View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1114_high_99 (Length: 257)

Name: NF1114_high_99
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1114_high_99
NF1114_high_99
[»] chr4 (31 HSPs)
chr4 (3-113)||(8528959-8529069)
chr4 (1-100)||(40636907-40637006)
chr4 (1-101)||(18586655-18586755)
chr4 (1-100)||(16489040-16489139)
chr4 (1-100)||(31300113-31300212)
chr4 (171-228)||(4556325-4556382)
chr4 (171-228)||(15831000-15831057)
chr4 (171-228)||(16689206-16689263)
chr4 (1-101)||(11853241-11853341)
chr4 (174-228)||(4884736-4884790)
chr4 (1-78)||(15312033-15312110)
chr4 (1-78)||(15316669-15316746)
chr4 (171-228)||(15316817-15316874)
chr4 (1-78)||(15830852-15830929)
chr4 (171-228)||(18586825-18586882)
chr4 (171-228)||(31300283-31300340)
chr4 (171-216)||(4569954-4569999)
chr4 (171-228)||(8529126-8529183)
chr4 (171-228)||(16489209-16489265)
chr4 (1-109)||(16689326-16689433)
chr4 (171-226)||(25699609-25699663)
chr4 (1-113)||(4556440-4556546)
chr4 (1-113)||(8631811-8631923)
chr4 (1-80)||(4884570-4884649)
chr4 (177-228)||(16638692-16638742)
chr4 (1-47)||(2485308-2485354)
chr4 (171-228)||(11853410-11853467)
chr4 (171-226)||(7050499-7050551)
chr4 (1-48)||(25699440-25699487)
chr4 (1-47)||(6764693-6764739)
chr4 (171-200)||(36769306-36769335)
[»] chr3 (54 HSPs)
chr3 (1-101)||(22627556-22627656)
chr3 (1-100)||(16461892-16461991)
chr3 (1-101)||(54188198-54188298)
chr3 (1-101)||(5858236-5858336)
chr3 (1-101)||(10896694-10896794)
chr3 (1-101)||(29914345-29914445)
chr3 (1-101)||(29963498-29963598)
chr3 (171-228)||(5858405-5858462)
chr3 (171-228)||(47878437-47878494)
chr3 (171-228)||(54193084-54193141)
chr3 (1-78)||(10595425-10595502)
chr3 (171-228)||(48390486-48390543)
chr3 (171-228)||(54188367-54188424)
chr3 (172-228)||(20031580-20031636)
chr3 (14-101)||(6303015-6303102)
chr3 (1-100)||(10613171-10613270)
chr3 (171-228)||(4535473-4535530)
chr3 (171-228)||(10613044-10613101)
chr3 (171-228)||(10949525-10949581)
chr3 (1-78)||(47878565-47878642)
chr3 (2-101)||(10094459-10094558)
chr3 (1-56)||(54192936-54192991)
chr3 (1-101)||(10208391-10208491)
chr3 (171-228)||(22626250-22626306)
chr3 (171-216)||(47883159-47883204)
chr3 (17-101)||(27543980-27544064)
chr3 (4-113)||(9604998-9605108)
chr3 (1-99)||(10100484-10100582)
chr3 (2-101)||(10201345-10201444)
chr3 (1-113)||(4308667-4308779)
chr3 (171-228)||(10896864-10896921)
chr3 (1-113)||(51727392-51727504)
chr3 (171-211)||(11079377-11079417)
chr3 (171-228)||(27762252-27762307)
chr3 (171-228)||(29914219-29914276)
chr3 (3-78)||(48390634-48390710)
chr3 (1-78)||(20031764-20031843)
chr3 (3-49)||(4535303-4535349)
chr3 (171-228)||(6303171-6303228)
chr3 (171-228)||(10094338-10094395)
chr3 (171-228)||(10201218-10201275)
chr3 (171-228)||(10208264-10208321)
chr3 (171-228)||(16462062-16462119)
chr3 (1-47)||(35918401-35918447)
chr3 (184-228)||(10100355-10100400)
chr3 (1-113)||(25690742-25690854)
chr3 (3-47)||(29956258-29956302)
chr3 (3-47)||(30005413-30005457)
chr3 (171-217)||(10595310-10595354)
chr3 (1-48)||(10949724-10949771)
chr3 (1-48)||(27762471-27762518)
chr3 (1-47)||(43225866-43225912)
chr3 (171-200)||(3329720-3329749)
chr3 (172-200)||(7768505-7768533)
[»] chr7 (33 HSPs)
chr7 (1-100)||(44512919-44513018)
chr7 (1-100)||(25351044-25351143)
chr7 (1-100)||(25356738-25356837)
chr7 (1-78)||(7464913-7464990)
chr7 (1-78)||(30246681-30246758)
chr7 (1-78)||(8378833-8378910)
chr7 (1-101)||(3320440-3320540)
chr7 (3-78)||(34547257-34547332)
chr7 (171-228)||(30246829-30246886)
chr7 (171-228)||(34547129-34547186)
chr7 (171-228)||(44512791-44512848)
chr7 (1-101)||(3325188-3325288)
chr7 (171-228)||(25409990-25410046)
chr7 (1-101)||(7069472-7069572)
chr7 (171-226)||(7464786-7464841)
chr7 (171-228)||(25351213-25351269)
chr7 (171-228)||(25356907-25356963)
chr7 (1-78)||(25409842-25409919)
chr7 (1-101)||(7074479-7074579)
chr7 (1-101)||(25405085-25405185)
chr7 (1-113)||(40946113-40946225)
chr7 (171-228)||(44011017-44011073)
chr7 (171-228)||(44016928-44016984)
chr7 (171-216)||(44144143-44144188)
chr7 (184-229)||(3320313-3320359)
chr7 (184-229)||(3325061-3325107)
chr7 (171-228)||(7069641-7069698)
chr7 (171-228)||(7074648-7074705)
chr7 (171-228)||(8378770-8378827)
chr7 (171-228)||(25405254-25405311)
chr7 (184-228)||(15541259-15541304)
chr7 (172-228)||(42006524-42006579)
chr7 (17-53)||(2120626-2120662)
[»] chr6 (38 HSPs)
chr6 (1-100)||(17695244-17695343)
chr6 (1-101)||(25466292-25466392)
chr6 (1-101)||(13878419-13878519)
chr6 (171-228)||(17695117-17695174)
chr6 (171-228)||(25466165-25466222)
chr6 (1-101)||(30975089-30975189)
chr6 (1-101)||(30981528-30981628)
chr6 (1-101)||(30987692-30987792)
chr6 (171-228)||(13467729-13467786)
chr6 (171-228)||(22352118-22352175)
chr6 (171-228)||(25941504-25941561)
chr6 (1-101)||(13883167-13883267)
chr6 (173-228)||(22343067-22343122)
chr6 (1-78)||(25941356-25941433)
chr6 (1-113)||(26084764-26084876)
chr6 (171-228)||(33215686-33215743)
chr6 (1-101)||(26887615-26887715)
chr6 (1-101)||(31249104-31249204)
chr6 (1-101)||(35201716-35201816)
chr6 (1-101)||(16785611-16785711)
chr6 (187-226)||(3577782-3577821)
chr6 (171-228)||(5166081-5166137)
chr6 (1-113)||(22343184-22343296)
chr6 (17-101)||(33215533-33215617)
chr6 (1-45)||(35209007-35209051)
chr6 (171-228)||(13878588-13878645)
chr6 (171-228)||(13883336-13883393)
chr6 (1-47)||(26064795-26064841)
chr6 (171-228)||(30974963-30975020)
chr6 (171-228)||(30981402-30981459)
chr6 (171-228)||(30987566-30987623)
chr6 (171-228)||(31248978-31249035)
chr6 (171-228)||(35201590-35201647)
chr6 (171-228)||(35208825-35208882)
chr6 (1-46)||(1230683-1230728)
chr6 (2-43)||(13467955-13467996)
chr6 (171-228)||(16785780-16785837)
chr6 (171-228)||(26887488-26887545)
[»] chr2 (37 HSPs)
chr2 (1-100)||(22717618-22717717)
chr2 (1-100)||(20055162-20055261)
chr2 (1-100)||(20050416-20050515)
chr2 (1-101)||(33674797-33674897)
chr2 (1-100)||(12781613-12781712)
chr2 (171-228)||(22712782-22712839)
chr2 (1-78)||(27518035-27518112)
chr2 (1-78)||(30478705-30478782)
chr2 (171-228)||(35894527-35894584)
chr2 (171-228)||(20050288-20050345)
chr2 (171-228)||(20055031-20055088)
chr2 (171-228)||(30478853-30478910)
chr2 (171-228)||(37171018-37171075)
chr2 (4-78)||(35894655-35894729)
chr2 (171-228)||(12781487-12781543)
chr2 (1-78)||(22712910-22712987)
chr2 (1-101)||(45567101-45567201)
chr2 (171-228)||(38190857-38190913)
chr2 (1-101)||(2735897-2735997)
chr2 (171-228)||(27517905-27517964)
chr2 (1-101)||(39679737-39679837)
chr2 (1-46)||(2740633-2740678)
chr2 (171-216)||(17943397-17943442)
chr2 (1-45)||(39686675-39686719)
chr2 (1-56)||(17943249-17943304)
chr2 (1-45)||(17462127-17462171)
chr2 (171-226)||(17932493-17932548)
chr2 (1-104)||(37171140-37171244)
chr2 (171-228)||(2736066-2736123)
chr2 (171-228)||(2740802-2740859)
chr2 (171-228)||(17462297-17462354)
chr2 (171-228)||(22717491-22717548)
chr2 (187-228)||(33674671-33674713)
chr2 (171-228)||(39686844-39686901)
chr2 (171-228)||(45567270-45567327)
chr2 (171-226)||(39679906-39679961)
chr2 (1-48)||(38190688-38190735)
[»] chr8 (30 HSPs)
chr8 (1-101)||(9021499-9021599)
chr8 (4-101)||(29555178-29555275)
chr8 (1-101)||(28895192-28895292)
chr8 (171-228)||(9021373-9021430)
chr8 (171-228)||(21033729-21033786)
chr8 (1-101)||(16752913-16753013)
chr8 (171-228)||(3276203-3276260)
chr8 (171-228)||(29555051-29555108)
chr8 (1-101)||(4812879-4812979)
chr8 (1-101)||(25684335-25684435)
chr8 (171-228)||(590653-590710)
chr8 (1-78)||(16757660-16757737)
chr8 (1-113)||(21033559-21033671)
chr8 (1-78)||(590505-590582)
chr8 (1-101)||(28327600-28327700)
chr8 (1-101)||(28332323-28332423)
chr8 (1-78)||(3275991-3276069)
chr8 (1-113)||(22685054-22685166)
chr8 (171-228)||(4812751-4812808)
chr8 (171-228)||(25684504-25684561)
chr8 (171-228)||(28327769-28327826)
chr8 (171-228)||(28332492-28332549)
chr8 (171-228)||(15944733-15944789)
chr8 (171-228)||(23179827-23179884)
chr8 (171-226)||(15949394-15949448)
chr8 (4-50)||(23180003-23180049)
chr8 (171-228)||(28895361-28895418)
chr8 (171-216)||(2267301-2267346)
chr8 (171-215)||(17799720-17799764)
chr8 (171-215)||(33032496-33032540)
[»] chr5 (24 HSPs)
chr5 (1-101)||(2298389-2298489)
chr5 (1-101)||(25452185-25452285)
chr5 (172-228)||(1240288-1240344)
chr5 (1-109)||(42237993-42238101)
chr5 (171-228)||(22672693-22672750)
chr5 (171-228)||(40222622-40222679)
chr5 (1-109)||(40222453-40222561)
chr5 (1-78)||(35385846-35385923)
chr5 (171-228)||(35385718-35385775)
chr5 (171-228)||(42238163-42238219)
chr5 (1-101)||(1170503-1170603)
chr5 (1-113)||(1240117-1240229)
chr5 (1-113)||(6747083-6747195)
chr5 (1-113)||(10529487-10529599)
chr5 (171-228)||(17841516-17841572)
chr5 (1-78)||(22672543-22672620)
chr5 (172-228)||(1170673-1170729)
chr5 (1-113)||(6744840-6744952)
chr5 (171-228)||(10627222-10627278)
chr5 (6-45)||(25445263-25445302)
chr5 (171-228)||(2298267-2298324)
chr5 (1-47)||(4409836-4409882)
chr5 (171-228)||(25452354-25452411)
chr5 (171-228)||(26406739-26406795)
[»] scaffold0131 (2 HSPs)
scaffold0131 (1-101)||(30832-30932)
scaffold0131 (171-228)||(31002-31059)
[»] scaffold0004 (2 HSPs)
scaffold0004 (171-228)||(188508-188565)
scaffold0004 (4-78)||(188637-188711)
[»] chr1 (18 HSPs)
chr1 (1-82)||(2232301-2232382)
chr1 (171-228)||(9526325-9526382)
chr1 (171-228)||(21353612-21353669)
chr1 (1-78)||(21353741-21353818)
chr1 (1-101)||(9521406-9521506)
chr1 (1-101)||(9526156-9526256)
chr1 (171-228)||(25133931-25133987)
chr1 (1-46)||(2393728-2393773)
chr1 (3-78)||(25133722-25133798)
chr1 (171-228)||(2232458-2232515)
chr1 (171-228)||(9521574-9521631)
chr1 (1-46)||(2401642-2401687)
chr1 (1-33)||(23689313-23689345)
chr1 (1-47)||(2617319-2617365)
chr1 (171-200)||(2393575-2393604)
chr1 (171-200)||(2401489-2401518)
chr1 (171-228)||(3091373-3091428)
chr1 (171-215)||(4144979-4145023)
[»] scaffold0209 (2 HSPs)
scaffold0209 (171-228)||(17252-17309)
scaffold0209 (1-78)||(17380-17457)
[»] scaffold0256 (2 HSPs)
scaffold0256 (1-101)||(16015-16115)
scaffold0256 (171-228)||(16184-16241)
[»] scaffold1764 (2 HSPs)
scaffold1764 (1-78)||(1147-1224)
scaffold1764 (184-228)||(1307-1352)
[»] scaffold0006 (2 HSPs)
scaffold0006 (1-45)||(224532-224576)
scaffold0006 (171-228)||(224680-224737)
[»] scaffold0552 (1 HSPs)
scaffold0552 (1-47)||(1264-1310)


