View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1114_high_9 (Length: 563)
Name: NF1114_high_9
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 30 - 487
Target Start/End: Complemental strand, 24620104 - 24619646
Alignment:
| Q |
30 |
tatatcatttattaacaactatcaactaacttgg-tgaccttccatcaatttatattgtttaaatgatatcttgagaggttaaaagagggttgattttca |
128 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24620104 |
tatatcatttattaacaactatcaactaactttgctgaccttccatcaatttatattgtttaaatgatatcttgagaggttaaaagagggttgattttca |
24620005 |
T |
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| Q |
129 |
tgtttggatatgattaaatgtccctattttgtggaacaaacgttaataggtgatggaaactagccannnnnnncttttcttgtaatgacagttggaattt |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
24620004 |
tgtttggatatgattaaatgtccctattttgtggaacaaacgttaataggtgatggaaactagccatttttttcttttcttgtaatgacagttggaattt |
24619905 |
T |
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| Q |
229 |
aagtttggtggctaagtctcatattgattaggaatgaggatatgttgagaggcgacacacatacttaatatcttaaagttttttaatgatcatggatgtc |
328 |
Q |
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||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
24619904 |
aagtttggtggttaagtctcatattgattaggaatgaggacatgttgagaggcgacacacatacttaataccttaaagtcttttaatgatcatggatgtc |
24619805 |
T |
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| Q |
329 |
taggctcggtgggagagtggggccaggatcatagtgtggatcaagttggtgatgtgggtgactcacacttgtgtcaaagattgttgaagttcaagtgtga |
428 |
Q |
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|| | ||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
24619804 |
taagatcggtggaagagtggagccaggatcatagtgtggatcaagttagtgatgtgggtgactcacacttgtgccaaagattgttgaagttcaagtgtga |
24619705 |
T |
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| Q |
429 |
gtgttaagtctcatatcaactaggatacgtgagtgactcacacttaaaggagatattgt |
487 |
Q |
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| T |
24619704 |
gtgttaagtctcatatcaactaggatacgtgagtgactcacacttgaaggggatattgt |
24619646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 329 - 431
Target Start/End: Complemental strand, 2954473 - 2954371
Alignment:
| Q |
329 |
taggctcggtgggagagtggggccaggatcatagtgtggatcaagttggtgatgtgggtgactcacacttgtgtcaaagattgttgaagttcaagtgtga |
428 |
Q |
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||||||||||||| ||||||| || |||| |||||||||||||| | ||||||||||||||||||||||| | |||||||||| ||||||||||| |
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| T |
2954473 |
taggctcggtgggggagtgggagcaagatcctagtgtggatcaagctagtgatgtgggtgactcacacttgagggggagattgttgagtttcaagtgtga |
2954374 |
T |
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| Q |
429 |
gtg |
431 |
Q |
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||| |
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| T |
2954373 |
gtg |
2954371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 329 - 399
Target Start/End: Complemental strand, 5981690 - 5981621
Alignment:
| Q |
329 |
taggctcggtgggagagtggggccaggatcatagtgtggatcaagttggtgatgtgggtgactcacacttg |
399 |
Q |
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| T |
5981690 |
taggctcggtggg-gagtgggagcgggatcctagtgtggatcaggctagtgatgtgggtgactcacgcttg |
5981621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 399
Target Start/End: Complemental strand, 40196044 - 40195999
Alignment:
| Q |
354 |
ggatcatagtgtggatcaagttggtgatgtgggtgactcacacttg |
399 |
Q |
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||||| |||||||||||| | | ||||||||||||||||||||||| |
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| T |
40196044 |
ggatcctagtgtggatcaggctagtgatgtgggtgactcacacttg |
40195999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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