View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1114_high_78 (Length: 290)
Name: NF1114_high_78
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_high_78 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 146; Significance: 6e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 137 - 290
Target Start/End: Original strand, 2018327 - 2018480
Alignment:
| Q |
137 |
gtctcgtccaaagattacggaattaacccttgcacaatattaaccctacaaaaataaaactagggttcacacttatacctcgctgtgaacaagaacaacc |
236 |
Q |
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| T |
2018327 |
gtctcgtccaaagattacggaattaacccttgcacactattaaccctacaaaaataaaactagggttcacacttatacctcgctgtgaacaagaacaacc |
2018426 |
T |
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| Q |
237 |
atggaatcactacctgacgacgttctgtatcacattctgtcgttccttccgacg |
290 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2018427 |
atggaatcactacctgacgacgttctgtgtcacattctgtcgttccttccgacg |
2018480 |
T |
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