Alignment Details
Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 3 - 113
Target Start/End: Original strand, 8528959 - 8529069
Alignment:
Q  3 cacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatggtg 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  8528959 cacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctactggaaaaatcgtgccacgatgaagccgcatcgtgccacgatggtg 8529058  T
Q  103 cgattgaagat 113  Q
    |||||||||||    
T  8529059 cgattgaagat 8529069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 40636907 - 40637006
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||  |||||||||||||||||||||||||||||||||||    
T  40636907 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctactggaaatttcgtgccacgatgaagccgcatcgtgccacgatgg 40637006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 18586655 - 18586755
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||| |||||    
T  18586655 gccacgatggagaagcatcgcaccacgattgttgaagcaagattctgaggaagctactggaaaaattgtgccacgatgaagccgcatcgtgccatgatgg 18586754  T
Q  101 t 101  Q
    |    
T  18586755 t 18586755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 16489040 - 16489139
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||   |||||||| ||||||||||||||||||||||||||    
T  16489040 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgagggagctactggaattttcgtgccatgatgaagccgcatcgtgccacgatgg 16489139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 31300113 - 31300212
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||  ||||||||||||||| ||| | |||| ||||||||    
T  31300113 gccacgatggagaagcatcacgccacgattgttgaagcaagattctgaggaagctactggaaatttcgtgccacgatgaatccgtaacgtggcacgatgg 31300212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 4556382 - 4556325
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4556382 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 4556325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 15831000 - 15831057
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15831000 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 15831057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 16689263 - 16689206
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16689263 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 16689206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 11853241 - 11853341
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||   |||||  |||| |||  |||||||||||||||||| ||||| ||||||||||    
T  11853241 gccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacattggaaatttcgtgccacgatgaagcctcatcgcgccacgatgg 11853340  T
Q  101 t 101  Q
    |    
T  11853341 t 11853341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 174 - 228
Target Start/End: Original strand, 4884736 - 4884790
Alignment:
Q  174 tataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4884736 tataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 4884790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 15312033 - 15312110
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatg 78  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||  |||||| ||||||    
T  15312033 gccacgatggagaagcatcgcaccacgattgttgaagcaagattctaaggaagctactgaaaatttcgtgcaacgatg 15312110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 15316669 - 15316746
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatg 78  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |  |||  |||||||||||||    
T  15316669 gccacgatggagaagcatcgcgtcacgattgttgaagcaagattctgaggaagctactagaaatttcgtgccacgatg 15316746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 15316817 - 15316874
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  15316817 cactataaatataagccttgtatcagatggtaaagtgtgtagaaaaacagggtttaga 15316874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 15830852 - 15830929
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatg 78  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| || |||  |||||||||||||    
T  15830852 gccacgatggagaagcatcacgccacgattgttgaagcaagattctgagggagctactggaaatttcgtgccacgatg 15830929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 18586825 - 18586882
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  18586825 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaatagggtttaga 18586882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 31300283 - 31300340
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  31300283 cactataaatataagctttgtatcatatgataaagtgtgtagaaaaacagggtttaga 31300340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 4569954 - 4569999
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  4569954 cactataaatataagccttgtatcagatgataaagtgtgtagaaaa 4569999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 8529126 - 8529183
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||    
T  8529126 cactataaatataagctttgtatcagatcataaagtgtgtagaaaaatagggtttaga 8529183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 16489209 - 16489265
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  16489209 cactatgaatataagccttgtatcagatgataaagtgtgtag-aaaacagggtttaga 16489265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 16689433 - 16689326
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    |||||||||||||||| |||  || |||||||||||||||| || ||| | ||  | || ||||||||||||||||||||  |||| |||| ||||||||    
T  16689433 gccacgatggagaagc-tcgttccgcgattgttgaagcaagtttttgaagcagtcactggaaaaatcgtgccacgatgaaatcgcaacgtggcacgatgg 16689335  T
Q  101 tgcgattga 109  Q
    |||||||||    
T  16689334 tgcgattga 16689326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 25699609 - 25699663
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggttta 226  Q
    ||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||    
T  25699609 cactataaatataagtcttgtatcatatgataaagtgtgtag-aaaacagggttta 25699663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 4556546 - 4556440
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    ||||||||||||||||| |  |||||||||||||||  ||| |||||| | ||       ||||||||||||||||||||  |||| |||| ||||||||    
T  4556546 gccacgatggagaagcaacatgccacgattgttgaaataagtttctgaagcagg------aaaaatcgtgccacgatgaaatcgcaacgtggcacgatgg 4556453  T
Q  101 tgcgattgaagat 113  Q
    |||||||||||||    
T  4556452 tgcgattgaagat 4556440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 8631923 - 8631811
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattct-gaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatg 99  Q
    |||||||||||||||| ||| ||||||||||||||||||| ||||| ||  || | | | |||||||||||||| |||     || ||||||||||||||    
T  8631923 gccacgatggagaagcttcgtgccacgattgttgaagcaaaattctggaacaatc-actaaaaaaatcgtgccaagattggatcgaatcgtgccacgatg 8631825  T
Q  100 gtgcgattgaagat 113  Q
    ||||||||||||||    
T  8631824 gtgcgattgaagat 8631811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 4884570 - 4884649
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaa 80  Q
    ||||||||||||||||| || | ||||||||||||||||||||||| | | ||  | || |||||| |||||||||||||    
T  4884570 gccacgatggagaagcaacgtgtcacgattgttgaagcaagattctaaagcagtcactggaaaaattgtgccacgatgaa 4884649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 228
Target Start/End: Original strand, 16638692 - 16638742
Alignment:
Q  177 aaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    |||||||| ||||||||||||||| ||||||||||| |||||||||||||||    
T  16638692 aaatataaaccttgtatcagatgaaaaagtgtgtag-aaaacagggtttaga 16638742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 2485354 - 2485308
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctg 47  Q
    |||||||||||||||| ||| ||||||||||||||||||| ||||||    
T  2485354 gccacgatggagaagcttcgtgccacgattgttgaagcaaaattctg 2485308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 11853410 - 11853467
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||    
T  11853410 cactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttaga 11853467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 7050551 - 7050499
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaac-agggttta 226  Q
    ||||||||||||||||||||||    |||||||||||||||||||||| ||||||||    
T  7050551 cactataaatataagccttgta----atgataaagtgtgtagaaaaactagggttta 7050499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 25699440 - 25699487
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctga 48  Q
    ||||||||||||||||| || ||||||||||||||| |||||| ||||    
T  25699440 gccacgatggagaagcaacgtgccacgattgttgaaacaagatcctga 25699487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 6764693 - 6764739
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctg 47  Q
    ||||||||| |||||| ||| ||||||||||||||||||| ||||||    
T  6764693 gccacgatgtagaagcttcgtgccacgattgttgaagcaaaattctg 6764739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 200
Target Start/End: Original strand, 36769306 - 36769335
Alignment:
Q  171 cactataaatataagccttgtatcagatga 200  Q
    ||||||||||||||||||||||||||||||    
T  36769306 cactataaatataagccttgtatcagatga 36769335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 54)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 22627656 - 22627556
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||  ||||||||||||||    
T  22627656 gccacgatggagaagcatctcgccacgattgttgaagcaagattctgaggaagctactggaaaaatcgtgccacgatgaagccgtgtcgtgccacgatgg 22627557  T
Q  101 t 101  Q
    |    
T  22627556 t 22627556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 16461892 - 16461991
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||   |||| ||| || ||||||||||||||||||||||||||||||||||||||||    
T  16461892 gccacgatggagaagcatcgcgccacgattgttgaagcaagattcctgggaaactactggaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 16461991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 54188198 - 54188298
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |    |||||||||||||||||||||||||||||||||||    
T  54188198 gccacgatggagaagcatcgcgccacgattgttgaagcaagatcctgaggaagctactggatttttcgtgccacgatgaagccgcatcgtgccacgatgg 54188297  T
Q  101 t 101  Q
    |    
T  54188298 t 54188298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 5858236 - 5858336
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||  |||||||||||||   |||||||||||||||||||    
T  5858236 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgagggagctactggaaatttcgtgccacgatggccccgcatcgtgccacgatgg 5858335  T
Q  101 t 101  Q
    |    
T  5858336 t 5858336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 10896694 - 10896794
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    ||||||||||||||||||||||||||||||| ||||||| | |||  ||||||||| || |||  |||||||||||||||||||||||||||||||||||    
T  10896694 gccacgatggagaagcatcgcgccacgattgctgaagcatggttcctaggaagctactggaaatttcgtgccacgatgaagccgcatcgtgccacgatgg 10896793  T
Q  101 t 101  Q
    |    
T  10896794 t 10896794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 29914445 - 29914345
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||   |||||||| || |||  |||||||||||||   |||||||||||||||||||    
T  29914445 gccacgatggagaagcatcgcgccacgattgttgaagcaagattcctgggaagctactggaaatttcgtgccacgatggctccgcatcgtgccacgatgg 29914346  T
Q  101 t 101  Q
    |    
T  29914345 t 29914345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 29963598 - 29963498
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||   |||||||| || |||  |||||||||||||   |||||||||||||||||||    
T  29963598 gccacgatggagaagcatcgcgccacgattgttgaagcaagattcctgggaagctactggaaatttcgtgccacgatggctccgcatcgtgccacgatgg 29963499  T
Q  101 t 101  Q
    |    
T  29963498 t 29963498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 5858405 - 5858462
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5858405 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 5858462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 47878494 - 47878437
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47878494 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 47878437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 54193084 - 54193141
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54193084 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 54193141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 10595502 - 10595425
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatg 78  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| || |||  |||||||||||||    
T  10595502 gccacgatggagaaacattgcgccacgattgttgaagcaagattctgaggaagctactggaaatttcgtgccacgatg 10595425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 48390543 - 48390486
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  48390543 cactataaatataagcctcgtatcagatgataaagtgtgtagaaaaacagggtttaga 48390486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 54188367 - 54188424
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  54188367 cactataaatataagccttgtatcaggtgataaagtgtgtagaaaaacagggtttaga 54188424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 20031636 - 20031580
Alignment:
Q  172 actataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  20031636 actataaatataagtcttgtatcagatgataaagtgtgtagaaaaacagggtttaga 20031580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 6303015 - 6303102
Alignment:
Q  14 agcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatggt 101  Q
    |||||||||||||||| |||||||||||||||   |||||||| || |||||||||||||||||||||| |  |||||||||||||||    
T  6303015 agcatcgcgccacgatggttgaagcaagattcctgggaagctactggaaaaatcgtgccacgatgaagcagggtcgtgccacgatggt 6303102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 10613270 - 10613171
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||||||||||| || |||  || ||||||||||   |  ||||||||||||||||    
T  10613270 gccacgatggagaaacatcgcaccacgattgttgaagcaagattctgaggaagctactggaaatttcatgccacgatggcccgacatcgtgccacgatgg 10613171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 4535473 - 4535530
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4535473 cactataattataagtcttgtatcagatgataaagtgtgtagaaaaacagggtttaga 4535530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 10613101 - 10613044
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  10613101 cactataaatataagccttgtatcatatgataaagtgtgtagaaaaatagggtttaga 10613044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 10949581 - 10949525
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10949581 cactataaatataagccttgtatcagatgataaagtgtgtag-aaaacagggtttaga 10949525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 47878642 - 47878565
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatg 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||   |||||||| || |||  |||||||||||||    
T  47878642 gccacgatggagaagcatcgcgccacgattgttgaagcaagattcctgggaagctactggaaatttcgtgccacgatg 47878565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 101
Target Start/End: Complemental strand, 10094558 - 10094459
Alignment:
Q  2 ccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatggt 101  Q
    ||||||||||||||||||||| |||||| |||||||||||||||   |||||  | || |||  |||||||||||||||| | |||||||||||||||||    
T  10094558 ccacgatggagaagcatcgcgtcacgatggttgaagcaagattcctgggaagacactggaaatttcgtgccacgatgaagactcatcgtgccacgatggt 10094459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 54192936 - 54192991
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagcta 56  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  54192936 gccacgatggagaagcatcgcgccacgattgttgaagcaagatcctaaggaagcta 54192991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 10208491 - 10208391
