View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1114_high_81 (Length: 282)
Name: NF1114_high_81
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_high_81 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 13 - 282
Target Start/End: Complemental strand, 11635495 - 11635225
Alignment:
| Q |
13 |
aatatgagagatttaaaaagacggcaagatcggccaaggacttcaagagactccttcgataggctacataatgaaatctctaactcctctaactgcaaa- |
111 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11635495 |
aatatgagagattttaaaagacggcaagatcggccaaggacttcaagagactccttcgataggctacataatgaaatctctaactcctctaactgcaaaa |
11635396 |
T |
|
| Q |
112 |
gttttctcacagctttgcaaaatccttcatctgaaatgtattggcattctacaagccgcatgcatctcagattagtgccactgcaaatgcataaagccat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11635395 |
gttttctcacagctttgcaaaatccttcatctgaaatgtattggcattctacaagccgcatgcatctcagattagtgccactgcaaatgcataaagccat |
11635296 |
T |
|
| Q |
212 |
cattaagcagcataaaaatttagaaaataaatcatggatgataaaacaatataagcaattgaaatatatac |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
11635295 |
cattaagcagcataaaaatttagaaaataaatcatggatgataaaacaatatacgcaattgaaatatatac |
11635225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 5568994 - 5569051
Alignment:
| Q |
18 |
gagagatttaaaaagacggcaagatcggccaaggacttcaagagactccttcgatagg |
75 |
Q |
| |
|
||||||||| ||| | ||||||||||||| |||||||||||||| ||||| |||||| |
|
|
| T |
5568994 |
gagagattttaaactagggcaagatcggcctaggacttcaagagaatcctttgatagg |
5569051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 5573975 - 5574032
Alignment:
| Q |
18 |
gagagatttaaaaagacggcaagatcggccaaggacttcaagagactccttcgatagg |
75 |
Q |
| |
|
||||||||| ||| | ||||||||||||| |||||||||||||| ||||| |||||| |
|
|
| T |
5573975 |
gagagattttaaactagggcaagatcggcctaggacttcaagagaatcctttgatagg |
5574032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University