View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1114_high_63 (Length: 338)

Name: NF1114_high_63
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1114_high_63
NF1114_high_63
[»] chr6 (13 HSPs)
chr6 (1-141)||(27965775-27965915)
chr6 (1-142)||(31654852-31654993)
chr6 (1-142)||(17868395-17868536)
chr6 (1-142)||(17878178-17878319)
chr6 (1-146)||(15071107-15071252)
chr6 (1-142)||(12271376-12271517)
chr6 (1-146)||(11369198-11369344)
chr6 (1-142)||(26519871-26520012)
chr6 (22-142)||(10233040-10233160)
chr6 (1-74)||(31470978-31471051)
chr6 (1-109)||(20143595-20143703)
chr6 (1-109)||(22189136-22189244)
chr6 (7-87)||(10998046-10998126)
[»] chr4 (23 HSPs)
chr4 (193-308)||(30132440-30132554)
chr4 (1-143)||(44341784-44341926)
chr4 (7-142)||(44856970-44857105)
chr4 (1-142)||(43285413-43285554)
chr4 (1-143)||(32768389-32768531)
chr4 (1-142)||(52463235-52463376)
chr4 (27-141)||(19244503-19244617)
chr4 (1-142)||(951668-951809)
chr4 (1-142)||(34031059-34031199)
chr4 (3-142)||(41361972-41362111)
chr4 (7-88)||(32594799-32594880)
chr4 (55-142)||(41882605-41882692)
chr4 (24-139)||(51400512-51400627)
chr4 (1-87)||(17544166-17544252)
chr4 (1-87)||(20034004-20034090)
chr4 (7-87)||(3409835-3409915)
chr4 (43-142)||(16624043-16624142)
chr4 (1-87)||(27870312-27870398)
chr4 (1-87)||(47295880-47295966)
chr4 (1-87)||(2323511-2323597)
chr4 (7-105)||(9454488-9454586)
chr4 (62-111)||(41831268-41831317)
chr4 (1-57)||(34858344-34858400)
[»] chr7 (15 HSPs)
chr7 (1-144)||(7505874-7506017)
chr7 (1-143)||(35710590-35710732)
chr7 (1-105)||(31271504-31271608)
chr7 (1-142)||(10993606-10993747)
chr7 (1-78)||(41202612-41202689)
chr7 (1-87)||(1873946-1874032)
chr7 (1-87)||(23025463-23025549)
chr7 (7-87)||(4267652-4267732)
chr7 (1-55)||(19106617-19106671)
chr7 (1-59)||(49113357-49113415)
chr7 (43-142)||(18833681-18833780)
chr7 (61-111)||(8781547-8781597)
chr7 (1-87)||(17471338-17471424)
chr7 (1-87)||(17581790-17581876)
chr7 (81-142)||(40921241-40921302)
[»] chr3 (18 HSPs)
chr3 (1-142)||(19976430-19976572)
chr3 (10-143)||(11486222-11486355)
chr3 (1-142)||(6884246-6884387)
chr3 (1-142)||(43745832-43745973)
chr3 (1-88)||(50737162-50737249)
chr3 (1-88)||(50775606-50775693)
chr3 (2-87)||(33986132-33986217)
chr3 (1-148)||(20511261-20511406)
chr3 (1-88)||(46312165-46312252)
chr3 (1-142)||(27877831-27877972)
chr3 (1-56)||(24311737-24311792)
chr3 (1-87)||(46219404-46219490)
chr3 (1-74)||(43736584-43736657)
chr3 (43-142)||(49507906-49508005)
chr3 (1-74)||(21075613-21075686)
chr3 (1-37)||(21390525-21390561)
chr3 (43-142)||(51884763-51884862)
chr3 (63-111)||(24570325-24570373)
[»] chr5 (22 HSPs)
chr5 (1-142)||(37205226-37205367)
chr5 (15-142)||(36867270-36867398)
chr5 (1-142)||(6238600-6238741)
chr5 (1-142)||(36016557-36016698)
chr5 (7-111)||(4970221-4970325)
chr5 (3-87)||(33907553-33907637)
chr5 (4-142)||(75638-75775)
chr5 (1-142)||(6900310-6900451)
chr5 (1-105)||(31230829-31230933)
chr5 (4-145)||(42093184-42093325)
chr5 (1-143)||(4695471-4695613)
chr5 (1-143)||(9996548-9996685)
chr5 (1-87)||(21732022-21732108)
chr5 (4-142)||(38355684-38355822)
chr5 (1-74)||(35038473-35038546)
chr5 (1-87)||(1845710-1845796)
chr5 (21-143)||(24477703-24477825)
chr5 (1-87)||(42860024-42860110)
chr5 (1-84)||(3296878-3296962)
chr5 (1-87)||(6955502-6955587)
chr5 (61-111)||(21162672-21162722)
chr5 (61-102)||(17016542-17016583)
[»] chr2 (18 HSPs)
chr2 (1-146)||(38837279-38837424)
chr2 (6-143)||(38571387-38571524)
chr2 (1-145)||(21104305-21104449)
chr2 (1-142)||(15613306-15613446)
chr2 (1-88)||(26555852-26555939)
chr2 (1-85)||(4469922-4470006)
chr2 (7-142)||(25458761-25458896)
chr2 (1-87)||(9471645-9471731)
chr2 (1-87)||(40000507-40000593)
chr2 (1-87)||(40860752-40860838)
chr2 (7-142)||(15560245-15560380)
chr2 (1-87)||(25096584-25096670)
chr2 (55-142)||(30556195-30556282)
chr2 (91-145)||(10710414-10710468)
chr2 (1-67)||(20921962-20922028)
chr2 (1-87)||(29205707-29205793)
chr2 (5-87)||(17921502-17921583)
chr2 (63-111)||(23334109-23334157)
[»] chr8 (15 HSPs)
chr8 (1-142)||(6143525-6143666)
chr8 (7-142)||(9201726-9201866)
chr8 (1-142)||(2350420-2350561)
chr8 (1-142)||(30436014-30436156)
chr8 (1-142)||(35812982-35813123)
chr8 (43-144)||(32018884-32018985)
chr8 (1-84)||(45450896-45450979)
chr8 (1-83)||(15244615-15244697)
chr8 (1-142)||(23221730-23221871)
chr8 (1-87)||(3940969-3941055)
chr8 (1-142)||(3653974-3654115)
chr8 (92-144)||(38895283-38895335)
chr8 (61-111)||(957524-957574)
chr8 (9-135)||(29893747-29893867)
chr8 (1-57)||(28968959-28969015)
[»] chr1 (21 HSPs)
chr1 (1-88)||(43263174-43263261)
chr1 (3-87)||(4221868-4221952)
chr1 (1-105)||(46158373-46158477)
chr1 (1-142)||(33189326-33189467)
chr1 (1-142)||(45040110-45040251)
chr1 (8-142)||(700471-700604)
chr1 (1-87)||(45756955-45757040)
chr1 (2-142)||(30534153-30534285)
chr1 (1-143)||(9660487-9660624)
chr1 (5-87)||(17332100-17332181)
chr1 (1-83)||(24682295-24682377)
chr1 (99-145)||(31488770-31488816)
chr1 (1-87)||(43780885-43780971)
chr1 (7-146)||(32058147-32058286)
chr1 (43-142)||(40411981-40412080)
chr1 (1-87)||(12749890-12749976)
chr1 (91-145)||(26467411-26467465)
chr1 (4-86)||(45566556-45566637)
chr1 (91-148)||(23973634-23973691)
chr1 (1-69)||(6502018-6502086)
chr1 (1-69)||(47188278-47188346)
[»] scaffold0564 (1 HSPs)
scaffold0564 (1-142)||(9780-9921)
[»] scaffold0495 (1 HSPs)
scaffold0495 (22-142)||(9764-9884)
[»] scaffold0041 (1 HSPs)
scaffold0041 (81-142)||(51793-51854)


Alignment Details
Target: chr6 (Bit Score: 101; Significance: 5e-50; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 27965915 - 27965775
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgg 100  Q
    ||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||| ||||||||| |||| || ||||||||||||||||||| ||    
T  27965915 cccgggagcccatatagggccgtgctcgggctctaatattccagcccgtatttaaaccgggctttttagcccggcccaaaaaagcccgctgcccgttcgg 27965816  T
Q  101 gccggcccgaaacggaccgggtagcccgttttgacagctct 141  Q
    || |||||| |||||||||||||||||||||||||||||||    
T  27965815 gctggcccggaacggaccgggtagcccgttttgacagctct 27965775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 31654993 - 31654852
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgta-tttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttg 99  Q
    ||||||||||||||||||| ||||||||||||| | ||||||||||| || ||||||||| ||||||| | |||| |||||| |||||||  ||||        
T  31654993 cccgggagcccgtatagggccgggctcgggctcaattattccagcccatattttaaaccgggctttttggcccggccctaaatagcccgcaacccg-acc 31654895  T
Q  100 ggccggcccgaaacggaccgggtagcccgttttgacagctcta 142  Q
    |||||| ||||||||| ||||||||||||||||||||||||||    
T  31654894 ggccgggccgaaacgggccgggtagcccgttttgacagctcta 31654852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 17868536 - 17868395
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgg 100  Q
    ||||||||||||||||||  ||| ||| ||||||| ||||||||||||||||||||  | ||||||||| |||| ||||||||||||||  |||| |  |    
T  17868536 cccgggagcccgtataggaccggactcaggctctattattccagcccgtatttaaatagggctttttagcccggccctaaaaagcccgcaacccgctcag 17868437  T
Q  101 gccggcccgaaacggaccgggtagcccgttttgacagctcta 142  Q
     | ||||| ||| || ||||||||||||||||||||||||||    
T  17868436 ccaggcccaaaatgggccgggtagcccgttttgacagctcta 17868395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 17878319 - 17878178
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgg 100  Q
    ||||||||||||||||||  ||| ||| ||||||| ||||||||||||||||||||  | ||||||||| |||| ||||||||||||||  |||| |  |    
T  17878319 cccgggagcccgtataggaccggactcaggctctattattccagcccgtatttaaatagggctttttagcccggccctaaaaagcccgcaacccgctcag 17878220  T
Q  101 gccggcccgaaacggaccgggtagcccgttttgacagctcta 142  Q
     | ||||| ||| || ||||||||||||||||||||||||||    
T  17878219 ccgggcccaaaatgggccgggtagcccgttttgacagctcta 17878178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 15071107 - 15071252
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgg 100  Q
    ||||||||||||||||||| |||||||||||||   | || |||||| |||| |||||| ||||||||| |||| ||| ||||||||   ||||| |  |    
T  15071107 cccgggagcccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagcccttggcccggtccg 15071206  T
Q  101 gccggcccgaaacggaccgggtagcccgttttgacagctctactta 146  Q
    ||||  || ||||||||||||  |||||||||||||||||||||||    
T  15071207 gccgagcctaaacggaccgggccgcccgttttgacagctctactta 15071252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 12271517 - 12271376
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgg 100  Q
    |||||||||||||| |||| ||||||||||||||| | || |||||| |||| ||||||  |||||||| |||||||| ||||||||   ||||  ||||    
T  12271517 cccgggagcccgtaaagggccgggctcgggctctattttttcagcccatattcaaaccggactttttagcccggtccttaaaagcccttggcccagttgg 12271418  T
Q  101 gccggcccgaaacggaccgggtagcccgttttgacagctcta 142  Q
    ||||| || ||| || |||||  |||| ||||||||||||||    
T  12271417 gccgggcctaaatgggccgggccgcccattttgacagctcta 12271376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 11369344 - 11369198
