View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1114_high_76 (Length: 299)
Name: NF1114_high_76
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_high_76 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 85 - 299
Target Start/End: Original strand, 18353589 - 18353802
Alignment:
| Q |
85 |
aaaaaagtgattaatttaactcttaactcaaaagctcatttatatgatatactaactagcaagcctacttcccttaatcatgacagccacaaccctaaac |
184 |
Q |
| |
|
|||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
18353589 |
aaaaaagtaattactttaactct-aactcaaaagctcatttatatgatatactaactagcaagcctacttcccttaatgatgacagccacaaccctaaac |
18353687 |
T |
|
| Q |
185 |
taatnnnnnnnttacaaaggaatttctttcggccattattaatttgcacactaggattattcctaaagcattaagattgtaataattgttgccatgatga |
284 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18353688 |
taataaaaaaattacaaaggaatttctttcggccattattaatttgcacactaggattattcctaaagcattaagattgtaataattgttgccatgatga |
18353787 |
T |
|
| Q |
285 |
taactatgatgatga |
299 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
18353788 |
taactatgatgatga |
18353802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 37218217 - 37218141
Alignment:
| Q |
14 |
atatgtggggtaataaatataacgaagagatgtttatctagcgttcaacaaatgattgtaaagaaacctctaaaaaa |
90 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
37218217 |
atatgtggggtaataaatataacgaagagatgtttatctagcgttcaacaaatgattataaagaaacctctaaaaaa |
37218141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University