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaaga-ttctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatg 99  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||| |||||  | || |||  |||||||||||||||| | ||||| |||||||||    
T  10208491 gccacgatggagaagcatcgcgccacgatggttgaagcaagatttctg-ggaagacactggaaatttcgtgccacgatgaagactcatcgcgccacgatg 10208393  T
Q  100 gt 101  Q
    ||    
T  10208392 gt 10208391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 22626306 - 22626250
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  22626306 cactataaataca-gccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 22626250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 47883204 - 47883159
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  47883204 cactataaatataagccttgtatcagatgataaagtgtgtagaaaa 47883159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 27543980 - 27544064
Alignment:
Q  17 atcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatggt 101  Q
    |||| |||||||| |||||||||||||||   |||||||| || |||||||||||||||||||||| |  |||||||||||||||    
T  27543980 atcgtgccacgatggttgaagcaagattcctgggaagctactggaaaaatcgtgccacgatgaagcagggtcgtgccacgatggt 27544064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 9605108 - 9604998
Alignment:
Q  4 acgatggagaagcatcgcgccacgattgttgaagcaagattctg-aggaagctattgaaaaaatcgtgccacga-tgaagccgcatcgtgccacgatggt 101  Q
    ||||||||||||  ||| ||||||||||||||||||| |||||| || || |  | |||||||||||||||||| |||| | |||||||| |||||||||    
T  9605108 acgatggagaagtttcgtgccacgattgttgaagcaaaattctggagcaatcactggaaaaaatcgtgccacgactgaatc-gcatcgtggcacgatggt 9605010  T
Q  102 gcgattgaagat 113  Q
    ||||||||||||    
T  9605009 gcgattgaagat 9604998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 10100582 - 10100484
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaaga-ttctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatg 99  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||| |||||  | || |||  |||||||||||||||| | ||||| |||||||||    
T  10100582 gccacgatggagaagcatcgcgccacgatggttgaagcaagatttctg-ggaagacactggaaatttcgtgccacgatgaagactcatcgcgccacgatg 10100484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 101
Target Start/End: Complemental strand, 10201444 - 10201345
Alignment:
Q  2 ccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatggt 101  Q
    |||||||||||||||||||||||||||| |||||||||||||||   |||||  | || |||  ||||||||| |||||| | ||||| |||||||||||    
T  10201444 ccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactggaaatttcgtgccacaatgaagactcatcgcgccacgatggt 10201345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 4308779 - 4308667
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattct-gaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatg 99  Q
    ||||||||| |||||| ||| ||||||||||||||||||| ||||| ||| || | | || |||||||||||||||||     || ||||||||||||||    
T  4308779 gccacgatgaagaagcttcgtgccacgattgttgaagcaaaattctagagcaatc-actggaaaaatcgtgccacgattggatcgaatcgtgccacgatg 4308681  T
Q  100 gtgcgattgaagat 113  Q
    ||||||||||||||    
T  4308680 gtgcgattgaagat 4308667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 10896864 - 10896921
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    ||||||||| | ||| ||||||||||||||||||||||||||||||| ||||||||||    
T  10896864 cactataaagacaagtcttgtatcagatgataaagtgtgtagaaaaatagggtttaga 10896921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 51727504 - 51727392
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattct-gaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatg 99  Q
    |||||||||||||||| ||| ||||||||||||||||||| ||||| ||| || | | || |||||||||||||||||     || ||||||||||||||    
T  51727504 gccacgatggagaagcttcgtgccacgattgttgaagcaaaattctggagcaatc-actggaaaaatcgtgccacgatttgatcgaatcgtgccacgatg 51727406  T
Q  100 gtgcgattgaagat 113  Q
    ||| ||||||||||    
T  51727405 gtgtgattgaagat 51727392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 11079377 - 11079417
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgta 211  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  11079377 cactataaatataagccttgtatcagatgataaagtgtgta 11079417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 27762307 - 27762252
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    |||||||||||| || ||||||||||||||||||||||||||  ||||||||||||||    
T  27762307 cactataaatattagtcttgtatcagatgataaagtgtgtag--aaacagggtttaga 27762252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 29914276 - 29914219
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||    
T  29914276 cactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacagggtttaga 29914219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 48390710 - 48390634
Alignment:
Q  3 cacgatggagaagcatcgcgccacgattgttgaagcaagattct-gaggaagctattgaaaaaatcgtgccacgatg 78  Q
    ||||||||||||||| || ||||| ||||||||||||||||||| |||||||  | || ||||||||||| ||||||    
T  48390710 cacgatggagaagcaacgtgccacaattgttgaagcaagattctggaggaagtcactggaaaaatcgtgctacgatg 48390634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 20031843 - 20031764
Alignment:
Q  1 gccacgatggagaa-gcatcgcgccacgattgttgaagcaagattctg-aggaagctattgaaaaaatcgtgccacgatg 78  Q
    |||||||||||||| |||  | |||||||||||||||||||||||||| ||||||  | || ||||||||||||||||||    
T  20031843 gccacgatggagaaagcaatgtgccacgattgttgaagcaagattctgaaggaagtcactggaaaaatcgtgccacgatg 20031764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 4535303 - 4535349
Alignment:
Q  3 cacgatggagaagcatcgcgccacgattgttgaagcaagattctgag 49  Q
    ||||||||||||||| || ||||||||||||||| ||||||||||||    
T  4535303 cacgatggagaagcaacgtgccacgattgttgaaacaagattctgag 4535349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 6303171 - 6303228
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||    
T  6303171 cactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttaga 6303228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 10094395 - 10094338
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||    
T  10094395 cactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttaga 10094338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 10201275 - 10201218
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||    
T  10201275 cactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttaga 10201218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 10208321 - 10208264
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||    
T  10208321 cactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttaga 10208264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 16462062 - 16462119
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||    
T  16462062 cactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttaga 16462119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 35918447 - 35918401
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctg 47  Q
    |||||||||||||||| ||| ||||||||||||||||||| ||||||    
T  35918447 gccacgatggagaagcttcgtgccacgattgttgaagcaaaattctg 35918401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 10100400 - 10100355
Alignment:
Q  184 agccttgtatcagatgataaa-gtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||    
T  10100400 agccttgtatcagatgataaaagtgtgtagaaaaacaaggtttaga 10100355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 25690854 - 25690742
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattct-gaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatg 99  Q
    |||||||||||||||| ||| |||||||||||||||| || ||||| ||| || | | || ||||||||||||| |||     || || |||||||||||    
T  25690854 gccacgatggagaagcttcgtgccacgattgttgaagaaaaattctggagcaatc-actggaaaaatcgtgccatgattggatcgaattgtgccacgatg 25690756  T
Q  100 gtgcgattgaagat 113  Q
    ||||||||||||||    
T  25690755 gtgcgattgaagat 25690742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 29956258 - 29956302
Alignment:
Q  3 cacgatggagaagcatcgcgccacgattgttgaagcaagattctg 47  Q
    |||||||||||||| ||| ||||||||||||||||||| ||||||    
T  29956258 cacgatggagaagcttcgtgccacgattgttgaagcaaaattctg 29956302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 30005413 - 30005457
Alignment:
Q  3 cacgatggagaagcatcgcgccacgattgttgaagcaagattctg 47  Q
    |||||||||||||| ||| ||||||||||||||||||| ||||||    
T  30005413 cacgatggagaagcttcgtgccacgattgttgaagcaaaattctg 30005457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 217
Target Start/End: Complemental strand, 10595354 - 10595310
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaa 217  Q
    ||||||||||||||| |||||||||||||||  ||||||||||||||    
T  10595354 cactataaatataagtcttgtatcagatgat--agtgtgtagaaaaa 10595310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 10949771 - 10949724
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctga 48  Q
    ||||||||||||||||| || ||||||||||||||| |||||| ||||    
T  10949771 gccacgatggagaagcaacgtgccacgattgttgaaacaagatcctga 10949724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 27762518 - 27762471
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctga 48  Q
    ||||||||||||||||| || ||||||||||||||| |||||| ||||    
T  27762518 gccacgatggagaagcaacgtgccacgattgttgaaacaagatcctga 27762471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 43225866 - 43225912
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctg 47  Q
    |||||||||||||||| ||| || |||||||||||||||| ||||||    
T  43225866 gccacgatggagaagcttcgtgctacgattgttgaagcaaaattctg 43225912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 200
Target Start/End: Original strand, 3329720 - 3329749
Alignment:
Q  171 cactataaatataagccttgtatcagatga 200  Q
    ||||||||||||||||||||||||||||||    
T  3329720 cactataaatataagccttgtatcagatga 3329749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 200
Target Start/End: Original strand, 7768505 - 7768533
Alignment:
Q  172 actataaatataagccttgtatcagatga 200  Q
    |||||||||||||||||||||||||||||    
T  7768505 actataaatataagccttgtatcagatga 7768533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 44513018 - 44512919
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||   |||||||||||||||||||||||||||||||||||    
T  44513018 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctactggaattttcgtgccacgatgaagccgcatcgtgccacgatgg 44512919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 25351044 - 25351143
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    |||||||||||||||||||| ||||||||||||| |||||||| |||||||||||| || ||   |||||||||||||||||||||||||||||||||||    
T  25351044 gccacgatggagaagcatcgtgccacgattgttggagcaagatcctgaggaagctactggaattttcgtgccacgatgaagccgcatcgtgccacgatgg 25351143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 25356738 - 25356837
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    |||||||||||||||||||| ||||||||||||| |||||||| |||||||||||| || ||   |||||||||||||||||||||||||||||||||||    
T  25356738 gccacgatggagaagcatcgtgccacgattgttggagcaagatcctgaggaagctactggaattttcgtgccacgatgaagccgcatcgtgccacgatgg 25356837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 7464990 - 7464913
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatg 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||  |||||||||||||    
T  7464990 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctactggaaatttcgtgccacgatg 7464913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 30246681 - 30246758
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatg 78  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||    
T  30246681 gccacgatggagaagcattgcgccacgattgttgaagcaagattctgaggaagctattggaaatttcgtgccacgatg 30246758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 8378910 - 8378833
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatg 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||  ||||| |||||||    
T  8378910 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctactggaaatttcgtggcacgatg 8378833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 3320540 - 3320440
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||   |||||| | || |||  |||||||||||||||||| ||||| ||||||||||    
T  3320540 gccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagccactggaaatttcgtgccacgatgaagcctcatcgcgccacgatgg 3320441  T
Q  101 t 101  Q
    |    
T  3320440 t 3320440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 34547332 - 34547257
Alignment:
Q  3 cacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatg 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||   |||||||||||||    
T  34547332 cacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctactggaattttcgtgccacgatg 34547257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 30246829 - 30246886
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  30246829 cactataaatataagccttgtatcagatgataaagtgtggagaaaaacagggtttaga 30246886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 34547186 - 34547129
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  34547186 cactataaatataagtcttgtatcagatgataaagtgtgtagaaaaacagggtttaga 34547129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 44512848 - 44512791
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  44512848 cactataaatataagccttgtataagatgataaagtgtgtagaaaaacagggtttaga 44512791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 3325288 - 3325188
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||   |||||| | || |||  |||||||||||||||||| ||||| ||||||||||    
T  3325288 gccacgatggagaagcatcgcaccacgatggttgaagcaagattcctgggaagccactggaaatttcgtgccacgatgaagcctcatcgcgccacgatgg 3325189  T
Q  101 t 101  Q
    |    
T  3325188 t 3325188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 25409990 - 25410046
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  25409990 cactataaatataagccttgtatcagatgataaagtgtgtag-aaaacagggtttaga 25410046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 7069472 - 7069572
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||   |||||  | || |||  |||||||||||||||| | ||||| ||||||||||    
T  7069472 gccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactggaaatttcgtgccacgatgaagactcatcgcgccacgatgg 7069571  T
Q  101 t 101  Q
    |    
T  7069572 t 7069572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 7464841 - 7464786
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggttta 226  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  7464841 cactataaatataagtcttgtataagatgataaagtgtgtagaaaaacagggttta 7464786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 25351213 - 25351269
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  25351213 cactataaatataagccttatatcagatgataaagtgtgtag-aaaacagggtttaga 25351269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 25356907 - 25356963
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  25356907 cactataaatataagccttatatcagatgataaagtgtgtag-aaaacagggtttaga 25356963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 25409842 - 25409919
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatg 78  Q
    |||||||||||||||||||||||||||||||||| || ||||| |||||||||||| || ||   |||||||||||||    
T  25409842 gccacgatggagaagcatcgcgccacgattgttggaggaagatcctgaggaagctactggaattttcgtgccacgatg 25409919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 7074479 - 7074579
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    |||||||||||||||||||| |||||||| |||||||||||||||   |||||  | || |||  |||||||||||||||| | ||||| ||||||||||    
T  7074479 gccacgatggagaagcatcgtgccacgatggttgaagcaagattcctgggaagacactggaaatttcgtgccacgatgaagactcatcgcgccacgatgg 7074578  T
Q  101 t 101  Q
    |    
T  7074579 t 7074579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 25405085 - 25405185
