View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1114_low_109 (Length: 286)

Name: NF1114_low_109
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1114_low_109
NF1114_low_109
[»] chr8 (6 HSPs)
chr8 (97-277)||(43731528-43731710)
chr8 (151-230)||(43748330-43748409)
chr8 (151-230)||(9944023-9944102)
chr8 (151-223)||(18364532-18364604)
chr8 (151-223)||(35929245-35929317)
chr8 (151-222)||(27547174-27547245)
[»] chr2 (4 HSPs)
chr2 (151-239)||(27282663-27282751)
chr2 (151-223)||(36047048-36047120)
chr2 (151-223)||(36048279-36048351)
chr2 (151-230)||(44206812-44206891)
[»] chr5 (4 HSPs)
chr5 (151-230)||(20190346-20190425)
chr5 (151-230)||(32684976-32685055)
chr5 (151-230)||(8880736-8880815)
chr5 (151-225)||(20200374-20200448)
[»] chr3 (10 HSPs)
chr3 (151-225)||(31604694-31604768)
chr3 (151-230)||(27481708-27481787)
chr3 (151-224)||(39623993-39624066)
chr3 (151-224)||(41665431-41665504)
chr3 (151-223)||(48394383-48394455)
chr3 (151-222)||(52044101-52044172)
chr3 (151-224)||(39918624-39918697)
chr3 (151-224)||(47667108-47667181)
chr3 (151-224)||(48402436-48402509)
chr3 (160-207)||(48413993-48414040)
[»] chr7 (7 HSPs)
chr7 (151-224)||(28040454-28040527)
chr7 (151-224)||(33171122-33171195)
chr7 (151-224)||(44206096-44206169)
chr7 (151-238)||(31516545-31516632)
chr7 (151-224)||(23260674-23260747)
chr7 (151-223)||(39796752-39796824)
chr7 (151-222)||(38538910-38538981)
[»] chr1 (9 HSPs)
chr1 (151-224)||(5031736-5031809)
chr1 (151-224)||(17983258-17983331)
chr1 (151-224)||(20607548-20607621)
chr1 (151-223)||(5757798-5757870)
chr1 (151-222)||(3820306-3820377)
chr1 (151-222)||(41985251-41985322)
chr1 (151-224)||(20610819-20610892)
chr1 (151-219)||(6073242-6073310)
chr1 (151-222)||(41987968-41988039)
[»] chr4 (1 HSPs)
chr4 (151-223)||(24267487-24267559)
[»] scaffold0012 (1 HSPs)
scaffold0012 (161-224)||(184931-184994)
[»] chr6 (1 HSPs)
chr6 (173-205)||(30899737-30899769)


Alignment Details
Target: chr8 (Bit Score: 114; Significance: 7e-58; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 97 - 277
Target Start/End: Original strand, 43731528 - 43731710
Alignment:
Q  97 cggaggaggaagaatcgatcgttttgctttgggtatatgggaagnnnnnnnnnn--cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcg 194  Q
    |||||||||||||||||||||||||||||||||||||||  ||             ||||||||||||||||||||||||||||||||||||||||||||    
T  43731528 cggaggaggaagaatcgatcgttttgctttgggtatatgaaaaaaaaaaaaaaaaacgccgctgccggggatcgaacccgggtcacccgcgtgacaggcg 43731627  T
Q  195 ggaatacttaccactatactacaacgactttttgatatcaattttcattcttctaacttgttattctgtacagcttcatctca 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||| |||||    
T  43731628 ggaatacttaccactatactacaacgactttttgatatcaattttcattcttctaacgacttattctgtacagcttcgtctca 43731710  T

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Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 151 - 230
Target Start/End: Original strand, 43748330 - 43748409
Alignment:
Q  151 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactttttgat 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43748330 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactttttgat 43748409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 151 - 230
Target Start/End: Original strand, 9944023 - 9944102
Alignment:
Q  151 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactttttgat 230  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  9944023 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgacttgttgat 9944102  T