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctc-taatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttg 99  Q
    ||||||||||||||||||| ||||||||||||| |  | || |||||| |||| |||||| ||||||||| |||| ||| ||||||||   |||||   |    
T  11369344 cccgggagcccgtatagggccgggctcgggctcatttttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagcccttggcccggccg 11369245  T
Q  100 ggccggcccgaaacggaccgggtagcccgttttgacagctctactta 146  Q
    |||| | || |||||| |||||  |||||||||||||||||||||||    
T  11369244 ggccaggcctaaacgggccgggccgcccgttttgacagctctactta 11369198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 26519871 - 26520012
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgg 100  Q
    ||||||| ||||||||||||||||||||||||||| | || |||||| |||| |||| | ||||||| | |||| ||| ||||||||   |||||   ||    
T  26519871 cccgggaacccgtatagggtcgggctcgggctctatttttgcagcccatattcaaactgggctttttcgcccggcccttaaaagcccttggcccggccgg 26519970  T
Q  101 gccggcccgaaacggaccgggtagcccgttttgacagctcta 142  Q
    ||||| || |||||| || ||   ||||||||||||||||||    
T  26519971 gccgggcctaaacgggccaggccacccgttttgacagctcta 26520012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 142
Target Start/End: Complemental strand, 10233160 - 10233040
Alignment:
Q  22 gggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgggccggcccgaaacggaccggg 121  Q
    |||||||||||||| ||||  ||| ||||||||||| | ||||||||||||| |||||||||| ||| |   || |||||  |||| ||||||||  |||    
T  10233160 gggctcgggctctattatttgagctcgtatttaaacagggctttttagtccgatcctaaaaagtccgttattcgcttgggttggcctgaaacggattggg 10233061  T
Q  122 tagcccgttttgacagctcta 142  Q
    || |||||||||||| |||||    
T  10233060 taacccgttttgacaactcta 10233040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 31471051 - 31470978
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccgg 74  Q
    ||||||||||||||||||| ||||||||||||||| | || |||||| |||| ||| || ||||||||| ||||    
T  31471051 cccgggagcccgtatagggccgggctcgggctctatttttgcagcccatattcaaatcgggctttttagcccgg 31470978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 20143595 - 20143703
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgg 100  Q
    ||||| ||||||||||||| ||||||||||||||  | |||  |||| ||||||||| | ||||||||| |||| ||| |||||||||  |||| || ||    
T  20143595 cccggaagcccgtatagggccgggctcgggctctctttttcaggcccatatttaaactgggctttttagcccggccctcaaaagcccgtggcccattcgg 20143694  T
Q  101 gccggcccg 109  Q
    | |||||||    
T  20143695 gtcggcccg 20143703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 22189244 - 22189136
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgg 100  Q
    ||||| ||||||||||||| ||||||||||||||  | |||  |||| ||||||||| | ||||||||| |||| ||| |||||||||  |||| || ||    
T  22189244 cccggaagcccgtatagggccgggctcgggctctctttttcaggcccatatttaaactgggctttttagcccggccctcaaaagcccgtggcccattcgg 22189145  T
Q  101 gccggcccg 109  Q
    | |||||||    
T  22189144 gtcggcccg 22189136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 10998046 - 10998126
Alignment:
Q  7 agcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagccc 87  Q
    ||||||||||||| |||||||||||||   | || |||||| |||| ||||||  |||||||| |||| ||| ||||||||    
T  10998046 agcccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccggactttttagcccggcccttaaaagccc 10998126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 193 - 308
Target Start/End: Original strand, 30132440 - 30132554
Alignment:
Q  193 gtgtgtatgtatgtattctttttgggtcaaactatttaagtcaaatcacttggttgccaaaaaatatatttcattttccatgcttccattagacttattc 292  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  30132440 gtgtgtatatat-tattctttttgggtcaaactatttaagtcaaatcacttggttgctaaaaaatatatttcattttccatgcttccattagacttattc 30132538  T
Q  293 ttctaaattcaagcca 308  Q
    ||||||||||||||||    
T  30132539 ttctaaattcaagcca 30132554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 44341784 - 44341926
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgg 100  Q
    ||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||| |||||| || ||||||||||||||||||| ||||||||||    
T  44341784 cccgggagcccgtatagggccgggctcgggctctattatttcagcccgtatttaaaccgggcttttcagcccggtcctaaaaagcccgcagcccgtttgg 44341883  T
Q  101 gccggcccgaaacggaccgggtagcccgttttgacagctctac 143  Q
    |||||||| ||| ||  ||||||||||||||||| ||||||||    
T  44341884 gccggcccaaaaagggtcgggtagcccgttttgatagctctac 44341926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 142
Target Start/End: Complemental strand, 44857105 - 44856970
Alignment:
Q  7 agcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgggccggc 106  Q
    ||||||||||||| |||||||  | |||| ||||||||||||||||||||||| |||| |||| |||||||||||| ||||||   | ||| ||| ||||    
T  44857105 agcccgtatagggccgggctcaagatctattattccagcccgtatttaaaccgggcttattagcccggtcctaaaatgcccgcaatcggttcgggtcggc 44857006  T
Q  107 ccgaaacggaccgggtagcccgttttgacagctcta 142  Q
    |||||||||||||| | |||||||||||||||||||    
T  44857005 ccgaaacggaccggattgcccgttttgacagctcta 44856970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 43285554 - 43285413
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgg 100  Q
    ||||||||||||||||||| ||||||||||||||| | || |||||| |||| |||||| ||||||||| |||| ||| ||||||||   ||||||  ||    
T  43285554 cccgggagcccgtatagggccgggctcgggctctatttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagcccttggcccgtccgg 43285455  T
Q  101 gccggcccgaaacggaccgggtagcccgttttgacagctcta 142  Q
    ||||| || |||||| |||||  |||||||||||||||||||    
T  43285454 gccgggcctaaacgggccgggccgcccgttttgacagctcta 43285413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 32768389 - 32768531
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgg 100  Q
    ||||||||||||||||||| || |||||||||||| | |||  |||| |||||||| || ||||||||| |||| ||| ||||| ||| |||||||| ||    
T  32768389 cccgggagcccgtatagggccgtgctcgggctctatttttcaggcccatatttaaatcgggctttttagcccggccctcaaaagtccgttgcccgttcgg 32768488  T
Q  101 gccggcccgaaacggaccgggtagcccgttttgacagctctac 143  Q
    ||||| || |||||| ||||   ||||||||||||||||||||    
T  32768489 gccgggcctaaacgggccggaccgcccgttttgacagctctac 32768531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 52463376 - 52463235
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgg 100  Q
    ||||||||||||||||||| ||||||||||||||| | || |||||| |||| ||| || ||||||||| |||| ||| ||||||||   ||||| | ||    
T  52463376 cccgggagcccgtatagggccgggctcgggctctatttttgcagcccatattcaaatcgggctttttagcccggcccttaaaagcccttggcccgatcgg 52463277  T
Q  101 gccggcccgaaacggaccgggtagcccgttttgacagctcta 142  Q
    ||||| || |||||| |||||  |||||||||||||||||||    
T  52463276 gccgggcctaaacgggccgggccgcccgttttgacagctcta 52463235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 27 - 141
Target Start/End: Original strand, 19244503 - 19244617
Alignment:
Q  27 cgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgggccggcccgaaacggaccgggtagcc 126  Q
    |||||||| |||||||||||||||||||||||| | ||||||| |||  || ||||| |||||| |||||| | ||| ||||||||||| |||||||||     
T  19244503 cgggctctgatattccagcccgtatttaaaccgggttttttagcccgacccaaaaaaacccgctacccgttcgagcccgcccgaaacgggccgggtagct 19244602  T
Q  127 cgttttgacagctct 141  Q
    |||||||| ||||||    
T  19244603 cgttttgatagctct 19244617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 951668 - 951809
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgg 100  Q
    ||||||||||||||||||| |||||||||||||   | || |||||| |||| |||||| ||||||||| |||| ||| ||||||||   |||||   ||    
T  951668 cccgggagcccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagcccttggcccggccgg 951767  T
Q  101 gccggcccgaaacggaccgggtagcccgttttgacagctcta 142  Q
    ||||| || |||||| |||||  |||||||||||||||||||    
T  951768 gccgggcctaaacgggccgggccgcccgttttgacagctcta 951809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 34031059 - 34031199
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgg 100  Q
    |||||||||| |||||||| |||||||||||||||||||||  |||| | ||| ||| | ||||||| |||||| || | ||||||||  ||||||| ||    
T  34031059 cccgggagcctgtatagggccgggctcgggctctaatattcatgcccatttttcaacagggctttttggtccggcccgataaagcccgaagcccgttagg 34031158  T
Q  101 gccggcccgaaacggaccgggtagcccgttttgacagctcta 142  Q
    ||| |||| |||||| |||||  | |||||||||||||||||    
T  34031159 gccagccctaaacggcccgggccg-ccgttttgacagctcta 34031199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 142
Target Start/End: Original strand, 41361972 - 41362111
Alignment:
Q  3 cgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgggc 102  Q
    |||||||| |||||||| ||||||||||||| | ||||||||||| ||||||||  | | | ||||| |||| | ||||||||||| ||||||||  |      
T  41361972 cgggagcctgtatagggccgggctcgggctcaattattccagcccttatttaaatagggatgtttagcccggccttaaaaagcccgttgcccgttcagat 41362071  T
Q  103 cggcccgaaacggaccgggtagcccgttttgacagctcta 142  Q
    |||||||||||||   || |||||| ||||||||||||||    
T  41362072 cggcccgaaacgggttggatagcccattttgacagctcta 41362111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 7 - 88
Target Start/End: Original strand, 32594799 - 32594880
Alignment:
Q  7 agcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccg 88  Q
    ||||||||||||| |||||||| |||| | ||||||||||| ||||||||||| |||||| || |||| || ||||||||||    
T  32594799 agcccgtatagggccgggctcgagctcaattattccagcccatatttaaaccgggcttttcagcccggcccgaaaaagcccg 32594880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 55 - 142
Target Start/End: Complemental strand, 41882692 - 41882605
Alignment:
Q  55 aaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgggccggcccgaaacggaccgggtagcccgttttgacagctcta 142  Q
    ||||||||||||| | |||| || | ||||||||  ||||||| |||||||||| |||||| |||||  |||||||||||||||||||    
T  41882692 aaccgagctttttggcccggcccgataaagcccgaagcccgttagggccggccctaaacgggccgggccgcccgttttgacagctcta 41882605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 139
Target Start/End: Complemental strand, 51400627 - 51400512
Alignment:
Q  24 gctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgggccggcccgaaacggaccgggta 123  Q
    |||||||||||| ||||||||||  |||||||||   ||||||||| ||   ||| ||||||| ||  |||| | || ||||||||||| || |||||||    
T  51400627 gctcgggctctattattccagcctatatttaaacaaggctttttagcccaaccctgaaaagcctgcaacccgctcggcccggcccgaaatgggccgggta 51400528  T
Q  124 gcccgttttgacagct 139  Q
    ||||||||||||||||    
T  51400527 gcccgttttgacagct 51400512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 17544166 - 17544252
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagccc 87  Q
    ||||||||||||||||||| |||||||||||||   | || |||||| |||| |||||| ||||||||| |||| ||| ||||||||    
T  17544166 cccgggagcccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagccc 17544252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 20034090 - 20034004
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagccc 87  Q
    ||||||||||||||||||| |||||||||||||   | || |||||| |||| |||||| ||||||||| |||| ||| ||||||||    
T  20034090 cccgggagcccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagccc 20034004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 7 - 87
Target Start/End: Complemental strand, 3409915 - 3409835
Alignment:
Q  7 agcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagccc 87  Q
    ||||||||||||| ||||||||||||||| | || |||||| |||| |||||  ||||||||| |||| ||| ||||||||    
T  3409915 agcccgtatagggccgggctcgggctctatttttgcagcccatattcaaaccaggctttttagcccggcccttaaaagccc 3409835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 142
Target Start/End: Original strand, 16624043 - 16624142
Alignment:
Q  43 agcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgggccggcccgaaacggaccgggtagcccgttttgacagctcta 142  Q
    ||||||| ||| ||||| ||||||| | |||  || | ||||||||  ||||||| |||||||||| |||||| |||||  |||||||||||||||||||    
T  16624043 agcccgtttttcaaccgggctttttggcccgacccgataaagcccgaagcccgttagggccggccccaaacgggccgggccgcccgttttgacagctcta 16624142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 27870312 - 27870398
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagccc 87  Q
    ||||||||||||||||||| |||||||||||||   | || | |||| |||| |||||| ||||||||| |||| ||| ||||||||    
T  27870312 cccgggagcccgtatagggccgggctcgggctcattttttgcggcccatattcaaaccgggctttttagcccggcccttaaaagccc 27870398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 47295880 - 47295966
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagccc 87  Q
    |||||| |||||||||||| |||||||||||||   | || |||||| |||| |||||| ||||||||| |||| ||| ||||||||    
T  47295880 cccgggggcccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagccc 47295966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 2323597 - 2323511
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagccc 87  Q
    ||||||||||||||||||| |||||||||||||   | || |||||| |||| |||||| | ||||||| |||  ||| ||||||||    
T  2323597 cccgggagcccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggttttttagcccgacccttaaaagccc 2323511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 105
Target Start/End: Complemental strand, 9454586 - 9454488
Alignment:
Q  7 agcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgggccgg 105  Q
    ||||| |||||||  |||||||||||| | ||||||| ||| |||||||| || | ||||||| |||| |||  |||||||||||| || | |||||||    
T  9454586 agcccatatagggctgggctcgggctcaattattccaacccatatttaaatcgggttttttagcccggccctgcaaagcccgctgctcgatcgggccgg 9454488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 111
Target Start/End: Original strand, 41831268 - 41831317
Alignment:
Q  62 ctttttagtccggtcctaaaaagcccgctgcccgtttgggccggcccgaa 111  Q
    ||||||| ||||||||||||||||||||| |||||| ||||  |||||||    
T  41831268 ctttttaatccggtcctaaaaagcccgctacccgttagggctagcccgaa 41831317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 34858400 - 34858344
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaac 57  Q
    ||||| |||||||| |||| ||||||||||||||| | ||||||||| |||| ||||    
T  34858400 cccggaagcccgtacagggccgggctcgggctctatttttccagcccatattcaaac 34858344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 5e-47; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 7505874 - 7506017
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgg 100  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||||||||||| | ||||||||| ||||  | ||||| ||||||||||||| ||    
T  7505874 cccgggagcccgtatagggccgagctcgggctctaatattccagcccgtatttaaacagggctttttagcccggctcgaaaaaacccgctgcccgttcgg 7505973  T
Q  101 gccggcccgaaacggaccgggtagcccgttttgacagctctact 144  Q
    |||||||||||||||  |||||||||||||||||||||||||||    
T  7505974 gccggcccgaaacggggcgggtagcccgttttgacagctctact 7506017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 35710590 - 35710732
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgg 100  Q
    ||||||||||||||||||| ||||||||||||| | ||||||||||| ||||||||  | ||||||||| |||| ||||||||||||| | ||||||| |    
T  35710590 cccgggagcccgtatagggccgggctcgggctcaattattccagcccttatttaaatagggctttttagcccggccctaaaaagcccgttacccgtttag 35710689  T
Q  101 gccggcccgaaacggaccgggtagcccgttttgacagctctac 143  Q
     |||||||||||||| |||||||||||||||||||||||||||    
T  35710690 cccggcccgaaacgggccgggtagcccgttttgacagctctac 35710732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 31271608 - 31271504
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgg 100  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||  |||||||| |||| || |||||||||||| |||||| ||    
T  31271608 cccgggagcccgtatagggccgggctcgggctctaatatttcagcccgtatttaaaccggactttttagcccggcccgaaaaagcccgctacccgttcgg 31271509  T
Q  101 gccgg 105  Q
    |||||    
T  31271508 gccgg 31271504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 10993606 - 10993747
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgg 100  Q
    ||||||||||||||||||| |||||||||||||   | || |||||| |||| |||||| ||||||||| |||| ||| ||||||||   |||||   ||    
T  10993606 cccgggagcccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagcccttggcccggccgg 10993705  T
Q  101 gccggcccgaaacggaccgggtagcccgttttgacagctcta 142  Q
    ||||| || |||||| |||||  |||||||||||||||||||    
T  10993706 gccgggcctaaacgggccgggccgcccgttttgacagctcta 10993747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 41202612 - 41202689
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcct 78  Q
    ||||||||| |||| |||| ||||||||||||||| | ||||||||| |||| |||||| ||||||||||||||||||    
T  41202612 cccgggagctcgtaaagggccgggctcgggctctatttttccagcccatattcaaaccgggctttttagtccggtcct 41202689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 1873946 - 1874032
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagccc 87  Q
    ||||||||||||||||||| |||||||||||||   | || |||||| |||| |||||| ||||||||| |||| ||| ||||||||    
T  1873946 cccgggagcccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagccc 1874032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 23025463 - 23025549
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagccc 87  Q
    ||||||||||||||||||| |||||||||||||   | || |||||| |||| |||||| ||||||||| |||| ||| ||||||||    
T  23025463 cccgggagcccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagccc 23025549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 4267652 - 4267732
Alignment:
Q  7 agcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagccc 87  Q
    |||||||| |||| ||||||||||||||| | ||||||||| |||| |||||| ||||||||| |||  ||| ||||||||    
T  4267652 agcccgtaaagggccgggctcgggctctatttttccagcccatattcaaaccgggctttttagcccgacccttaaaagccc 4267732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 19106617 - 19106671
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaa 55  Q
    ||||||||||||||||||  ||||||||||||| | ||||||||||| |||||||    
T  19106617 cccgggagcccgtataggaccgggctcgggctcaattattccagcccatatttaa 19106671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 49113357 - 49113415
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccg 59  Q
    |||||||||||||| |||| ||||||||||||||| | ||||||||| |||| ||||||    
T  49113357 cccgggagcccgtaaagggccgggctcgggctctatttttccagcccatattcaaaccg 49113415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 142