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||   |||||  | || |    |||||||||||||||||| ||||| ||||||||||    
T  25405085 gccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactggatttttcgtgccacgatgaagcctcatcgcgccacgatgg 25405184  T
Q  101 t 101  Q
    |    
T  25405185 t 25405185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 40946113 - 40946225
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattct-gaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatg 99  Q
    ||||||||| |||||| ||| ||||||||||||||||||| ||||| ||| || | | || |||||||||| ||||||     || ||||||||||||||    
T  40946113 gccacgatgaagaagcttcgtgccacgattgttgaagcaaaattctggagcaatc-actggaaaaatcgtgtcacgattggatcgaatcgtgccacgatg 40946211  T
Q  100 gtgcgattgaagat 113  Q
    ||||||||||||||    
T  40946212 gtgcgattgaagat 40946225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 44011073 - 44011017
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    |||||||||||||| |||||||||||||||| | |||||||| |||||||||||||||    
T  44011073 cactataaatataaaccttgtatcagatgattatgtgtgtag-aaaacagggtttaga 44011017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 44016984 - 44016928
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    |||||||||||||| |||||||||||||||| | |||||||| |||||||||||||||    
T  44016984 cactataaatataaaccttgtatcagatgattatgtgtgtag-aaaacagggtttaga 44016928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 44144188 - 44144143
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaa 216  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||    
T  44144188 cactataaatataagtcttgtatcagacgataaagtgtgtagaaaa 44144143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 3320359 - 3320313
Alignment:
Q  184 agccttgtatcagatgataaa-gtgtgtagaaaaacagggtttagat 229  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||    
T  3320359 agccttgtatcagatgataaaagtgtgtagaaaaacaaggtttagat 3320313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 3325107 - 3325061
Alignment:
Q  184 agccttgtatcagatgataaa-gtgtgtagaaaaacagggtttagat 229  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||    
T  3325107 agccttgtatcagatgataaaagtgtgtagaaaaacaaggtttagat 3325061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 7069641 - 7069698
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||    
T  7069641 cactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttaga 7069698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 7074648 - 7074705
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||    
T  7074648 cactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttaga 7074705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 8378827 - 8378770
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||    
T  8378827 cactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttaga 8378770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 25405254 - 25405311
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||    
T  25405254 cactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttaga 25405311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 15541304 - 15541259
Alignment:
Q  184 agccttgtatcagatgataaa-gtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||    
T  15541304 agccttgtatcagatgataaaagtgtgtagaaaaacaaggtttaga 15541259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 42006524 - 42006579
Alignment:
Q  172 actataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||||| || ||||| |||||| ||| |||||||||||||||||||||||    
T  42006524 actataaatataaaccgtgtataagatgaaaaa-tgtgtagaaaaacagggtttaga 42006579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 2120626 - 2120662
Alignment:
Q  17 atcgcgccacgattgttgaagcaagattctgaggaag 53  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  2120626 atcgcgccacgattggtgaagcaaaattctgaggaag 2120662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 38)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 17695343 - 17695244
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||   | |||||||||||||||||||||||||||||||||    
T  17695343 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctactggaatttttgtgccacgatgaagccgcatcgtgccacgatgg 17695244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 25466392 - 25466292
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||| || |||  ||||||||||||||||||||||| |||||||||||    
T  25466392 gccacgatggagaagcatcgtgccacaattgttgaagcaagattctaaggaagctactggaaatttcgtgccacgatgaagccgcatcatgccacgatgg 25466293  T
Q  101 t 101  Q
    |    
T  25466292 t 25466292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 13878419 - 13878519
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    |||| |||||||||||||||||||||||| |||||||||||||||   |||||||| || |||||||||||||||||||||| |  ||||||||||||||    
T  13878419 gccatgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagctactggaaaaatcgtgccacgatgaagcagggtcgtgccacgatgg 13878518  T
Q  101 t 101  Q
    |    
T  13878519 t 13878519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 17695174 - 17695117
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17695174 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 17695117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 25466222 - 25466165
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25466222 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 25466165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 30975189 - 30975089
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||   |||||  |||| |||  |||||||||||||||||| ||||| ||||||||||    
T  30975189 gccacgatggagaagcatcgcgccacgatggttgaagcaagattccttggaagacattggaaatttcgtgccacgatgaagcctcatcgcgccacgatgg 30975090  T
Q  101 t 101  Q
    |    
T  30975089 t 30975089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 30981628 - 30981528
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||   |||||  |||| |||  |||||||||||||||||| ||||| ||||||||||    
T  30981628 gccacgatggagaagcatcgcgccacgatggttgaagcaagattccttggaagacattggaaatttcgtgccacgatgaagcctcatcgcgccacgatgg 30981529  T
Q  101 t 101  Q
    |    
T  30981528 t 30981528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 30987792 - 30987692
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||   |||||  |||| |||  |||||||||||||||||| ||||| ||||||||||    
T  30987792 gccacgatggagaagcatcgcgccacgatggttgaagcaagattccttggaagacattggaaatttcgtgccacgatgaagcctcatcgcgccacgatgg 30987693  T
Q  101 t 101  Q
    |    
T  30987692 t 30987692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 13467786 - 13467729
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  13467786 cactataaatataagccttgtatcaaatgataaagtgtgtagaaaaacagggtttaga 13467729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 22352175 - 22352118
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  22352175 cactataaatataaaccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 22352118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 25941504 - 25941561
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  25941504 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacatggtttaga 25941561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 13883167 - 13883267
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||   |||||  | || |||  |||||||||||||||||| ||||| ||||||||||    
T  13883167 gccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactggaaatttcgtgccacgatgaagcctcatcgcgccacgatgg 13883266  T
Q  101 t 101  Q
    |    
T  13883267 t 13883267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 22343122 - 22343067
Alignment:
Q  173 ctataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  22343122 ctataaatataagccttgtatcatatgataaagtgtgtagaaaaacagggtttaga 22343067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 25941356 - 25941433
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatg 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||   |||||||| || |||  |||||||||||||    
T  25941356 gccacgatggagaagcatcgcgccacgattgttgaagcaagattcctgggaagctactggaaatttcgtgccacgatg 25941433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 26084764 - 26084876
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattct-gaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatg 99  Q
    |||||||||||||||| ||| ||||||||||||||||||| ||||| ||| || | | || |||||||||||||||||  |  ||||||||| |||||||    
T  26084764 gccacgatggagaagcttcgtgccacgattgttgaagcaaaattctggagcaatc-actggaaaaatcgtgccacgattgaatcgcatcgtggcacgatg 26084862  T
Q  100 gtgcgattgaagat 113  Q
    ||||||||||||||    
T  26084863 gtgcgattgaagat 26084876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 33215686 - 33215743
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  33215686 cactataaatataagccttgtgtcagatgataaagtgtgtagaaaaacagagtttaga 33215743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 26887715 - 26887615
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||   || ||  | || |||  |||||||||||||||||| ||||| ||||||||||    
T  26887715 gccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggcagacactggaaatttcgtgccacgatgaagcctcatcgcgccacgatgg 26887616  T
Q  101 t 101  Q
    |    
T  26887615 t 26887615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 31249204 - 31249104
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||   |||||  | || |||  |||||||||||||||| | ||||| ||||||||||    
T  31249204 gccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactggaaatttcgtgccacgatgaagactcatcgcgccacgatgg 31249105  T
Q  101 t 101  Q
    |    
T  31249104 t 31249104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 35201816 - 35201716
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||   |||||  | || |||  |||||||||||||||| | ||||| ||||||||||    
T  35201816 gccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactggaaatttcgtgccacgatgaagactcatcgcgccacgatgg 35201717  T
Q  101 t 101  Q
    |    
T  35201716 t 35201716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 16785611 - 16785711
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    |||||||| || ||||||||||||||||| |||||||||||||||   |||||  | || |||||| ||||||||||||||| |  ||||||||||||||    
T  16785611 gccacgatcgaaaagcatcgcgccacgatggttgaagcaagattcctgggaagacactggaaaaattgtgccacgatgaagcagggtcgtgccacgatgg 16785710  T
Q  101 t 101  Q
    |    
T  16785711 t 16785711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 187 - 226
Target Start/End: Complemental strand, 3577821 - 3577782
Alignment:
Q  187 cttgtatcagatgataaagtgtgtagaaaaacagggttta 226  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  3577821 cttgtatcagatgataaagtgtgtagaaaaacagggttta 3577782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 5166137 - 5166081
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||||||| ||||||||||||||| | |||||||| |||||||||||||||    
T  5166137 cactataaatataagtcttgtatcagatgattatgtgtgtag-aaaacagggtttaga 5166081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 22343296 - 22343184
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    |||||||||||||||| ||| ||||||||||||||||||| | ||||  | |   |||| |||||||||||||||||     |  ||||| |||||||||    
T  22343296 gccacgatggagaagcttcgtgccacgattgttgaagcaaaactctggagcattcattggaaaaatcgtgccacgattggatcaaatcgtaccacgatgg 22343197  T
Q  101 tgcgattgaagat 113  Q
    |||||||||||||    
T  22343196 tgcgattgaagat 22343184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 33215533 - 33215617
Alignment:
Q  17 atcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatggt 101  Q
    |||| |||||||||||||||| |||||||||| | ||  | || ||||||||||||||||||||  |||| |||| |||||||||    
T  33215533 atcgtgccacgattgttgaagaaagattctgaagcagtcactggaaaaatcgtgccacgatgaaatcgcaacgtggcacgatggt 33215617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 35209051 - 35209007
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattc 45  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||    
T  35209051 gccacaatggagaagcatcgcgccacgatggttgaagcaagattc 35209007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 13878588 - 13878645
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||    
T  13878588 cactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttaga 13878645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 13883336 - 13883393
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||    
T  13883336 cactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttaga 13883393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 26064795 - 26064841
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctg 47  Q
    |||||||||||||||| ||| ||||||||||||||||||| ||||||    
T  26064795 gccacgatggagaagcttcgtgccacgattgttgaagcaaaattctg 26064841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 30975020 - 30974963
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||    
T  30975020 cactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttaga 30974963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 30981459 - 30981402
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||    
T  30981459 cactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttaga 30981402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 30987623 - 30987566
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||    
T  30987623 cactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttaga 30987566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 31249035 - 31248978
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||    
T  31249035 cactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttaga 31248978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 35201647 - 35201590
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||    
T  35201647 cactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttaga 35201590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 35208882 - 35208825
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||    
T  35208882 cactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttaga 35208825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 1230728 - 1230683
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattct 46  Q
    |||||||||||||||| ||| ||||||||||||||||||| |||||    
T  1230728 gccacgatggagaagcttcgtgccacgattgttgaagcaaaattct 1230683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 13467996 - 13467955
Alignment:
Q  2 ccacgatggagaagcatcgcgccacgattgttgaagcaagat 43  Q
    |||||||||||||||| || ||||||||||||||||||||||    
T  13467996 ccacgatggagaagcaacgtgccacgattgttgaagcaagat 13467955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 16785780 - 16785837
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||| | |||||||| ||||||||||| ||||||||||||||| ||||||||    
T  16785780 cactataaataca-gccttgtagcagatgataaaagtgtgtagaaaaacaaggtttaga 16785837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 26887545 - 26887488
Alignment:
Q  171 cactataaatataagccttgtatcagatgat-aaagtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||| | ||||||||||||||||| |||| ||||||||||||| ||||||||    
T  26887545 cactataaataca-gccttgtatcagatgataaaagcgtgtagaaaaacaaggtttaga 26887488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 22717717 - 22717618
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||   |||| ||| || ||||||||||||||||||||||||||||||||||||||||    
T  22717717 gccacgatggagaagcatcgcgccacgattgttgaagcaagattcctgggaaactactggaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 22717618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 20055261 - 20055162
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||   || ||||||||||||||||||||||||||||||||    
