View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1114_high_87 (Length: 272)

Name: NF1114_high_87
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1114_high_87
NF1114_high_87
[»] chr8 (6 HSPs)
chr8 (15-253)||(43731528-43731768)
chr8 (121-200)||(43748330-43748409)
chr8 (121-200)||(9944023-9944102)
chr8 (128-200)||(18364532-18364604)
chr8 (128-200)||(35929245-35929317)
chr8 (129-200)||(27547174-27547245)
[»] chr2 (4 HSPs)
chr2 (112-200)||(27282663-27282751)
chr2 (128-200)||(36047048-36047120)
chr2 (128-200)||(36048279-36048351)
chr2 (121-200)||(44206812-44206891)
[»] chr5 (4 HSPs)
chr5 (121-200)||(20190346-20190425)
chr5 (121-200)||(32684976-32685055)
chr5 (121-200)||(8880736-8880815)
chr5 (126-200)||(20200374-20200448)
[»] chr3 (10 HSPs)
chr3 (126-200)||(31604694-31604768)
chr3 (121-200)||(27481708-27481787)
chr3 (127-200)||(39623993-39624066)
chr3 (127-200)||(41665431-41665504)
chr3 (128-200)||(48394383-48394455)
chr3 (129-200)||(52044101-52044172)
chr3 (127-200)||(39918624-39918697)
chr3 (127-200)||(47667108-47667181)
chr3 (127-200)||(48402436-48402509)
chr3 (144-191)||(48413993-48414040)
[»] chr7 (7 HSPs)
chr7 (127-200)||(28040454-28040527)
chr7 (127-200)||(33171122-33171195)
chr7 (127-200)||(44206096-44206169)
chr7 (113-200)||(31516545-31516632)
chr7 (127-200)||(23260674-23260747)
chr7 (128-200)||(39796752-39796824)
chr7 (129-200)||(38538910-38538981)
[»] chr1 (9 HSPs)
chr1 (127-200)||(5031736-5031809)
chr1 (127-200)||(17983258-17983331)
chr1 (127-200)||(20607548-20607621)
chr1 (128-200)||(5757798-5757870)
chr1 (129-200)||(3820306-3820377)
chr1 (129-200)||(41985251-41985322)
chr1 (127-200)||(20610819-20610892)
chr1 (132-200)||(6073242-6073310)
chr1 (129-200)||(41987968-41988039)
[»] chr4 (1 HSPs)
chr4 (128-200)||(24267487-24267559)
[»] scaffold0012 (1 HSPs)
scaffold0012 (127-190)||(184931-184994)
[»] chr6 (1 HSPs)
chr6 (146-178)||(30899737-30899769)


Alignment Details
Target: chr8 (Bit Score: 165; Significance: 3e-88; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 15 - 253
Target Start/End: Complemental strand, 43731768 - 43731528
Alignment:
Q  15 cacagaagagctcagtttctattagtaaaacggcgcattatattcgacactttagcaactgagacgaagctgtacagaataacaagttagaagaatgaaa 114  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||   |||||||||||||||    
T  43731768 cacagaagagctcagtttctattagtaaaacggtgcattatattcgacactt-agcaactgagacgaagctgtacagaataagtcgttagaagaatgaaa 43731670  T
Q  115 attgatatcaaaaagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg---nnnnnnnnnct 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |    
T  43731669 attgatatcaaaaagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcgtttttttttttttt 43731570  T
Q  212 tcccatatacccaaagcaaaacgatcgattcttcctcctccg 253  Q
    |  |||||||||||||||||||||||||||||||||||||||    
T  43731569 tttcatatacccaaagcaaaacgatcgattcttcctcctccg 43731528  T

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Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 121 - 200
Target Start/End: Complemental strand, 43748409 - 43748330
Alignment:
Q  121 atcaaaaagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43748409 atcaaaaagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 43748330  T

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Target: chr8; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 121 - 200
Target Start/End: Complemental strand, 9944102 - 9944023
Alignment:
Q  121 atcaaaaagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 200  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  9944102 atcaacaagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 9944023  T

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Target: chr8; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 128 - 200
Target Start/End: Original strand, 18364532 - 18364604
Alignment:
Q  128 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  18364532 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 18364604  T