Target Start/End: Complemental strand, 18833780 - 18833681
Alignment:
Q  43 agcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgggccggcccgaaacggaccgggtagcccgttttgacagctcta 142  Q
    ||||||| ||||||||| ||||||| | ||||  | | ||||||||  ||||||| |||||||||| | |||| || ||  |||||||||||||||||||    
T  18833780 agcccgtttttaaaccgggctttttggcccggcacgataaagcccgaagcccgttagggccggccctacacgggccaggccgcccgttttgacagctcta 18833681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 8781547 - 8781597
Alignment:
Q  61 gctttttagtccggtcctaaaaagcccgctgcccgtttgggccggcccgaa 111  Q
    ||||||||| |||||||||||||||||||| |||||| ||||  |||||||    
T  8781547 gctttttagcccggtcctaaaaagcccgctacccgttagggctagcccgaa 8781597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 17471424 - 17471338
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagccc 87  Q
    |||||||| ||||| |||| ||||||||||||||| | ||||| ||  |||| ||||||  |||||||| |||| ||| ||||||||    
T  17471424 cccgggagtccgtaaagggccgggctcgggctctatttttccaacctatattcaaaccggactttttagcccggcccttaaaagccc 17471338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 17581790 - 17581876
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagccc 87  Q
    |||||||| ||||| |||| ||||||||||||||| | ||||| ||  |||| ||||||  |||||||| |||| ||| ||||||||    
T  17581790 cccgggagtccgtaaagggccgggctcgggctctatttttccaacctatattcaaaccggactttttagcccggcccttaaaagccc 17581876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 40921302 - 40921241
Alignment:
Q  81 aaagcccgctgcccgtttgggccggcccgaaacggaccgggtagcccgttttgacagctcta 142  Q
    ||||||||  ||||||| |||||||||| ||||||  ||||  |||||||||||||||||||    
T  40921302 aaagcccgaagcccgttagggccggccctaaacgggtcgggccgcccgttttgacagctcta 40921241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 5e-44; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 19976430 - 19976572
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtcc-ggtcctaaaaagcccgctgcccgtttg 99  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||| | ||||||||| || || || |||||||||||| |||||| |    
T  19976430 cccgggagcccgtatagggccgggctcgggctctaatattccagcacatatttaaactgggctttttagccccggcccgaaaaagcccgcttcccgttcg 19976529  T
Q  100 ggccggcccgaaacggaccgggtagcccgttttgacagctcta 142  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  19976530 ggccgacccgaaacggaccgggtagcccgttttgacagctcta 19976572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 10 - 143
Target Start/End: Original strand, 11486222 - 11486355
Alignment:
Q  10 ccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgggccggcccg 109  Q
    |||||||||| |||||||||||||||  |||||||||||||||||||||| ||||||||| ||||||||||||| |||||  |||||| |||| ||| ||    
T  11486222 ccgtatagggccgggctcgggctctatcattccagcccgtatttaaaccgggctttttagcccggtcctaaaaaacccgcaacccgttcgggctggctcg 11486321  T
Q  110 aaacggaccgggtagcccgttttgacagctctac 143  Q
    |||||| |||||||||||||||||||||||||||    
T  11486322 aaacgggccgggtagcccgttttgacagctctac 11486355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 6884387 - 6884246
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgg 100  Q
    ||||||||||||||||||| |||||||||||||   | || |||||| |||| |||||| ||||||||| |||| ||| ||||||||   |||||   ||    
T  6884387 cccgggagcccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagcccttggcccggccgg 6884288  T
Q  101 gccggcccgaaacggaccgggtagcccgttttgacagctcta 142  Q
    ||||| || |||||| |||||  |||||||||||||||||||    
T  6884287 gccgggcctaaacgggccgggccgcccgttttgacagctcta 6884246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 43745973 - 43745832
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgg 100  Q
    ||||||||||||||||||| |||||||||||||   | || |||||| |||| |||||| ||||||||| |||| ||| ||||||||   |||||   ||    
T  43745973 cccgggagcccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagcccttggcccggccgg 43745874  T
Q  101 gccggcccgaaacggaccgggtagcccgttttgacagctcta 142  Q
    ||||| || |||||| |||||  |||||||||||||||||||    
T  43745873 gccgggcctaaacgggccgggccgcccgttttgacagctcta 43745832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 50737249 - 50737162
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccg 88  Q
    |||||||||||||| |||| ||||||||||||||| | ||||||||| |||| |||||| ||||||||| |||| ||| |||||||||    
T  50737249 cccgggagcccgtaaagggccgggctcgggctctatttttccagcccatattcaaaccgggctttttagcccggcccttaaaagcccg 50737162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 50775606 - 50775693
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccg 88  Q
    |||||||||||||| |||| ||||||||||||||| | ||||||||| |||| |||||| ||||||||| |||| ||| |||||||||    
T  50775606 cccgggagcccgtaaagggccgggctcgggctctatttttccagcccatattcaaaccgggctttttagcccggcccttaaaagcccg 50775693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 33986132 - 33986217
Alignment:
Q  2 ccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagccc 87  Q
    |||||||||||||||||| ||||||||||||||| | || |||||| |||| |||||| ||||||||| |||| ||| ||||||||    
T  33986132 ccgggagcccgtatagggccgggctcgggctctatttttgcagcccatattaaaaccgggctttttagcccggcccttaaaagccc 33986217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 20511261 - 20511406
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgg 100  Q
    ||||||||||||||||||  | ||||| ||||| | ||||||||||| ||||||||  | | ||||||  ||| ||||||||| |||| | ||||||  |    
T  20511261 cccgggagcccgtatagg--ccggctcaggctcaattattccagcccttatttaaatagggttttttaacccgatcctaaaaaacccgttacccgttcag 20511358  T
Q  101 gccggcccgaaacggaccgggtagcccgttttgacagctctacttatt 148  Q
     ||| ||||||| || |||| |||||||||||||||||||||| ||||    
T  20511359 cccgacccgaaatgggccggatagcccgttttgacagctctacatatt 20511406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 46312165 - 46312252
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccg 88  Q
    ||||||||||||||||||| |||||||||||||   | || |||||| |||| |||||| |||||||||||||| ||| |||||||||    
T  46312165 cccgggagcccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagtccggcccttaaaagcccg 46312252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 27877831 - 27877972
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgg 100  Q
    ||||||||||||||||||| |||||||||||||   | || |||||| |||| |||||| ||||||||| |||  ||| ||||||||   |||||   ||    
T  27877831 cccgggagcccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccgacccttaaaagcccttggcccggccgg 27877930  T
Q  101 gccggcccgaaacggaccgggtagcccgttttgacagctcta 142  Q
    ||||| || ||||||  ||||  |||||||||||||||||||    
T  27877931 gccgggcctaaacgggtcgggccgcccgttttgacagctcta 27877972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 24311737 - 24311792
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaa 56  Q
    ||||| |||||||||||||||||||||| |||||| |||| |||||||||||||||    
T  24311737 cccggaagcccgtatagggtcgggctcgagctctattatttcagcccgtatttaaa 24311792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 46219404 - 46219490
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagccc 87  Q
    ||||||||||||||||||| |||||||||||||   | || |||||| |||| |||||| ||||||||| |||| ||| ||||||||    
T  46219404 cccgggagcccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagccc 46219490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 43736584 - 43736657
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccgg 74  Q
    |||||||||||||| |||| ||||||||||||||| | ||||||||| |||| |||| | ||||||||| ||||    
T  43736584 cccgggagcccgtaaagggccgggctcgggctctacttttccagcccatattcaaactgggctttttagcccgg 43736657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 142
Target Start/End: Original strand, 49507906 - 49508005
Alignment:
Q  43 agcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgggccggcccgaaacggaccgggtagcccgttttgacagctcta 142  Q
    ||||||| ||| ||||| ||||||| | |||| || | ||||||||  ||||||| |||||||||| | |||| |||||  |||||||||||||||||||    
T  49507906 agcccgtttttcaaccgggctttttggcccggcccgataaagcccgaagcccgttagggccggccctagacgggccgggccgcccgttttgacagctcta 49508005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 21075686 - 21075613
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccgg 74  Q
    ||||||||||||||||||| |||||||||||||   | || |||||| |||| |||||| ||||||||| ||||    
T  21075686 cccgggagcccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccgg 21075613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 21390525 - 21390561
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaat 37  Q
    ||||||||||||||||||| |||||||||||||||||    
T  21390525 cccgggagcccgtatagggccgggctcgggctctaat 21390561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 142
Target Start/End: Complemental strand, 51884862 - 51884763
Alignment:
Q  43 agcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgggccggcccgaaacggaccgggtagcccgttttgacagctcta 142  Q
    ||||||| ||| ||||| ||||||| | |||| |  | ||||||||  |||| || |||||||||| ||||||| ||||  |||||||||||||||||||    
T  51884862 agcccgtttttcaaccgggctttttggcccggccagataaagcccgaagcccattagggccggccctaaacggatcgggccgcccgttttgacagctcta 51884763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 24570325 - 24570373