T  20055261 gccacgatggagaagcatcgcaccacgattgttgaagcaagattctgaggaagctactggaattttcatgccacgatgaagccgcatcgtgccacgatgg 20055162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 20050515 - 20050416
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| || ||   ||||||||||||||||||||| |||||||||||||    
T  20050515 gccacgatggagaagcatcgtgccacgattgttgcagcaagattctgaggaagctactggaattttcgtgccacgatgaagccgcaacgtgccacgatgg 20050416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 33674897 - 33674797
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||   |||||||| || ||||||||||||||||||||||||  ||||||||||||||    
T  33674897 gccacgatggagaagtatcgcgccacgattgttgaagtaagattcctgggaagctactggaaaaatcgtgccacgatgaagccgtgtcgtgccacgatgg 33674798  T
Q  101 t 101  Q
    |    
T  33674797 t 33674797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 12781712 - 12781613
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||  ||||| ||||||||  | | |||||| ||||||||    
T  12781712 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctactggaaatttcgtggcacgatgaccctgtatcgtggcacgatgg 12781613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 22712839 - 22712782
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22712839 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 22712782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 27518112 - 27518035
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatg 78  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||  |||||||||||||    
T  27518112 gccacgatggagaagcatcgcgccacgatttttgaagcaagattctgaggaagctactggaaatttcgtgccacgatg 27518035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 30478705 - 30478782
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatg 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||  ||||| |||||||    
T  30478705 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctactggaaatttcgtggcacgatg 30478782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 35894584 - 35894527
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35894584 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 35894527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 20050345 - 20050288
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  20050345 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtataga 20050288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 20055088 - 20055031
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  20055088 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtataga 20055031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 30478853 - 30478910
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  30478853 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagagtttaga 30478910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 37171075 - 37171018
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  37171075 cactataaatataaaccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 37171018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 78
Target Start/End: Complemental strand, 35894729 - 35894655
Alignment:
Q  4 acgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatg 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||   |||||||||||||    
T  35894729 acgatggagaagcatcgcgccacgattgttgaagcaagattctgagggagctactggaattttcgtgccacgatg 35894655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 12781543 - 12781487
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  12781543 cactataaatataagccttgtatcagatgataaagtgtgtag-aaaacagggtttaga 12781487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 22712987 - 22712910
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatg 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||   |||||||| || |||  |||||||||||||    
T  22712987 gccacgatggagaagcatcgcgccacgattgttgaagcaagattcctgggaagctactggaaatttcgtgccacgatg 22712910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 45567101 - 45567201
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||   || ||  | || |||  |||||||||||||||||| ||||| ||||||||||    
T  45567101 gccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggcagacactggaaatttcgtgccacgatgaagcctcatcgcgccacgatgg 45567200  T
Q  101 t 101  Q
    |    
T  45567201 t 45567201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 38190857 - 38190913
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  38190857 cactataaatataagtcttgtatcagatgataaagtgtgtag-aaaacagggtttaga 38190913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 2735897 - 2735997
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||   |||||  | || |    |||||||||||||||||| ||||| ||||||||||    
T  2735897 gccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactggatttttcgtgccacgatgaagcctcatcgcgccacgatgg 2735996  T
Q  101 t 101  Q
    |    
T  2735997 t 2735997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 27517964 - 27517905
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagt--gtgtagaaaaacagggtttaga 228  Q
    ||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||    
T  27517964 cactataaatataagccttgtatcaaatgataaagtgtgtgtagaaaaacagggtttaga 27517905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 39679737 - 39679837
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||   ||||| || || |    |||||||||||||||||| ||| | ||||||||||    
T  39679737 gccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagatactggatttttcgtgccacgatgaagcctcattgcgccacgatgg 39679836  T
Q  101 t 101  Q
    |    
T  39679837 t 39679837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 2740633 - 2740678
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattct 46  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  2740633 gccacgatggagaagcatcgcgccacgatggttgaagcaagattct 2740678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 17943397 - 17943442
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaa 216  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||    
T  17943397 cactataaatataagccttgtatcagatgataaggtgtgtagaaaa 17943442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 39686675 - 39686719
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattc 45  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  39686675 gccacgatggagaagcatcgcgccacgatggttgaagcaagattc 39686719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 17943249 - 17943304
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagcta 56  Q
    ||||||||||||||||||||||||||||||||||||| |||||  ||||| |||||    
T  17943249 gccacgatggagaagcatcgcgccacgattgttgaagtaagatcatgaggcagcta 17943304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 17462127 - 17462171
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattc 45  Q
    ||||||||||||||||||||||||||||| | |||||||||||||    
T  17462127 gccacgatggagaagcatcgcgccacgatggatgaagcaagattc 17462171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 17932493 - 17932548
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggttta 226  Q
    ||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||    
T  17932493 cactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacagggttta 17932548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 37171244 - 37171140
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctg-aggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatg 99  Q
    ||||||||||||||||| || |||| |||||||||| |||||| ||| || |||  ||||||||| ||||||||||||| |  || | |||| |||||||    
T  37171244 gccacgatggagaagcaacgtgccatgattgttgaaacaagatcctgaagcaagtcattgaaaaattcgtgccacgatggaatcgtaacgtggcacgatg 37171145  T
Q  100 gtgcg 104  Q
    |||||    
T  37171144 gtgcg 37171140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 2736066 - 2736123
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||    
T  2736066 cactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttaga 2736123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 2740802 - 2740859
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||    
T  2740802 cactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttaga 2740859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 17462297 - 17462354
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||    
T  17462297 cactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttaga 17462354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 22717548 - 22717491
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||    
T  22717548 cactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttaga 22717491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 228
Target Start/End: Complemental strand, 33674713 - 33674671
Alignment:
Q  187 cttgtatcagatgataaa-gtgtgtagaaaaacagggtttaga 228  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  33674713 cttgtatcagatgataaaagtgtgtagaaaaacagggtttaga 33674671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 39686844 - 39686901
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||    
T  39686844 cactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttaga 39686901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 45567270 - 45567327
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||    
T  45567270 cactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttaga 45567327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 39679906 - 39679961
Alignment:
Q  171 cactataaatataagccttgtatcagatgat-aaagtgtgtagaaaaacagggttta 226  Q
    ||||||||||| | ||||||||||||||||| |||||||||||||||||| ||||||    
T  39679906 cactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggttta 39679961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 38190688 - 38190735
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctga 48  Q
    ||||||||||||||||| || ||||||||||||||| |||||| ||||    
T  38190688 gccacgatggagaagcaacgtgccacgattgttgaaacaagatcctga 38190735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 9021599 - 9021499
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||   |||||||||||||||||||||| ||||||||||||    
T  9021599 gccacgatggagaagcatcgcgtcacgattgttgaagcaagattctgaggaagctactggaattttcgtgccacgatgaagccgcattgtgccacgatgg 9021500  T
Q  101 t 101  Q
    |    
T  9021499 t 9021499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 29555275 - 29555178
Alignment:
Q  4 acgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatggt 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||  |||||||||||||   | ||||||||||||||||||    
T  29555275 acgatggagaagcatcgcgccacgattgttgaagcaagattctgagggagctattggaaatttcgtgccacgatggccctgcatcgtgccacgatggt 29555178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 28895192 - 28895292
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    ||||||||| |||||||||||||||||||||||||||||||||||   |||||||| || |||||||||||||||||||||| |   |||||||||||||    
T  28895192 gccacgatgtagaagcatcgcgccacgattgttgaagcaagattcctgggaagctactggaaaaatcgtgccacgatgaagcagtgccgtgccacgatgg 28895291  T
Q  101 t 101  Q
    |    
T  28895292 t 28895292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 9021430 - 9021373
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9021430 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 9021373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 21033729 - 21033786
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21033729 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 21033786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 16753013 - 16752913
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    |||||||| |||| ||||||||||||||| |||||||||||||||   |||||||| || |||||||||||||||||||||| |  ||||||||||||||    
T  16753013 gccacgatagagaggcatcgcgccacgatggttgaagcaagattcctgggaagctactggaaaaatcgtgccacgatgaagcagggtcgtgccacgatgg 16752914  T
Q  101 t 101  Q
    |    
T  16752913 t 16752913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 3276203 - 3276260
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  3276203 cactataaatataagccttgtattagatgataaagtgtgtagaaaaacagggtttaga 3276260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 29555108 - 29555051
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29555108 cactataaatataagcgttgtatcagatgataaagtgtgtagaaaaacagggtttaga 29555051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 4812979 - 4812879
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||   |||||  | || |||  |||||||||||||||||| ||||| ||||||||||    
T  4812979 gccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactggaaatttcgtgccacgatgaagcctcatcgcgccacgatgg 4812880  T
Q  101 t 101  Q
    |    
T  4812879 t 4812879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 25684335 - 25684435
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||   |||||  | || |||  |||||||||||||||| ||||||| ||||||||||    
T  25684335 gccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactggaaatttcgtgccacgatgaagacgcatcgcgccacgatgg 25684434  T
Q  101 t 101  Q
    |    
T  25684435 t 25684435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 590653 - 590710
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  590653 cactataaatctaagccttgtatcagatgataaagagtgtagaaaaacagggtttaga 590710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 16757737 - 16757660
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatg 78  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||   |||||||| || ||||||||||||||||||    
T  16757737 gccacgatggagaggcatcgcgccacgatggttgaagcaagattcctgggaagctactggaaaaatcgtgccacgatg 16757660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 21033559 - 21033671
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    ||||||||||||||||| || |||||||||||||||||||| || ||| | ||  | || |||||||||||||| ||  |  || |||||||||||||||    
T  21033559 gccacgatggagaagcaacgtgccacgattgttgaagcaagtttgtgaagcagtcactggaaaaatcgtgccacaattgaatcgaatcgtgccacgatgg 21033658  T
Q  101 tgcgattgaagat 113  Q
    |||||||||||||    
T  21033659 tgcgattgaagat 21033671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 590505 - 590582
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatg 78  Q
    ||||||||  |||||||||||||||||||||||||||||||||||   |||||||| || |||  |||||||||||||    
T  590505 gccacgataaagaagcatcgcgccacgattgttgaagcaagattcctgggaagctactggaaatttcgtgccacgatg 590582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 28327600 - 28327700
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    ||||||||||||||||||||||||||||| | |||||||||||||   |||||  | || |    |||||||||||||||||| ||||| ||||||||||    
T  28327600 gccacgatggagaagcatcgcgccacgatggctgaagcaagattcctgggaagacactggatttttcgtgccacgatgaagcctcatcgcgccacgatgg 28327699  T
Q  101 t 101  Q
    |    
T  28327700 t 28327700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 28332323 - 28332423
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    ||||||||||||||||||||||||||||| | |||||||||||||   |||||  | || |    |||||||||||||||||| ||||| ||||||||||    
T  28332323 gccacgatggagaagcatcgcgccacgatggctgaagcaagattcctgggaagacactggatttttcgtgccacgatgaagcctcatcgcgccacgatgg 28332422  T
Q  101 t 101  Q
    |    
T  28332423 t 28332423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 3275991 - 3276069
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctg-aggaagctattgaaaaaatcgtgccacgatg 78  Q
    |||||||||||||||||  | |||||||||||||||||||||||||| ||||||  | |  ||||||||||||||||||    
T  3275991 gccacgatggagaagcaatgtgccacgattgttgaagcaagattctgaaggaagtcacttgaaaaatcgtgccacgatg 3276069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 22685166 - 22685054
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctg-aggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatg 99  Q
