View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1114_high_62 (Length: 339)
Name: NF1114_high_62
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_high_62 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 83 - 329
Target Start/End: Original strand, 2658950 - 2659197
Alignment:
| Q |
83 |
atttcttcgttatttacagattagcgtttgatttataaaaagattgctcgcattactaattgagtttcaattttgtatatgttgttaggtgaataagaag |
182 |
Q |
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| T |
2658950 |
atttcttggttatttatagattagcgtttgatttataaaaagattgctcgcattactaattgagtttcaattttgtatatgttgttaggtgaataagaag |
2659049 |
T |
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| Q |
183 |
atttaaatggcgagaggaagtggataccaccaacaagttgaagtcgggctac-ttcgtattagtcgatgttattttgacatacttgcttcactaaactga |
281 |
Q |
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| T |
2659050 |
atttaaatggcgagaggaagtggataccaccaacaagttgaagtcgggctactttcgtattagtcgatgttattttgacatacttgcttcactaaactga |
2659149 |
T |
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| Q |
282 |
acaaaacttgtttacacattttgctgttacttttggccacatttacct |
329 |
Q |
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| T |
2659150 |
acaaaacttgtttacacattttgctgttacttttggccacatttacct |
2659197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 2658888 - 2658922
Alignment:
| Q |
1 |
atgttgcatctgtctgagtgtcaagagttaatgtc |
35 |
Q |
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| T |
2658888 |
atgttgcatctgtctgagtgtcaagagttaatgtc |
2658922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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