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Target: chr8; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 128 - 200
Target Start/End: Original strand, 35929245 - 35929317
Alignment:
Q  128 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  35929245 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 35929317  T

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Target: chr8; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 129 - 200
Target Start/End: Original strand, 27547174 - 27547245
Alignment:
Q  129 gtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27547174 gtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 27547245  T

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Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 112 - 200
Target Start/End: Complemental strand, 27282751 - 27282663
Alignment:
Q  112 aaaattgatatcaaaaagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 200  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27282751 aaaatagacatcaaaaagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 27282663  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 128 - 200
Target Start/End: Original strand, 36047048 - 36047120
Alignment:
Q  128 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36047048 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 36047120  T

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Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 128 - 200
Target Start/End: Original strand, 36048279 - 36048351
Alignment:
Q  128 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36048279 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 36048351  T

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Target: chr2; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 121 - 200
Target Start/End: Original strand, 44206812 - 44206891
Alignment:
Q  121 atcaaaaagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 200  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  44206812 atcaaacagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccggattcgatccccggcagcggcg 44206891  T

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Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 121 - 200
Target Start/End: Complemental strand, 20190425 - 20190346
Alignment:
Q  121 atcaaaaagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  20190425 atcaaaaagtcgttgtagtatagtggtaagtattcccgcctgtcacgtgggtgacccgggttcgatccccggcagcggcg 20190346  T

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Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 121 - 200
Target Start/End: Original strand, 32684976 - 32685055
Alignment:
Q  121 atcaaaaagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 200  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32684976 atcaaagagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 32685055  T

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Target: chr5; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 121 - 200
Target Start/End: Original strand, 8880736 - 8880815
Alignment:
Q  121 atcaaaaagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 200  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8880736 atcaaatagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 8880815  T

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Target: chr5; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 126 - 200
Target Start/End: Complemental strand, 20200448 - 20200374
Alignment:
Q  126 aaagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 200  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||| ||||||||    
T  20200448 aaagtcgttgtagtatagtggtaagtattcctgcctgtcatgcgggtgacccgggtttgatccccgacagcggcg 20200374  T

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Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 126 - 200
Target Start/End: Original strand, 31604694 - 31604768
Alignment:
Q  126 aaagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31604694 aaagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 31604768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 121 - 200
Target Start/End: Complemental strand, 27481787 - 27481708
Alignment:
Q  121 atcaaaaagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 200  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27481787 atcaaacagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgatccgggttcgatccccggcagcggcg 27481708  T

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Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 127 - 200
Target Start/End: Complemental strand, 39624066 - 39623993
Alignment:
Q  127 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  39624066 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 39623993  T

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Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 127 - 200
Target Start/End: Complemental strand, 41665504 - 41665431
Alignment:
Q  127 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  41665504 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 41665431  T

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Target: chr3; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 128 - 200
Target Start/End: Complemental strand, 48394455 - 48394383
Alignment:
Q  128 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  48394455 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 48394383  T

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Target: chr3; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 129 - 200
Target Start/End: Original strand, 52044101 - 52044172
Alignment:
Q  129 gtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  52044101 gtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 52044172  T

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Target: chr3; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 127 - 200
Target Start/End: Complemental strand, 39918697 - 39918624
Alignment:
Q  127 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 200  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  39918697 aagttgttgtagtatagtggtaagtattcccgcctgtcacacgggtgacccgggttcgatccccggcaacggcg 39918624  T

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Target: chr3; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 127 - 200
Target Start/End: Complemental strand, 47667181 - 47667108
Alignment:
Q  127 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||    
T  47667181 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcaagtgacccgggttcgatccccggcaacggcg 47667108  T

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Target: chr3; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 127 - 200
Target Start/End: Complemental strand, 48402509 - 48402436
Alignment:
Q  127 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 200  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||| | ||| |||||| |||| |||||    
T  48402509 aagttgttgtagtatagtggtaagtattcccgtctgtcacgcgggtgacctgagtttgatccctggcaacggcg 48402436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 191
Target Start/End: Complemental strand, 48414040 - 48413993
Alignment:
Q  144 tggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccg 191  Q
    |||||||||||||||| ||||||||||||||| |||||| ||||||||    
T  48414040 tggtaagtattcccgcttgtcacgcgggtgactcgggtttgatccccg 48413993  T

