View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1114_low_1 (Length: 1137)
Name: NF1114_low_1
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 845; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 845; E-Value: 0
Query Start/End: Original strand, 104 - 1049
Target Start/End: Original strand, 28100391 - 28101336
Alignment:
| Q |
104 |
attttcatctcaaatgtgattcatttgttttaccagacatgacccactagatgttgttaatactcagttatctgcaaagcataatgcaaactttcaattt |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28100391 |
attttcatctcaaatgtgattcatttgttttaccagacatgacccactagatgttgttaatactcagttatctgcaaagcataatgcaaactttcaattt |
28100490 |
T |
|
| Q |
204 |
tatctataactcactttataataagtaagcgtagttaactattcattagtctataatatcacactatcaacagtacgcacctcaggttcaacaatgtcga |
303 |
Q |
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||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28100491 |
tatctataactaactttatcataaataagcgtagttaactattcattagtctataatatcacactatcaacagtacgcacctcaggttcaacaatgtcga |
28100590 |
T |
|
| Q |
304 |
attcaacagtgttcgatttcaaatcaactataagttgaatcataagtcataactacacacatcacaaacaaaaccaaaaacaataaattaaagcataatt |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28100591 |
attcaacagtgttcgatttcaaatcaactataagttgaatcataagtcataactacacacatcacaaacaaaaccaaaaacaataaattaaagcataatt |
28100690 |
T |
|
| Q |
404 |
acttacacataagattttgaatagatcataagataagttctgatcgcgtatcagatgctaagtttcacaatacaacttcnnnnnnngaatccaaaaaggg |
503 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
28100691 |
acttacacataagattttgaatagatcataagataagttctgatcgcgtatcagatgctaagtctcacaatacaacttcaaaaaaagaatccaaaaaggg |
28100790 |
T |
|
| Q |
504 |
ctagagttcgtcgttcttgctagtcaaaaaaggaatccaaagagggctagagattgttgttcttgctagaaaaatttactattgtgactgtatggttaat |
603 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
28100791 |
ctagagtttgtcgttcttgctagtcaaaaaaggaatccaaagggggctagagattgtcgttcttgctagaaaaatttactattgtgactgtatggtcaat |
28100890 |
T |
|
| Q |
604 |
ttggagagctagaaacggcagtttgttcaataatagggtacttttagtacaagaagtggttgagaaaattaaggtgttcgtggcgttggttccctggtcg |
703 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
28100891 |
ttggagagctagaaacggcagtttgttcaataatagggtacttttagtacaagaagtggttgagaaaattaaggtgttcgtggcgttggttccttggtcg |
28100990 |
T |
|
| Q |
704 |
aggagtttggtttccatgtatgaattacaaatggatgttgtatcctcaaaggtgtatggtcaactaatttatctcacttttcaatgtggcgaggggttga |
803 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
28100991 |
aggagtttggtttccatgtatgtattacaaatggatgttgtatcctcaaaggtgtatggtcaactaatttatctcacttttcaatgtggcgagggggtga |
28101090 |
T |
|
| Q |
804 |
gttctttgggatgctgcgatttgttgagtttgtttctgtcatggtctaattccttaattgattctcggtagtagttctatgtggcttttagcgatgtttc |
903 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
28101091 |
gttctttgggatgctgcgatttgttgagtttgtttctgtcatggtctaattccttaattgcttctcggtagtagttctatgtggtttttagcgatgtttc |
28101190 |
T |
|
| Q |
904 |
aaaattgtgaggtacggaggctgctgcttggttgttcttctagcctatgatgtgtttctgttttgctctagagtaatctggttttttggcctgcagtttg |
1003 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
28101191 |
aaaattgtgaggtacggaggctgctgcttggttgttcttctagcccatgttgtgtttctgttttgctctagagtaatctggttggttcgcctgcagtttg |
28101290 |
T |
|
| Q |
1004 |
tttctaccgtctcctgcaacagtttgtattattcgagtctgtggtg |
1049 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
28101291 |
tttctgccgtctcctgcaactgtttgtattattcgagtctgtggtg |
28101336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 4e-84
Query Start/End: Original strand, 551 - 1049
Target Start/End: Original strand, 28103582 - 28104095
Alignment:
| Q |
551 |
tagagattgttgttcttgctagaaaaatttactattgtgactgtatggttaatttggagagctagaaacggcagtttgttcaataa-----tagggtact |
645 |
Q |
| |
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||||||| || |||||||||| |||||||||||| ||| |||||||||| ||||||||||||||| |||| | ||||||||||| | ||||||||| |