Alignment:
Q  63 tttttagtccggtcctaaaaagcccgctgcccgtttgggccggcccgaa 111  Q
    |||||||||||||||||||||| ||||| |||||| ||||  |||||||    
T  24570325 tttttagtccggtcctaaaaagtccgctacccgttagggctagcccgaa 24570373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 37205367 - 37205226
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgg 100  Q
    ||||||||||||||||||| | ||||||||||||| |||| |||||||||||||||||| ||||||||| |||| |||||||||||||  ||||||  ||    
T  37205367 cccgggagcccgtatagggccaggctcgggctctattatttcagcccgtatttaaaccgggctttttagcccggccctaaaaagcccgaagcccgtccgg 37205268  T
Q  101 gccggcccgaaacggaccgggtagcccgttttgacagctcta 142  Q
    ||| |||||||||||  ||||||||||| |||||||||||||    
T  37205267 gccagcccgaaacgggtcgggtagcccgctttgacagctcta 37205226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 15 - 142
Target Start/End: Original strand, 36867270 - 36867398
Alignment:
Q  15 tagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgggccggccc-gaaac 113  Q
    ||||| ||||||||||||| | ||||||| |||||||||||| || |||||| ||||||  ||||||||||||| ||||| || ||||||||||  ||||    
T  36867270 tagggccgggctcgggctcaattattccaacccgtatttaaatcgggcttttcagtccgaccctaaaaagcccgttgcccattcgggccggcccaaaaac 36867369  T
Q  114 ggaccgggtagcccgttttgacagctcta 142  Q
    || | |||||||| |||||||||||||||    
T  36867370 gggctgggtagcctgttttgacagctcta 36867398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 6238600 - 6238741
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgg 100  Q
    ||||||||||||||||||| |||||||||||||   | || |||||| |||| |||||| ||||||||| |||| ||| ||||||||   |||||   ||    
T  6238600 cccgggagcccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagcccttggcccggccgg 6238699  T
Q  101 gccggcccgaaacggaccgggtagcccgttttgacagctcta 142  Q
    ||||| || |||||| |||||  |||||||||||||||||||    
T  6238700 gccgggcctaaacgggccgggccgcccgttttgacagctcta 6238741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 36016557 - 36016698
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgg 100  Q
    ||||||||||||||||||| |||||||||||||   | || |||||| |||| |||||| ||||||||| |||| ||| ||||||||   |||||   ||    
T  36016557 cccgggagcccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagcccttggcccggccgg 36016656  T
Q  101 gccggcccgaaacggaccgggtagcccgttttgacagctcta 142  Q
    ||||| || |||||| |||||  |||||||||||||||||||    
T  36016657 gccgggcctaaacgggccgggccgcccgttttgacagctcta 36016698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 4970325 - 4970221
Alignment:
Q  7 agcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgggccggc 106  Q
    ||||||||| ||| ||||||||||||||||| ||||||| | ||||||||| | ||||||||  |||| ||| ||||||||| ||||||||||| ||||     
T  4970325 agcccgtattgggccgggctcgggctctaattttccagctcatatttaaactgggctttttaacccggccctcaaaagcccgttgcccgtttggaccggg 4970226  T
Q  107 ccgaa 111  Q
    |||||    
T  4970225 ccgaa 4970221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 33907637 - 33907553
Alignment:
Q  3 cgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagccc 87  Q
    |||||||||||| |||||||||||||||||||| | ||||||||| |||||||| || ||||||||| |||| ||| ||||||||    
T  33907637 cgggagcccgtaaagggtcgggctcgggctctatttttccagcccatatttaaatcgggctttttagcccggcccttaaaagccc 33907553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 4 - 142
Target Start/End: Original strand, 75638 - 75775
Alignment:
Q  4 gggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgggcc 103  Q
    |||||||||||||||| ||||||||||||| | ||||||||||| ||||||||  | ||||||||  |||| ||||||||| | | | |||||| || ||    
T  75638 gggagcccgtatagggccgggctcgggctcaattattccagcccttatttaaatagggctttttaacccggccctaaaaagtctgttacccgttcggccc 75737  T
Q  104 ggcccgaaacggaccgggtagcccgttttgacagctcta 142  Q
     | | ||||||||| ||||||||||||| |||| |||||    
T  75738 ag-cggaaacggactgggtagcccgtttggacaactcta 75775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 6900310 - 6900451
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgg 100  Q
    ||||||||||||||||||| |||||||||||||   | || |||||| |||| |||||| ||||||||| |||| ||| ||||||||   |||||   ||    
T  6900310 cccgggagcccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagcccttggcccggccgg 6900409  T
Q  101 gccggcccgaaacggaccgggtagcccgttttgacagctcta 142  Q
    ||||  || |||||| |||||  |||||||||||||||||||    
T  6900410 gccgagcctaaacgggccgggccgcccgttttgacagctcta 6900451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 31230829 - 31230933
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgg 100  Q
    ||||||||||||||||||| ||||||||||| ||| | ||||||||| ||||||||||| | ||||||| ||||  |||||||| | | |||||| | ||    
T  31230829 cccgggagcccgtatagggccgggctcgggccctatttttccagcccatatttaaaccgggttttttagcccggctctaaaaagtctgttgcccgatcgg 31230928  T
Q  101 gccgg 105  Q
    |||||    
T  31230929 gccgg 31230933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 4 - 145
Target Start/End: Original strand, 42093184 - 42093325
Alignment:
Q  4 gggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgggcc 103  Q
    |||||||||||||||| |||||  |||||||| |||| ||| | |||||||||||| |||||| |  ||||  ||||||||||  |  | || |  ||||    
T  42093184 gggagcccgtatagggccgggcctgggctctattatttcagtctgtatttaaaccgcgcttttcaacccggctctaaaaagcctacaactcgatcaggcc 42093283  T
Q  104 ggcccgaaacggaccgggtagcccgttttgacagctctactt 145  Q
    || |||||| ||||||| ||| ||||||||||||||||||||    
T  42093284 ggtccgaaatggaccggatagtccgttttgacagctctactt 42093325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 4695613 - 4695471
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattc-cagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttg 99  Q
    ||||||||||||||||||| ||||||||||| ||  | ||  |||||| |||| |||||| ||||||||| |||| ||| ||||||||   |||||   |    
T  4695613 cccgggagcccgtatagggccgggctcgggc-ctgtttttagcagcccatattcaaaccgggctttttagcccggcccttaaaagcccttggcccggccg 4695515  T
Q  100 ggccggcccgaaacggaccgggtagcccgttttgacagctctac 143  Q
    |||||| || |||||| |||||  ||||||||||||||||||||    
T  4695514 ggccgggcctaaacgggccgggccgcccgttttgacagctctac 4695471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 9996548 - 9996685
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgg 100  Q
    ||||||||||||||||||| |||||||||||||   | || |||||| |||| |||||| ||||||||| || | ||| ||||||||   ||||     |    
T  9996548 cccgggagcccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccagcccttaaaagcccttggccc-----g 9996642  T
Q  101 gccggcccgaaacggaccgggtagcccgttttgacagctctac 143  Q
    ||||| || |||||| |||||  ||||||||||||||||||||    
T  9996643 gccgggcctaaacgggccgggccgcccgttttgacagctctac 9996685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 21732022 - 21732108
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagccc 87  Q
    ||||||||||||||||||| |||||||||||||   | || |||||| |||| |||||| ||||||||| |||| ||| ||||||||    
T  21732022 cccgggagcccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagccc 21732108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 142
Target Start/End: Complemental strand, 38355822 - 38355684
Alignment:
Q  4 gggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgggcc 103  Q
    |||||||||||||||| |||||||||||||   | || |||||| |||| |||||| ||||||||| |||  ||| ||||||||   |||||   |||||    
T  38355822 gggagcccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccgacccttaaaagcccttggcccggccgggcc 38355723  T
Q  104 ggcccgaaacggaccgggtagcccgttttgacagctcta 142  Q
    || || ||||||  ||||  |||||||||||||||||||    
T  38355722 gggcctaaacgggtcgggccgcccgttttgacagctcta 38355684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 35038546 - 35038473
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccgg 74  Q
    |||||||||||||||||||||||||||||||||   | || |||||| |||| ||||||| |||||||| ||||    
T  35038546 cccgggagcccgtatagggtcgggctcgggctcattttttgcagcccatattcaaaccgaactttttagcccgg 35038473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 1845710 - 1845796
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctc-taatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagccc 87  Q
    ||||||||||||||||||| ||||||||||||| | || || |||||| |||| |||||| ||||||||| |||| ||| ||||||||    
T  1845710 cccgggagcccgtatagggccgggctcgggctcattat-ttgcagcccatattcaaaccgggctttttagcccggcccttaaaagccc 1845796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 143
Target Start/End: Original strand, 24477703 - 24477825
Alignment:
Q  21 cgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgggccggcccgaaacggaccgg 120  Q
    |||||||||||||   | || |||||| |||| |||||| ||||||||| |||| ||| ||||||||   |||||   ||||||| || |||||| ||||    
T  24477703 cgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagcccttggcccggccgggccgggcctaaacgggccgg 24477802  T
Q  121 gtagcccgttttgacagctctac 143  Q
    |  ||||||||||||||||||||    
T  24477803 gccgcccgttttgacagctctac 24477825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 42860110 - 42860024
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagccc 87  Q
