View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1114_high_67 (Length: 336)

Name: NF1114_high_67
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1114_high_67
NF1114_high_67
[»] chr3 (1 HSPs)
chr3 (13-307)||(52477964-52478250)


Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 13 - 307
Target Start/End: Original strand, 52477964 - 52478250
Alignment:
Q  13 aatattcacgtgagatatatatggtatagaagaaagtcatgatatatatggccgaccagcactaaattaaaatttgaaacatgaagttccactttgaaat 112  Q
    ||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52477964 aatattcacgtgagatat----ggtatagaagaaagtcatgatatatatggccgaccagcactaaattaaaatttgaaacatgaagttccactttgaaat 52478059  T
Q  113 agaagtgggagaatgcgtaagcccttgtcaagatatttgataacttgtccaatcatgcttcataatcataattcatacattattaattaacgatcaaatt 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||    
T  52478060 agaagtgggagaatgcgtaagcccttgtcaagatatttgataacttgtccaatcatgcttcataatcataattcatacatt----attaacgatcaaatt 52478155  T
Q  213 aacattagatagtcatggtcatgagtgacgccatgccattgttgacggcctattagcaactggtctagaactgttgttattctcagtggacattt 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52478156 aacattagatagtcatggtcatgagtgacgccatgccattgttgacggcctattagcaactggtctagaactgttgttattctcagtggacattt 52478250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University