    ||||||||| |||||| ||| ||||||||||||||| ||| |||||| || || | | || |||||| ||||||||||  |  || ||||||||||||||    
T  22685166 gccacgatgaagaagcttcgtgccacgattgttgaaccaaaattctggagcaatc-actggaaaaattgtgccacgatcgaatcgaatcgtgccacgatg 22685068  T
Q  100 gtgcgattgaagat 113  Q
    ||||||||||||||    
T  22685067 gtgcgattgaagat 22685054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 4812808 - 4812751
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||    
T  4812808 cactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttaga 4812751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 25684504 - 25684561
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||| || ||||||||||||||||||| ||||||||||||||| ||||||||    
T  25684504 cactataaatacaa-ccttgtatcagatgataaaagtgtgtagaaaaacaaggtttaga 25684561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 28327769 - 28327826
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||    
T  28327769 cactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttaga 28327826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 28332492 - 28332549
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||    
T  28332492 cactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttaga 28332549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 15944733 - 15944789
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    ||||||| |||||| |||||||||| |||| ||||||||| |||||||||||||||||    
T  15944733 cactatagatataaaccttgtatcatatga-aaagtgtgtggaaaaacagggtttaga 15944789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 23179884 - 23179827
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||||||| |||||||||||||| ||   | ||||||||||||||||||||    
T  23179884 cactataaatataagtcttgtatcagatgaaaagaagagtagaaaaacagggtttaga 23179827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 15949394 - 15949448
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggttta 226  Q
    ||||||||||||||  |||||||||||||| ||||||||  |||||||||||||||    
T  15949394 cactataaatataaatcttgtatcagatga-aaagtgtgaggaaaaacagggttta 15949448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 23180049 - 23180003
Alignment:
Q  4 acgatggagaagcatcgcgccacgattgttgaagcaagattctgagg 50  Q
    ||||||||||||||||| || | |||||||||| |||||||||||||    
T  23180049 acgatggagaagcatcgtgctatgattgttgaaacaagattctgagg 23180003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 28895361 - 28895418
Alignment:
Q  171 cactataaatataagccttgtatcagatgat-aaagtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||| | ||||||||||||||||| |||| ||||||||||||| ||||||||    
T  28895361 cactataaataca-gccttgtatcagatgataaaagggtgtagaaaaacaaggtttaga 28895418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 2267346 - 2267301
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaa 216  Q
    |||||||||||||| |||||||||||||||  | ||||||||||||    
T  2267346 cactataaatataaaccttgtatcagatgaatatgtgtgtagaaaa 2267301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 17799764 - 17799720
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaa 215  Q
    |||||||||||||| |||| ||||||||||| | |||||||||||    
T  17799764 cactataaatataaaccttatatcagatgattatgtgtgtagaaa 17799720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 33032496 - 33032540
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaa 215  Q
    |||||||||||||| |||||||| ||||||| | |||||||||||    
T  33032496 cactataaatataaaccttgtattagatgattacgtgtgtagaaa 33032540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 5e-31; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 2298489 - 2298389
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||| ||| ||| ||||||  ||||||||||||||    
T  2298489 gccacgatggagaagcatcgcgccacgactgttgaagcaagattctgaggaagctactggaaaaatcgtaccatgataaagccgtgtcgtgccacgatgg 2298390  T
Q  101 t 101  Q
    |    
T  2298389 t 2298389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 25452185 - 25452285
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||||   |||||||| || |||  |||||||||||||||||||  ||||||||||||||    
T  25452185 gccacgatggagaagcatcgcgccacgattgatgaagcaagattcctgggaagctactggaaatttcgtgccacgatgaagccgtgtcgtgccacgatgg 25452284  T
Q  101 t 101  Q
    |    
T  25452285 t 25452285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 1240288 - 1240344
Alignment:
Q  172 actataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1240288 actataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 1240344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 42237993 - 42238101
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    ||||||||||||||||| || ||||||||||||||||||||||| ||| | ||  | || ||||||||||||||||||||  |||| |||| ||||||||    
T  42237993 gccacgatggagaagcaacgtgccacgattgttgaagcaagattttgaagcagtcactggaaaaatcgtgccacgatgaaatcgcaacgtggcacgatgg 42238092  T
Q  101 tgcgattga 109  Q
    |||||||||    
T  42238093 tgcgattga 42238101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 22672693 - 22672750
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  22672693 cactataaatagaagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 22672750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 40222622 - 40222679
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  40222622 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacaaggtttaga 40222679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 40222453 - 40222561
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||| | ||  |  | ||||||||||||||||||||  |||| |||| ||||||||    
T  40222453 gccacgatggagaagcaacgtgccacgattgttgaagcaagattctgaagcagtcacaggaaaaatcgtgccacgatgaaatcgcaacgtggcacgatgg 40222552  T
Q  101 tgcgattga 109  Q
    | |||||||    
T  40222553 tacgattga 40222561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 35385923 - 35385846
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatg 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||   |||||||| || |||  |||||||||||||    
T  35385923 gccacgatggagaagcatcgcgccacgattgttgaagcaagattcctgggaagctactggaaatttcgtgccacgatg 35385846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 35385775 - 35385718
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||    
T  35385775 cactataaatataagccttgtatcaaatgataaagtgtgtagaaaaacaaagtttaga 35385718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 42238163 - 42238219
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  42238163 cactataaatataaaccttgtatca-atgataaagtgtgtagaaaaacagggtttaga 42238219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 1170503 - 1170603
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    |||||||||||||||||||||||||| || | |||||||||||||   || ||  | ||||||  |||||||||||||||||| ||||| ||||||||||    
T  1170503 gccacgatggagaagcatcgcgccacaatggctgaagcaagattcctgggcagacactgaaaatttcgtgccacgatgaagcctcatcgcgccacgatgg 1170602  T
Q  101 t 101  Q
    |    
T  1170603 t 1170603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 1240117 - 1240229
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattct-gaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatg 99  Q
    |||||||||||||||| ||| ||||||||||||||||||| ||||| ||| || | | || |||||||||||||||||     || ||||||||||||||    
T  1240117 gccacgatggagaagcttcgtgccacgattgttgaagcaaaattctggagcaatc-actggaaaaatcgtgccacgattggatcgaatcgtgccacgatg 1240215  T
Q  100 gtgcgattgaagat 113  Q
    |||| |||||||||    
T  1240216 gtgcaattgaagat 1240229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 6747083 - 6747195
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattct-gaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatg 99  Q
    |||||||||||||||| ||| ||||||||||||||||||| ||||| ||| || | | || |||| ||||||||||||     || ||||||||||||||    
T  6747083 gccacgatggagaagcttcgtgccacgattgttgaagcaaaattctggagcaatc-actggaaaagtcgtgccacgattggatcgaatcgtgccacgatg 6747181  T
Q  100 gtgcgattgaagat 113  Q
    ||||||||||||||    
T  6747182 gtgcgattgaagat 6747195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 10529599 - 10529487
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattct-gaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatg 99  Q
    |||||||| ||||||| ||| ||||||||||||||||||| ||||| ||| || | | || ||||||||||||||||| |   || ||||||||||||||    
T  10529599 gccacgatcgagaagcttcgtgccacgattgttgaagcaaaattctagagcaatc-actggaaaaatcgtgccacgattagatcgaatcgtgccacgatg 10529501  T
Q  100 gtgcgattgaagat 113  Q
     |||||||||||||    
T  10529500 atgcgattgaagat 10529487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 17841572 - 17841516
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    |||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||    
T  17841572 cactataaatataagccttgtatcggatgataaagtgcgtag-aaaacagggtttaga 17841516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 22672543 - 22672620
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatg 78  Q
    ||||||||||| |||||| ||||||| ||||||||||||||||||||||| || || || |||  |||||||||||||    
T  22672543 gccacgatggaaaagcattgcgccacaattgttgaagcaagattctgagggagttactggaaatttcgtgccacgatg 22672620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 1170673 - 1170729
Alignment:
Q  172 actataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttaga 228  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||    
T  1170673 actataaatata-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttaga 1170729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 6744840 - 6744952
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattct-gaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatg 99  Q
    |||||||||||||| | ||| ||||||||||||||||||| ||||| ||| || | | || |||||||||||||||||     || ||||||| ||||||    
T  6744840 gccacgatggagaaacttcgtgccacgattgttgaagcaaaattctggagcaatc-actggaaaaatcgtgccacgattggatcgaatcgtgctacgatg 6744938  T
Q  100 gtgcgattgaagat 113  Q
    ||||||||||||||    
T  6744939 gtgcgattgaagat 6744952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 10627222 - 10627278
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    |||||||||||||||||||||||||||| || | |||||||| |||||||||||||||    
T  10627222 cactataaatataagccttgtatcagattattatgtgtgtag-aaaacagggtttaga 10627278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 45
Target Start/End: Original strand, 25445263 - 25445302
Alignment:
Q  6 gatggagaagcatcgcgccacgattgttgaagcaagattc 45  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  25445263 gatggagaagcatcgcgccacgattgatgaagcaagattc 25445302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 2298324 - 2298267
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||| | ||||||||||| |||||||| ||||||||||||||| ||||||||    
T  2298324 cactataaataca-gccttgtatcatatgataaaagtgtgtagaaaaacaaggtttaga 2298267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 4409836 - 4409882
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctg 47  Q
    ||||||||| |||||| ||| ||||||||||||||||||| ||||||    
T  4409836 gccacgatgaagaagcttcgtgccacgattgttgaagcaaaattctg 4409882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 25452354 - 25452411
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||| | ||||||||| |||||||||| ||||||||||||||| ||||||||    
T  25452354 cactataaataca-gccttgtattagatgataaaagtgtgtagaaaaacaaggtttaga 25452411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 26406795 - 26406739
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||| || |||||||||| |||| || |||||||| |||||||||||||||    
T  26406795 cactataaatagaaaccttgtatcatatgaaaatgtgtgtag-aaaacagggtttaga 26406739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 30832 - 30932
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||   |||||||| || |||||||||||||||||||||| |  ||||||||||||||    
T  30832 gccacgatggagaagcatcgcgccaggatggttgaagcaagattcctgggaagctactggaaaaatcgtgccacgatgaagcagggtcgtgccacgatgg 30931  T
Q  101 t 101  Q
    |    
T  30932 t 30932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 31002 - 31059
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||    
T  31002 cactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttaga 31059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 188565 - 188508
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  188565 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 188508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 78
Target Start/End: Complemental strand, 188711 - 188637
Alignment:
Q  4 acgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatg 78  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |  |||  |||||||||||||    
T  188711 acgatggagaagcatcgcgccacgattgttgaagcaagattatgaggaaactactagaaatttcgtgccacgatg 188637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 2232301 - 2232382
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagc 82  Q
    ||||||||||||||||||||||||||||| |||||||||||||||   |||||||| || ||||||||||||||||||||||    
T  2232301 gccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagctactggaaaaatcgtgccacgatgaagc 2232382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 9526325 - 9526382
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9526325 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 9526382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 21353669 - 21353612
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21353669 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 21353612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 21353818 - 21353741
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatg 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||   |||||||||||||    
T  21353818 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctactggaattttcgtgccacgatg 21353741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 9521406 - 9521506
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||   |||||||| || |||  |||||||||||||   ||||||||||||| |||||    
T  9521406 gccacgatggagaagcatcgcgccacgattgttgaagcaagattcctgggaagctactggaaatttcgtgccacgatggccccgcatcgtgccaagatgg 9521505  T
Q  101 t 101  Q
    |    
T  9521506 t 9521506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 9526156 - 9526256
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaaga-ttctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatg 99  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||| |||||  | || |||  |||||||||||||||||| ||||| |||||||||    
T  9526156 gccacgatggagaagcatcgcgccacgatggttgaagcaagatttctg-ggaagacactggaaatttcgtgccacgatgaagcctcatcgcgccacgatg 9526254  T
Q  100 gt 101  Q
    ||    
T  9526255 gt 9526256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 25133931 - 25133987
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||    
T  25133931 cactataaatataagtcttgtatcagatgataaaatgtgtag-aaaacagggtttaga 25133987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 2393773 - 2393728
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattct 46  Q
    |||||||||||||||| || ||||||||||||||||||||||||||    
T  2393773 gccacgatggagaagcttcacgccacgattgttgaagcaagattct 2393728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 25133722 - 25133798
Alignment:
Q  3 cacgatggagaagcatcgcgccacgattgttgaagcaagattct-gaggaagctattgaaaaaatcgtgccacgatg 78  Q
    ||||||||||||||| || |||||||||||||||||||||| ||  || |||  |||| ||||||||||||||||||    
T  25133722 cacgatggagaagcaacgtgccacgattgttgaagcaagatcctaaagcaagtcattggaaaaatcgtgccacgatg 25133798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 2232458 - 2232515
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||    
T  2232458 cactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttaga 2232515  T