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Target: chr8; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 151 - 223
Target Start/End: Complemental strand, 18364604 - 18364532
Alignment:
Q  151 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 223  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18364604 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 18364532  T

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Target: chr8; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 151 - 223
Target Start/End: Complemental strand, 35929317 - 35929245
Alignment:
Q  151 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 223  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35929317 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 35929245  T

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Target: chr8; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 151 - 222
Target Start/End: Complemental strand, 27547245 - 27547174
Alignment:
Q  151 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 222  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27547245 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 27547174  T

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Target: chr2 (Bit Score: 81; Significance: 4e-38; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 151 - 239
Target Start/End: Original strand, 27282663 - 27282751
Alignment:
Q  151 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactttttgatatcaatttt 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  27282663 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactttttgatgtctatttt 27282751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 151 - 223
Target Start/End: Complemental strand, 36047120 - 36047048
Alignment:
Q  151 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36047120 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 36047048  T

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Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 151 - 223
Target Start/End: Complemental strand, 36048351 - 36048279
Alignment:
Q  151 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36048351 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 36048279  T

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Target: chr2; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 151 - 230
Target Start/End: Complemental strand, 44206891 - 44206812
Alignment:
Q  151 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactttttgat 230  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  44206891 cgccgctgccggggatcgaatccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactgtttgat 44206812  T

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Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 151 - 230
Target Start/End: Original strand, 20190346 - 20190425
Alignment:
Q  151 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactttttgat 230  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  20190346 cgccgctgccggggatcgaacccgggtcacccacgtgacaggcgggaatacttaccactatactacaacgactttttgat 20190425  T

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Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 151 - 230
Target Start/End: Complemental strand, 32685055 - 32684976
Alignment:
Q  151 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactttttgat 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  32685055 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactctttgat 32684976  T

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Target: chr5; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 151 - 230
Target Start/End: Complemental strand, 8880815 - 8880736
Alignment:
Q  151 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactttttgat 230  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  8880815 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactatttgat 8880736  T

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Target: chr5; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 151 - 225
Target Start/End: Original strand, 20200374 - 20200448
Alignment:
Q  151 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgacttt 225  Q
    |||||||| |||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  20200374 cgccgctgtcggggatcaaacccgggtcacccgcatgacaggcaggaatacttaccactatactacaacgacttt 20200448  T

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Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 151 - 225
Target Start/End: Complemental strand, 31604768 - 31604694
Alignment:
Q  151 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgacttt 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31604768 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgacttt 31604694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 151 - 230
Target Start/End: Original strand, 27481708 - 27481787
Alignment:
Q  151 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactttttgat 230  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27481708 cgccgctgccggggatcgaacccggatcacccgcgtgacaggcgggaatacttaccactatactacaacgactgtttgat 27481787  T

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Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 39623993 - 39624066
Alignment:
Q  151 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 224  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39623993 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 39624066  T

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Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 41665431 - 41665504
Alignment:
Q  151 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 224  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41665431 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 41665504  T

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Target: chr3; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 151 - 223
Target Start/End: Original strand, 48394383 - 48394455
Alignment:
Q  151 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 223  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48394383 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 48394455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 151 - 222
Target Start/End: Complemental strand, 52044172 - 52044101
Alignment:
Q  151 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 222  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52044172 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 52044101  T

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Target: chr3; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 39918624 - 39918697
Alignment:
Q  151 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 224  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  39918624 cgccgttgccggggatcgaacccgggtcacccgtgtgacaggcgggaatacttaccactatactacaacaactt 39918697  T

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Target: chr3; HSP #8
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 47667108 - 47667181
Alignment:
Q  151 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 224  Q
    ||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  47667108 cgccgttgccggggatcgaacccgggtcacttgcgtgacaggcgggaatacttaccactatactacaacgactt 47667181  T