    ||||||||||||||||||| ||| |||||||||   | || |||||| |||| |||||| ||||||||| |||| ||| ||||||||    
T  42860110 cccgggagcccgtatagggccggactcgggctcattttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagccc 42860024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 3296878 - 3296962
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctcta-atattccagcccgtatttaaaccgagctttttagtccggtcctaaaaag 84  Q
    ||||||||||||||||||||||| |||||||||||  | ||| | ||||||||| | ||| | |||||||||||| |||| ||||    
T  3296878 cccgggagcccgtatagggtcggactcgggctctattttttcaaacccgtatttcacccgggttttttagtccggccctataaag 3296962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 6955587 - 6955502
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagccc 87  Q
    ||||||||||| ||||||| |||||||||||||   | || |||||| |||| |||||| ||||||||| |||| ||| ||||||||    
T  6955587 cccgggagccc-tatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagccc 6955502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 21162722 - 21162672
Alignment:
Q  61 gctttttagtccggtcctaaaaagcccgctgcccgtttgggccggcccgaa 111  Q
    ||||||||| |||| ||||||||||||||| |||||| ||||| |||||||    
T  21162722 gctttttagcccggacctaaaaagcccgctacccgttagggccagcccgaa 21162672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 17016542 - 17016583
Alignment:
Q  61 gctttttagtccggtcctaaaaagcccgctgcccgtttgggc 102  Q
    ||||||||| |||| ||||||||||||||| |||||||||||    
T  17016542 gctttttagcccggccctaaaaagcccgctacccgtttgggc 17016583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 38837424 - 38837279
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgg 100  Q
    ||||||||||||||||||| ||||||||||||||| |||| ||||| |||||||||||| ||||||||| |||| ||||||||| | |  ||||||   |    
T  38837424 cccgggagcccgtatagggccgggctcgggctctattatttcagcctgtatttaaaccgggctttttagcccggccctaaaaagtctgaagcccgtccag 38837325  T
Q  101 gccggcccgaaacggaccgggtagcccgttttgacagctctactta 146  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||    
T  38837324 gccggcccgaaacgggccgggtagcccattttgacagctctactta 38837279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 6 - 143
Target Start/End: Original strand, 38571387 - 38571524
Alignment:
Q  6 gagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgggccgg 105  Q
    |||||||||||||| |||||||| |||||| |||| ||||||||||||||| || ||||||||| || | ||||||||  ||||  |||||| |||||||    
T  38571387 gagcccgtatagggccgggctcgagctctattattacagcccgtatttaaatcgggctttttagcccagccctaaaaaatccgcaacccgttcgggccgg 38571486  T
Q  106 cccgaaacggaccgggtagcccgttttgacagctctac 143  Q
    |||||||||| |||||||||||||||||  ||||||||    
T  38571487 cccgaaacgggccgggtagcccgttttgtaagctctac 38571524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 21104305 - 21104449
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgg 100  Q
    ||||||||||||||||||| |||||||||||||   | || |||||| |||| |||||| ||||||||| |||| ||| ||||||||   |||||   ||    
T  21104305 cccgggagcccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagcccttggcccggccgg 21104404  T
Q  101 gccggcccgaaacggaccgggtagcccgttttgacagctctactt 145  Q
    ||||| || |||||| |||||  ||||||||||||||||||||||    
T  21104405 gccgggcctaaacgggccgggccgcccgttttgacagctctactt 21104449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 15613446 - 15613306
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgg 100  Q
    ||||||||||||||||||| ||||||||||||||| | ||   |||| ||||||||||| | |||| || |||| ||| ||||||||| |||||||| ||    
T  15613446 cccgggagcccgtatagggccgggctcgggctctattttttaggcccatatttaaaccgggatttt-agcccggccctcaaaagcccgttgcccgttcgg 15613348  T
Q  101 gccggcccgaaacggaccgggtagcccgttttgacagctcta 142  Q
    ||||  || ||||||  ||||  |||||||||||||||||||    
T  15613347 gccgagcctaaacgggtcgggccgcccgttttgacagctcta 15613306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 26555939 - 26555852
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccg 88  Q
    |||||||||| |||||||| ||||||||||||| | |||| |||||| ||||||||| | ||||||||| |||| |||||||||||||    
T  26555939 cccgggagcctgtatagggccgggctcgggctccattatttcagcccatatttaaacagggctttttagcccggccctaaaaagcccg 26555852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 4470006 - 4469922
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagc 85  Q
    ||||||||||||||||||| ||||||||||||| | |||| ||| || |||| |||| || |||||||| |||| ||||||||||    
T  4470006 cccgggagcccgtatagggccgggctcgggctccattatttcagtccatattcaaacagatctttttagcccgggcctaaaaagc 4469922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 142
Target Start/End: Complemental strand, 25458896 - 25458761
Alignment:
Q  7 agcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgggccggc 106  Q
    |||||||||||||| ||| | |||||||| ||||| ||||||||||||||  |  |||||||| ||| ||||||||| |||||  | || | |  |||||    
T  25458896 agcccgtatagggttgggtttgggctctattattctagcccgtatttaaataggactttttagcccgatcctaaaaaacccgcaactcgctcgacccggc 25458797  T
Q  107 ccgaaacggaccgggtagcccgttttgacagctcta 142  Q
     ||||| ||||||| |||||| |||||||| |||||    
T  25458796 tcgaaatggaccggatagcccattttgacaactcta 25458761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 9471645 - 9471731
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagccc 87  Q
    |||||||||||||| |||| ||||||||||||||| | || |||||| |||| |||| | ||||||||| |||| ||| ||||||||    
T  9471645 cccgggagcccgtaaagggccgggctcgggctctattttttcagcccatattcaaactgggctttttagcccgggccttaaaagccc 9471731  T

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Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 40000593 - 40000507
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagccc 87  Q
    ||||||||||||||||||| |||||||||||||   | || |||||| |||| |||||| ||||||||| |||| ||| ||||||||    
T  40000593 cccgggagcccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagccc 40000507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 40860838 - 40860752
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagccc 87  Q
    ||||||||||||||||||| |||||||||||||   | || |||||| |||| |||||| ||||||||| |||| ||| ||||||||    
T  40860838 cccgggagcccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagccc 40860752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 142
Target Start/End: Complemental strand, 15560380 - 15560245
Alignment:
Q  7 agcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgggccggc 106  Q
    ||||||||||||| |||||||||||||   | || |||||| |||| |||||| ||||||||  |||| ||| |||| |||   |||||   |||||||     
T  15560380 agcccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttaacccggcccttaaaatcccttggcccggccgggccgga 15560281  T
Q  107 ccgaaacggaccgggtagcccgttttgacagctcta 142  Q
    || |||||| |||||  |||||||||||||||||||    
T  15560280 cctaaacgggccgggccgcccgttttgacagctcta 15560245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 25096584 - 25096670
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctc-taatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagccc 87  Q
    ||||||||||||||||||| ||||||||||||| | || || |||||| |||| |||||| ||||||||| |||| ||| ||||||||    
T  25096584 cccgggagcccgtatagggccgggctcgggctcattat-ttgcagcccatattcaaaccgggctttttagcccggcccttaaaagccc 25096670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 55 - 142
Target Start/End: Original strand, 30556195 - 30556282
Alignment:
Q  55 aaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgggccggcccgaaacggaccgggtagcccgttttgacagctcta 142  Q
    ||||| ||||||| | ||||||| | ||||||||  ||||||| |||||||||| |||||| |||||  ||||||||||||| |||||    
T  30556195 aaccgggctttttggcccggtccgataaagcccgaagcccgttagggccggccctaaacgggccgggccgcccgttttgacaactcta 30556282  T

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Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 10710414 - 10710468
Alignment:
Q  91 gcccgtttgggccggcccgaaacggaccgggtagcccgttttgacagctctactt 145  Q
    ||||||| |||||||||| |||||| |||||  ||||||||||||||||||||||    
T  10710414 gcccgttagggccggccctaaacgggccgggccgcccgttttgacagctctactt 10710468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 20922028 - 20921962
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagcttttt 67  Q
    |||||||| |||||||||| ||  ||||||||| | ||||||||||| ||||||||||| |||||||    
T  20922028 cccgggagtccgtatagggccgcactcgggctcaattattccagcccatatttaaaccgggcttttt 20921962  T

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Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 29205793 - 29205707
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagccc 87  Q
    ||||||||| ||||||||| |||||||||||||   | || |||||| |||| |||||| ||||||||| |||| ||| ||||||||    
T  29205793 cccgggagctcgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagccc 29205707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 17921502 - 17921583
Alignment:
Q  5 ggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagccc 87  Q
    |||||||| | |||| |||||||||||||| || ||||||||| |||| |||||  ||||||||| |||| ||| ||||||||    
