View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1114_high_98 (Length: 259)
Name: NF1114_high_98
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_high_98 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 44406921 - 44406694
Alignment:
| Q |
1 |
attgacaccaatttttgttcnnnnnnnataatttcatgcggctactattttaatcnnnnnnnttatagtctattttttatatcttattaaactagctacc |
100 |
Q |
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| T |
44406921 |
attgacaccaatttttgttctttttttataatttcatgcggctactattttaatcaaaaaaattatagtctattttttataacttattaaacta----cc |
44406826 |
T |
|
| Q |
101 |
agtattgaatattgattgaataccctatcaaagtaatttgctaatcaaagttcattaaatatttcattgtctttcaacaatgaatgtattttcctctaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44406825 |
agtattgaatattgattgaataccctatcaaagtaatttgctaatcaaagttcattaaatatttcattgtctttcaacaatgaatgtattttcctctaaa |
44406726 |
T |
|
| Q |
201 |
tgagttcattaattgttcggctgaagtccttg |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
44406725 |
tgagttcattaattgttcggctgaagtccttg |
44406694 |
T |
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