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Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 9521574 - 9521631
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||    
T  9521574 cactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttaga 9521631  T

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Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 2401687 - 2401642
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattct 46  Q
    |||||||||||||||| |  ||||||||||||||||||||||||||    
T  2401687 gccacgatggagaagcttttcgccacgattgttgaagcaagattct 2401642  T

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Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 23689345 - 23689313
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgtt 33  Q
    |||||||||||||||||||||||||||||||||    
T  23689345 gccacgatggagaagcatcgcgccacgattgtt 23689313  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 2617319 - 2617365
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctg 47  Q
    |||||||||||||||  ||| ||||||||||||||||||| ||||||    
T  2617319 gccacgatggagaagtttcgtgccacgattgttgaagcaaaattctg 2617365  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 200
Target Start/End: Complemental strand, 2393604 - 2393575
Alignment:
Q  171 cactataaatataagccttgtatcagatga 200  Q
    ||||||||||||||||||||||||||||||    
T  2393604 cactataaatataagccttgtatcagatga 2393575  T

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Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 200
Target Start/End: Complemental strand, 2401518 - 2401489
Alignment:
Q  171 cactataaatataagccttgtatcagatga 200  Q
    ||||||||||||||||||||||||||||||    
T  2401518 cactataaatataagccttgtatcagatga 2401489  T