T  17921502 ggagcccgcaaagggccgggctcgggctct-attttccagcccatattcaaaccaggctttttagcccggcccttaaaagccc 17921583  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 23334109 - 23334157
Alignment:
Q  63 tttttagtccggtcctaaaaagcccgctgcccgtttgggccggcccgaa 111  Q
    |||||||||||| ||||||||||||||| |||||| ||||  |||||||    
T  23334109 tttttagtccggccctaaaaagcccgctacccgttagggctagcccgaa 23334157  T

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Target: chr8 (Bit Score: 74; Significance: 6e-34; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 6143525 - 6143666
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgg 100  Q
    |||||||||| |||||||| ||||||||||||||| |||| || |||||||||||| || |||||| || |||  |||||||||||||| ||||||| ||    
T  6143525 cccgggagcctgtatagggccgggctcgggctctattatttcatcccgtatttaaatcgggcttttcagcccgaccctaaaaagcccgcagcccgttcgg 6143624  T
Q  101 gccggcccgaaacggaccgggtagcccgttttgacagctcta 142  Q
    |||||||||||| || ||  ||||||||||||||||||||||    
T  6143625 gccggcccgaaaagggccccgtagcccgttttgacagctcta 6143666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 7 - 142
Target Start/End: Original strand, 9201726 - 9201866
Alignment:
Q  7 agcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgggccggc 106  Q
    ||||||||||||| || |||||||||||| |||| ||||||||||||||||||  ||||| ||||||| |||||||||| ||  ||||||| ||||| ||    
T  9201726 agcccgtatagggccgagctcgggctctattatttcagcccgtatttaaaccggacttttcagtccggccctaaaaagctcgtagcccgttcgggccagc 9201825  T
Q  107 ccgaaacggaccggg-----tagcccgttttgacagctcta 142  Q
    |||||||| | ||||     |||||||||||||||||||||    
T  9201826 ccgaaacgaaacgggccgagtagcccgttttgacagctcta 9201866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 2350420 - 2350561
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgg 100  Q
    |||||||||| |||||||| ||||||||||||| | |||||| |||| |||||||| || |||||| || ||||||| |||||||||| | ||||   ||    
T  2350420 cccgggagcctgtatagggccgggctcgggctcaattattcccgcccatatttaaatcgggcttttcagcccggtccgaaaaagcccgttacccggccgg 2350519  T
Q  101 gccggcccgaaacggaccgggtagcccgttttgacagctcta 142  Q
    ||||| || |||||| |||||  |||||||||||||||||||    
T  2350520 gccgggcctaaacgggccgggccgcccgttttgacagctcta 2350561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 30436156 - 30436014
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctc-taatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttg 99  Q
    ||||||||||||||||||| ||||||||||||| |  | || |||||| |||| |||||| ||||||||| |||| ||| ||||||||   |||||   |    
T  30436156 cccgggagcccgtatagggccgggctcgggctcatttttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagcccttggcccggccg 30436057  T
Q  100 ggccggcccgaaacggaccgggtagcccgttttgacagctcta 142  Q
    |||||| || |||||| |||||  |||||||||||||||||||    
T  30436056 ggccgggcctaaacgggccgggccgcccgttttgacagctcta 30436014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 35813123 - 35812982
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgg 100  Q
    ||||||||||||||||||| |||||||||||||   | || |||||| |||| |||| | ||||||||| |||| ||| ||||||||   |||||   ||    
T  35813123 cccgggagcccgtatagggccgggctcgggctcattttttgcagcccatattcaaactgggctttttagcccggcccttaaaagcccttggcccggccgg 35813024  T
Q  101 gccggcccgaaacggaccgggtagcccgttttgacagctcta 142  Q
    ||||| || |||||| |||||  |||||||||||||||||||    
T  35813023 gccgggcctaaacgggccgggccgcccgttttgacagctcta 35812982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 43 - 144
Target Start/End: Original strand, 32018884 - 32018985
Alignment:
Q  43 agcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgggccggcccgaaacggaccgggtagcccgttttgacagctcta 142  Q
    ||||||| ||| ||||| ||||||| | ||||||| | |||||| |  ||||||| |||||||||| |||||| |||||  |||||||||||||||||||    
T  32018884 agcccgtttttcaaccgggctttttggcccggtccgataaagcctgaagcccgttagggccggccctaaacgggccgggccgcccgttttgacagctcta 32018983  T
Q  143 ct 144  Q
    ||    
T  32018984 ct 32018985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 45450979 - 45450896
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaag 84  Q
    ||||| ||||||||||||| | ||||||||||| | ||||||||||| |||| |||| | ||||||||| |||| |||||||||    
T  45450979 cccggaagcccgtatagggccaggctcgggctccattattccagcccatattcaaacagggctttttagcccggccctaaaaag 45450896  T

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Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 15244615 - 15244697
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaa 83  Q
    ||||| ||||||||||||| ||| ||||||||||| | ||  ||||| ||||||||||| ||||||||| |||| ||||||||    
T  15244615 cccggaagcccgtatagggccggactcgggctctatttttttagcccatatttaaaccgggctttttagcccggccctaaaaa 15244697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 23221871 - 23221730
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgg 100  Q
    |||||||||||||||||||  ||||||||||||   | || |||||| |||| |||||| ||||||||| |||| ||| ||||||||   ||||    ||    
T  23221871 cccgggagcccgtatagggcggggctcgggctcattttttgcagcccatattgaaaccgggctttttagcccggcccttaaaagcccttggccccgccgg 23221772  T
Q  101 gccggcccgaaacggaccgggtagcccgttttgacagctcta 142  Q
    ||||| || |||||| |||||  |||||| ||||||||||||    
T  23221771 gccgggcctaaacgggccgggctgcccgtattgacagctcta 23221730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 3940969 - 3941055
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagccc 87  Q
    ||||||||||||||||||| |||||||||||||   | || |||||| |||| |||| | ||||||||| |||| ||| ||||||||    
T  3940969 cccgggagcccgtatagggccgggctcgggctcattttttgcagcccatattcaaactgggctttttagcccggcccttaaaagccc 3941055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 3654115 - 3653974
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgg 100  Q
    |||||||||| |||||||| |||| ||||||||   | || |||||| |||| |||||| ||||||||| |||| ||| |||| |||   |||||   ||    
T  3654115 cccgggagcctgtatagggccgggatcgggctcattttttgcagcccatattcaaaccgggctttttagcccggcccttaaaatcccttggcccggccgg 3654016  T
Q  101 gccggcccgaaacggaccgggtagcccgttttgacagctcta 142  Q
    ||| | || |||||| |||||  |||||||||||||||||||    
T  3654015 gccaggcctaaacgggccgggccgcccgttttgacagctcta 3653974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 38895283 - 38895335
Alignment:
Q  92 cccgtttgggccggcccgaaacggaccgggtagcccgttttgacagctctact 144  Q
    |||||| |||||||||| |||||| |||||  |||||||||||||||||||||    
T  38895283 cccgttagggccggccctaaacgggccgggccgcccgttttgacagctctact 38895335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 957524 - 957574
Alignment:
Q  61 gctttttagtccggtcctaaaaagcccgctgcccgtttgggccggcccgaa 111  Q
    ||||||||| |||| ||||||||||||||| |||||| ||||| |||||||    
T  957524 gctttttagcccggccctaaaaagcccgctacccgttagggccagcccgaa 957574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 135
Target Start/End: Complemental strand, 29893867 - 29893747
Alignment:
Q  9 cccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgggccggccc 108  Q
    ||||||||||| ||||||||||||||| |||| || || |||||||||||  | ||||||  |||  |||||||| || || | |||||     ||||||    
T  29893867 cccgtatagggccgggctcgggctctattattacaacctgtatttaaaccaggatttttaacccgaccctaaaaatcctgcagtccgtt-----cggccc 29893773  T
Q  109 gaaacggaccgggtagcccgttttgac 135  Q
    ||||||| ||||||||||| |||||||    
T  29893772 gaaacgg-ccgggtagcccattttgac 29893747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 28968959 - 28969015
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaac 57  Q
    ||||| |||||||| |||| ||||||||||||||| | ||||||||| |||| ||||    
T  28968959 cccggaagcccgtacagggccgggctcgggctctatttttccagcccatattcaaac 28969015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 43263261 - 43263174
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccg 88  Q
    ||||||||||||||||||| |||||||| |||||| |||| |||||||||||||||||| |||||||||||||| |||||||||||||    
T  43263261 cccgggagcccgtatagggccgggctcgagctctattatttcagcccgtatttaaaccgggctttttagtccggccctaaaaagcccg 43263174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 4221868 - 4221952
Alignment:
Q  3 cgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagccc 87  Q
    ||||||||||||||||| ||||||||||||||| | ||||||||| ||||||||||| ||||||||| |||| ||||||||||||    
T  4221868 cgggagcccgtatagggccgggctcgggctctatttttccagcccatatttaaaccgggctttttagcccggccctaaaaagccc 4221952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 46158373 - 46158477
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgg 100  Q
    ||||||||||||||||||| ||||||||||||||| | |||  |||| ||||||||||| ||||||||| |||| ||| ||||||||| ||| |||| ||    
T  46158373 cccgggagcccgtatagggccgggctcgggctctatttttcaggcccatatttaaaccgggctttttagcccggccctcaaaagcccgttgctcgttcgg 46158472  T
Q  101 gccgg 105  Q
    |||||    
T  46158473 gccgg 46158477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 33189326 - 33189467
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgg 100  Q
    ||||||||||||||||||| |||||||||||||   | || |||||| ||||||||||  ||||||||| |||| ||| ||||||||   |||||   ||    
T  33189326 cccgggagcccgtatagggccgggctcgggctcattttttgcagcccatatttaaacctggctttttagcccggcccttaaaagcccttggcccggccgg 33189425  T
