55178539 |
T |
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| Q |
306 |
aattggagggagcaatcacgtgtacagaggaaccc |
340 |
Q |
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| T |
55178538 |
aattggagggagcaatcgcgtgtacagaggaaccc |
55178504 |
T |
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