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Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 127 - 200
Target Start/End: Complemental strand, 28040527 - 28040454
Alignment:
Q  127 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28040527 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 28040454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 127 - 200
Target Start/End: Original strand, 33171122 - 33171195
Alignment:
Q  127 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33171122 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 33171195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 127 - 200
Target Start/End: Original strand, 44206096 - 44206169
Alignment:
Q  127 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44206096 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 44206169  T

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Target: chr7; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 113 - 200
Target Start/End: Original strand, 31516545 - 31516632
Alignment:
Q  113 aaattgatatcaaaaagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 200  Q
    ||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  31516545 aaattgataacaccaagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatcctcggcagcggcg 31516632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 127 - 200
Target Start/End: Original strand, 23260674 - 23260747
Alignment:
Q  127 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  23260674 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 23260747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 128 - 200
Target Start/End: Complemental strand, 39796824 - 39796752
Alignment:
Q  128 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  39796824 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 39796752  T

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Target: chr7; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 129 - 200
Target Start/End: Original strand, 38538910 - 38538981
Alignment:
Q  129 gtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  38538910 gtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 38538981  T

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Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 127 - 200
Target Start/End: Original strand, 5031736 - 5031809
Alignment:
Q  127 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5031736 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 5031809  T

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Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 127 - 200
Target Start/End: Original strand, 17983258 - 17983331
Alignment:
Q  127 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17983258 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 17983331  T

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Target: chr1; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 127 - 200
Target Start/End: Original strand, 20607548 - 20607621
Alignment:
Q  127 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20607548 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 20607621  T

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Target: chr1; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 128 - 200
Target Start/End: Original strand, 5757798 - 5757870
Alignment:
Q  128 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5757798 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 5757870  T

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Target: chr1; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 129 - 200
Target Start/End: Complemental strand, 3820377 - 3820306
Alignment:
Q  129 gtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3820377 gtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 3820306  T

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Target: chr1; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 129 - 200
Target Start/End: Original strand, 41985251 - 41985322
Alignment:
Q  129 gtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  41985251 gtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcaatccccggcagcggcg 41985322  T

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Target: chr1; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 127 - 200
Target Start/End: Original strand, 20610819 - 20610892
Alignment:
Q  127 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 200  Q
    |||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  20610819 aagttgttgtagtatagtggtaagtattcccgcttgtcacccgggtgacccgggttcgatccccggcagcggcg 20610892  T

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Target: chr1; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 132 - 200
Target Start/End: Complemental strand, 6073310 - 6073242
Alignment:
Q  132 gttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 200  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  6073310 gttgtagtatagtggtaagtattcccacctgtcacgcgggtgacccgggttcgatccccggcaacggcg 6073242  T

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Target: chr1; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 129 - 200
Target Start/End: Original strand, 41987968 - 41988039
Alignment:
Q  129 gtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 200  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||    
T  41987968 gtcgttgtagtatagtggtaagtattcccgcctgtcacccgggtgacccaggtttgatccccggcagcggcg 41988039  T

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Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 128 - 200
Target Start/End: Complemental strand, 24267559 - 24267487
Alignment:
Q  128 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 200  Q
    ||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||| |||||    
T  24267559 agtcgttgtagtatagtggtaagtatttccgcctgtcacgcggacgacccgggttcgatccccggcaacggcg 24267487  T

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Target: scaffold0012 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 190
Target Start/End: Original strand, 184931 - 184994
Alignment:
Q  127 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatcccc 190  Q
    |||| ||||||||||||||||||||||| ||  |||||| |||||||| |||||||| ||||||    
T  184931 aagttgttgtagtatagtggtaagtatttccatctgtcatgcgggtgatccgggttcaatcccc 184994  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 178
Target Start/End: Original strand, 30899737 - 30899769
Alignment:
Q  146 gtaagtattcccgcctgtcacgcgggtgacccg 178  Q
    |||||||||||||||||||||||||||||||||    
T  30899737 gtaagtattcccgcctgtcacgcgggtgacccg 30899769  T

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