Q  101 gccggcccgaaacggaccgggtagcccgttttgacagctcta 142  Q
    ||||| || |||||| | |||  |||||||||||||||||||    
T  33189426 gccgggcctaaacgggctgggccgcccgttttgacagctcta 33189467  T

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Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 45040110 - 45040251
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgg 100  Q
    |||||||||||||||| || ||| |||||||||||  ||||||||| |||||||||  | | |||||||||||  ||| ||||| ||||  |||| | ||    
T  45040110 cccgggagcccgtataaggccggactcgggctctatgattccagcctgtatttaaatagggttttttagtccgaccctgaaaagtccgcaacccgctcgg 45040209  T
Q  101 gccggcccgaaacggaccgggtagcccgttttgacagctcta 142  Q
     ||| ||||||| || |||| |||||| ||||||||||||||    
T  45040210 cccgacccgaaatgggccggatagcccattttgacagctcta 45040251  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 142
Target Start/End: Original strand, 700471 - 700604
Alignment:
Q  8 gcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgggccggcc 107  Q
    |||||||||||||||||||||||   ||   ||| ||||||| ||| |||||  |||||| | |||| || | ||||||||  ||| ||| |||||||||    
T  700471 gcccgtatagggtcgggctcgggtagtatatttcaagcccgt-tttcaaccggactttttggcccggcccgataaagcccggagcctgttagggccggcc 700569  T
Q  108 cgaaacggaccgggtagcccgttttgacagctcta 142  Q
    | |||||| |||||| |||||||||||||||||||    
T  700570 ctaaacgggccgggtcgcccgttttgacagctcta 700604  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 45757040 - 45756955
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagccc 87  Q
    ||||||||||||||||||| ||||||||||||| | | || |||||| |||| |||||| ||||||||| |||| ||| ||||||||    
T  45757040 cccgggagcccgtatagggccgggctcgggctc-atttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagccc 45756955  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 142
Target Start/End: Original strand, 30534153 - 30534285
Alignment:
Q  2 ccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttggg 101  Q
    ||||||||||||||| || | ||||| || |||| |||| ||||||||| |||||||| |||         |||||||||||||||||  || ||| | |    
T  30534153 ccgggagcccgtataaggccaggctcaggttctattatttcagcccgtagttaaaccgggcta--------ggtcctaaaaagcccgcaaccggttcgag 30534244  T
Q  102 ccggcccgaaacggaccgggtagcccgttttgacagctcta 142  Q
    |||||| |||| || |||||||||||||||||||| |||||    
T  30534245 ccggcctgaaatgggccgggtagcccgttttgacaactcta 30534285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 9660624 - 9660487
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgg 100  Q
    ||||||||||||||||||| |||||||||||||   | || |||||| |||| |||||| ||||||||| ||   ||| ||||||||   ||||     |    
T  9660624 cccgggagcccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccaacccttaaaagcccttggccc-----g 9660530  T
Q  101 gccggcccgaaacggaccgggtagcccgttttgacagctctac 143  Q
    ||||| || |||||| |||||  ||||||||||||||||||||    
T  9660529 gccgggcctaaacgggccgggccgcccgttttgacagctctac 9660487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 17332100 - 17332181
Alignment:
Q  5 ggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagccc 87  Q
    |||||||||| |||| ||||||||||||||| | ||||| ||| |||| |||||| ||||||||| |||| ||| ||||||||    
T  17332100 ggagcccgtaaagggccgggctcgggctctatttttccaacccatattcaaaccg-gctttttagcccggcccttaaaagccc 17332181  T

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Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 24682377 - 24682295
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaa 83  Q
    |||||| |||||||||||  |||||||||||||||  |||||||||| ||||||| ||| |||||| |  |||| ||||||||    
T  24682377 cccgggtgcccgtataggcccgggctcgggctctataattccagcccatatttaatccgggcttttcatcccggccctaaaaa 24682295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 145
Target Start/End: Complemental strand, 31488816 - 31488770
Alignment:
Q  99 gggccggcccgaaacggaccgggtagcccgttttgacagctctactt 145  Q
    ||||||| |||||||||||||| || |||||||||||||||||||||    
T  31488816 gggccggaccgaaacggaccggataacccgttttgacagctctactt 31488770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 43780971 - 43780885
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagccc 87  Q
    ||||||||||||||||| | |||||||||||||   | || |||||| |||| |||||| ||||||||| |||| ||| ||||||||    
T  43780971 cccgggagcccgtatagagccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagccc 43780885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 146
Target Start/End: Original strand, 32058147 - 32058286
Alignment:
Q  7 agcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgggccggc 106  Q
    |||||||| |||| |||||||||| |||| | |||||| || |||| |||| |  |||||||| |||  ||| ||||||||    |||| | |||||||     
T  32058147 agcccgtaaagggccgggctcgggttctacttttccagtccatattcaaactggactttttagcccgacccttaaaagcccttgacccggtcgggccggg 32058246  T
Q  107 ccgaaacggaccgggtagcccgttttgacagctctactta 146  Q
    |  |||||| |||||  |||||||||||||||||||||||    
T  32058247 cttaaacgggccggggcgcccgttttgacagctctactta 32058286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 142
Target Start/End: Complemental strand, 40412080 - 40411981
Alignment:
Q  43 agcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgggccggcccgaaacggaccgggtagcccgttttgacagctcta 142  Q
    ||||||| ||| ||||| ||||||| | |||| || | ||||||||  ||||||| |||||||||  |||||| ||||   |||||||||||||||||||    
T  40412080 agcccgtttttcaaccgggctttttggcccggcccgataaagcccgaagcccgttagggccggccataaacgggccggaccgcccgttttgacagctcta 40411981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 12749890 - 12749976
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagccc 87  Q
    |||||||||||| | |||| |||||||||||||   | || |||||| |||| |||||| ||||||||| |||| ||| ||||||||    
T  12749890 cccgggagcccgaagagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagccc 12749976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 145
Target Start/End: Complemental strand, 26467465 - 26467411
Alignment:
Q  91 gcccgtttgggccggcccgaaacggaccgggtagcccgttttgacagctctactt 145  Q
    ||||||| |||||||||| |||||| |||||||||||  ||||||| ||||||||    
T  26467465 gcccgttagggccggccctaaacgggccgggtagccctatttgacaactctactt 26467411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 45566556 - 45566637
Alignment:
Q  4 gggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcc 86  Q
    ||||||||||| || | |||||||||||||| || || |||||| |||| |||||| ||||||||| |||| ||| |||||||    
T  45566556 gggagcccgtaaagagccgggctcgggctct-atttttcagcccatattcaaaccgggctttttagcccggcccttaaaagcc 45566637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 148
Target Start/End: Complemental strand, 23973691 - 23973634
Alignment:
Q  91 gcccgtttgggccggcccgaaacggaccgggtagcccgttttgacagctctacttatt 148  Q
    ||||||| || ||||||| |||||| |||||  ||||||||||||||||||| |||||    
T  23973691 gcccgttaggcccggccctaaacgggccgggccgcccgttttgacagctctagttatt 23973634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 6502018 - 6502086
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttag 69  Q
    |||||||| ||||| |||| ||| ||||||||||| | ||||||||| |||| ||||||  ||||||||    
T  6502018 cccgggagtccgtaaagggccggactcgggctctatttttccagcccatattcaaaccggactttttag 6502086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 47188346 - 47188278
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttag 69  Q
    ||||||| ||||||||||| |||||||||||||   | || |||||| |||| |||||| |||||||||    
T  47188346 cccgggaacccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttag 47188278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 9921 - 9780
Alignment:
Q  1 cccgggagcccgtatagggtcgggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgg 100  Q
    |||||||||||| | |||| |||||||||||||   | || |||||| |||| |||||| ||||||||| |||| ||| ||||||||   |||||   ||    
T  9921 cccgggagcccgaagagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagcccttggcccggccgg 9822  T
Q  101 gccggcccgaaacggaccgggtagcccgttttgacagctcta 142  Q
    ||||| || |||||| |||||  |||||||||||||||||||    
T  9821 gccgggcctaaacgggccgggccgcccgttttgacagctcta 9780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0495 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 142
Target Start/End: Complemental strand, 9884 - 9764
Alignment:
Q  22 gggctcgggctctaatattccagcccgtatttaaaccgagctttttagtccggtcctaaaaagcccgctgcccgtttgggccggcccgaaacggaccggg 121  Q
    |||||||||||||| ||||  ||| ||||||||||| | ||||||||||||| |||||||||| ||| |   || |||||  |||| ||||||||  |||    
T  9884 gggctcgggctctattatttgagctcgtatttaaacagggctttttagtccgatcctaaaaagtccgttattcgcttgggttggcctgaaacggattggg 9785  T
Q  122 tagcccgttttgacagctcta 142  Q
    || |||||||||||| |||||    
T  9784 taacccgttttgacaactcta 9764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 51793 - 51854
Alignment:
Q  81 aaagcccgctgcccgtttgggccggcccgaaacggaccgggtagcccgttttgacagctcta 142  Q
    ||||||||  ||||||| |||||||||| ||||||  ||||  |||||||||||||||||||    
T  51793 aaagcccgaagcccgttagggccggccctaaacgggtcgggccgcccgttttgacagctcta 51854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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