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Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 3091428 - 3091373
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    |||||||||||||| |||||||||||||||  | |||||||| |||||||||||||||    
T  3091428 cactataaatataa-ccttgtatcagatgaatatgtgtgtag-aaaacagggtttaga 3091373  T

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Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 4145023 - 4144979
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaa 215  Q
    |||||||||||||| |||||||||||||||| | || ||||||||    
T  4145023 cactataaatataaaccttgtatcagatgattatgtatgtagaaa 4144979  T

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Target: scaffold0209 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 17309 - 17252
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  17309 cactataaatataagccttgtatcagatgataaagagtgtagaaaaacagggtttaga 17252  T

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Target: scaffold0209; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 17457 - 17380
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatg 78  Q
    |||||||| ||||||||||||||||||||||||||||||||||||   |||||||| || |||  |||||||||||||    
T  17457 gccacgatagagaagcatcgcgccacgattgttgaagcaagattcctgggaagctactggaaatttcgtgccacgatg 17380  T

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Target: scaffold0256 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 16015 - 16115
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatgaagccgcatcgtgccacgatgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||   |||||||| |  |||  |||||||||||||   |||||||||||||||||||    
T  16015 gccacgatggagaagcatcgcgccacgattgttgaagcaagcttcctgggaagctactagaaatttcgtgccacgatggccccgcatcgtgccacgatgg 16114  T
Q  101 t 101  Q
    |    
T  16115 t 16115  T

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Target: scaffold0256; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 16184 - 16241
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||    
T  16184 cactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacagggtttaga 16241  T

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Target: scaffold1764 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold1764
Description:

Target: scaffold1764; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 1147 - 1224
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctattgaaaaaatcgtgccacgatg 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||||||| || |||  | |||||||||||    
T  1147 gccacgatggagaagcatcgcgccacgattgttgaagcaagattcttgggaagctactggaaattttgtgccacgatg 1224  T

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Target: scaffold1764; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 1307 - 1352
Alignment:
Q  184 agccttgtatcagatgataaa-gtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||    
T  1307 agccttgtatcagatgataaaagtgtgtagaaaaacaaggtttaga 1352  T

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Target: scaffold0006 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 224532 - 224576
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattc 45  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  224532 gccacgatggagaagcatcgcgccacgatggttgaagcaagattc 224576  T

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Target: scaffold0006; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 224680 - 224737
Alignment:
Q  171 cactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttaga 228  Q
    ||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||    
T  224680 cactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttaga 224737  T

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Target: scaffold0552 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 1310 - 1264
Alignment:
Q  1 gccacgatggagaagcatcgcgccacgattgttgaagcaagattctg 47  Q
    ||||||||| |||||| ||| ||||||||||||||||||| ||||||    
T  1310 gccacgatgtagaagcttcgtgccacgattgttgaagcaaaattctg 1264  T

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