View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1114_high_91 (Length: 267)
Name: NF1114_high_91
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_high_91 |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 44 - 257
Target Start/End: Original strand, 37134898 - 37135111
Alignment:
| Q |
44 |
aaaatttaaagattaaaattaaattgatggtttgaagctagctagaaactagattaatgttatatacatatacatagggtggaaagcaagctcaatgtag |
143 |
Q |
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| T |
37134898 |
aaaattaaaagattaaaattaaattgatggtttgaagctagctagaaactagattaatgttatatacatatacatagggtggaaagcaagttcaatgtag |
37134997 |
T |
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| Q |
144 |
ttgtcattctctaacaagttaaccaaatatttgtttacaaacgtactaaaattaccgtnnnnnnntggtagaccattcatagcaatattgtagttgaatc |
243 |
Q |
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| T |
37134998 |
ttgtcattctctaacaagttaaccaaatatttgtttacaaacgtactaaaattaccgtaaaaaaatggtagaccattcatagcaatattgtagttgaatc |
37135097 |
T |
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| Q |
244 |
ataggttagtataa |
257 |
Q |
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| T |
37135098 |
ataggttagtataa |
37135111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 37134834 - 37134885
Alignment:
| Q |
1 |
aaatcaaagaggtggtgagacataatttaaggaaaa-tccttttaaaattta |
51 |
Q |
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| T |
37134834 |
aaatcaaagaggtggtgagacataatttaaggaaaattccttttaaaattta |
37134885 |
T |
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