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| T |
28103582 |
tagagatcgtcgttcttgctaaaaaaatttactactgtaactgtatggtcaatttggagagctaggaacgaccgtttgttcaatgaattgatagggtact |
28103681 |
T |
|
| Q |
646 |
tttagtacaagaagtggttgagaaaattaaggtgttcgtggcgttggttccctggtcgaggagtttggtttccatgtatgaattacaaatggatgttgta |
745 |
Q |
| |
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|| |||||||||||| |||||||||||||||||||||||| | ||||||| ||| | |||||||| |||||||||||| |||||||| || ||| | | |
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| T |
28103682 |
ttcggtacaagaagtgtttgagaaaattaaggtgttcgtggtggtggttccttggccaaggagtttcgtttccatgtatttattacaaaggggtgtggga |
28103781 |
T |
|
| Q |
746 |
tcctcaaaggtgtatggtcaactaatttatctcacttttcaatgtggcg-aggggt--tgagttctttggga----tgctgcgatttg--ttgagtttgt |
836 |
Q |
| |
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|||||||||||| |||||||||||| ||||||| |||||| ||||| | |||||| ||| || ||||||| |||||| || || |||||||||| |
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| T |
28103782 |
tcctcaaaggtgcatggtcaactaagttatctcgcttttcggtgtggtgaaggggtggtgaattttttgggaggtctgctgcaatctgttttgagtttgt |
28103881 |
T |
|
| Q |
837 |
ttctgtcatggtctaattccttaattgattctcggtagtagttctatgtggcttttagcgatgtttcaaaattgtgaggtacggaggctgctgcttggtt |
936 |
Q |
| |
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|||||||| || || ||| || | | ||||||||||||||||||||||| ||||||| ||||||| ||||||||||| ||||||||| ||||||||| |
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| T |
28103882 |
ttctgtcaagggctgcttctttgaccggttctcggtagtagttctatgtggattttagcattgtttcagaattgtgaggtgcggaggctgatgcttggtt |
28103981 |
T |
|
| Q |
937 |
gttcttctagcctatg-atgtgtttctgttttgctctagagtaatctggttttttggcctgcagtttgtttctaccgtctcctgcaacagtttgtattat |
1035 |
Q |
| |
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||||||||||||||| |||| |||||| |||| ||| ||||||||| || |||||||||||||| | || ||| ||||| |||||||| |||| |
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| T |
28103982 |
attcttctagcctatgtccacgtttatgttttactcttgagaaatctggttggttcacctgcagtttgttttttccatctgctgcatcagtttgtgttat |
28104081 |
T |
|
| Q |
1036 |
tcgagtctgtggtg |
1049 |
Q |
| |
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||||||| |||||| |
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| T |
28104082 |
tcgagtcagtggtg |
28104095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 906 - 1049
Target Start/End: Original strand, 26640877 - 26641021
Alignment:
| Q |
906 |
aattgtgaggtacggaggctgctgcttggttgttcttctagcctatgat-gtgtttctgttttgctctagagtaatctggttttttggcctgcagtttgt |
1004 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||| || | |||| |||||| |||| ||||||||||||| || ||||||||||||| |
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| T |
26640877 |
aattgtgaggcacagaggctgctgcttggttgttcttctagcctgtgtccgcgtttatgtttttctctggagtaatctggttggttcgcctgcagtttgt |
26640976 |
T |
|
| Q |
1005 |
ttctaccgtctcctgcaacagtttgtattattcgagtctgtggtg |
1049 |
Q |
| |
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|||| || ||| ||||| |||||||||||||| ||||| |||||| |
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| T |
26640977 |
ttcttccatctgctgcatcagtttgtattatttgagtcagtggtg |
26641021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 280 - 348
Target Start/End: Complemental strand, 33781160 - 33781092
Alignment:
| Q |
280 |
gcacctcaggttcaacaatgtcgaattcaacagtgttcgatttcaaatcaactataagttgaatcataa |
348 |
Q |
| |
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||||||||| ||||||||| || | |||| || ||||||||||||||||||| | | |||||||||||| |
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|
| T |
33781160 |
gcacctcagtttcaacaatatcaagttcatcaatgttcgatttcaaatcaacaagaggttgaatcataa |
33781092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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