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Target: chr3; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 48402436 - 48402509
Alignment:
Q  151 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 224  Q
    ||||| |||| |||||| ||| | ||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  48402436 cgccgttgccagggatcaaactcaggtcacccgcgtgacagacgggaatacttaccactatactacaacaactt 48402509  T

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Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 207
Target Start/End: Original strand, 48413993 - 48414040
Alignment:
Q  160 cggggatcgaacccgggtcacccgcgtgacaggcgggaatacttacca 207  Q
    |||||||| |||||| ||||||||||||||| ||||||||||||||||    
T  48413993 cggggatcaaacccgagtcacccgcgtgacaagcgggaatacttacca 48414040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 28040454 - 28040527
Alignment:
Q  151 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28040454 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 28040527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 33171195 - 33171122
Alignment:
Q  151 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33171195 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 33171122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 44206169 - 44206096
Alignment:
Q  151 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44206169 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 44206096  T

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Target: chr7; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 151 - 238
Target Start/End: Complemental strand, 31516632 - 31516545
Alignment:
Q  151 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactttttgatatcaattt 238  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||    
T  31516632 cgccgctgccgaggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgacttggtgttatcaattt 31516545  T

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Target: chr7; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 23260747 - 23260674
Alignment:
Q  151 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 224  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23260747 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 23260674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 151 - 223
Target Start/End: Original strand, 39796752 - 39796824
Alignment:
Q  151 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 223  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39796752 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 39796824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 151 - 222
Target Start/End: Complemental strand, 38538981 - 38538910
Alignment:
Q  151 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 222  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38538981 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 38538910  T

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Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 5031809 - 5031736
Alignment:
Q  151 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5031809 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 5031736  T

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Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 17983331 - 17983258
Alignment:
Q  151 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17983331 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 17983258  T

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Target: chr1; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 20607621 - 20607548
Alignment:
Q  151 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20607621 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 20607548  T

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Target: chr1; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 151 - 223
Target Start/End: Complemental strand, 5757870 - 5757798
Alignment:
Q  151 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 223  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5757870 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 5757798  T

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Target: chr1; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 151 - 222
Target Start/End: Original strand, 3820306 - 3820377
Alignment:
Q  151 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 222  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3820306 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 3820377  T

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Target: chr1; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 151 - 222
Target Start/End: Complemental strand, 41985322 - 41985251
Alignment:
Q  151 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 222  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41985322 cgccgctgccggggattgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 41985251  T

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Target: chr1; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 20610892 - 20610819
Alignment:
Q  151 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 224  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||    
T  20610892 cgccgctgccggggatcgaacccgggtcacccgggtgacaagcgggaatacttaccactatactacaacaactt 20610819  T

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Target: chr1; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 6073242 - 6073310
Alignment:
Q  151 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 219  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6073242 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggtgggaatacttaccactatactacaac 6073310  T

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Target: chr1; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 151 - 222
Target Start/End: Complemental strand, 41988039 - 41987968
Alignment:
Q  151 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 222  Q
    ||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  41988039 cgccgctgccggggatcaaacctgggtcacccgggtgacaggcgggaatacttaccactatactacaacgac 41987968  T

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Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 151 - 223
Target Start/End: Original strand, 24267487 - 24267559
Alignment:
Q  151 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 223  Q
    ||||| ||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||    
T  24267487 cgccgttgccggggatcgaacccgggtcgtccgcgtgacaggcggaaatacttaccactatactacaacgact 24267559  T

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Target: scaffold0012 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 224
Target Start/End: Complemental strand, 184994 - 184931
Alignment:
Q  161 ggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 224  Q
    |||||| |||||||| |||||||| ||||||  || ||||||||||||||||||||||| ||||    
T  184994 ggggattgaacccggatcacccgcatgacagatggaaatacttaccactatactacaacaactt 184931  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 30899769 - 30899737
Alignment:
Q  173 cgggtcacccgcgtgacaggcgggaatacttac 205  Q
    |||||||||||||||||||||||||||||||||    
T  30899769 cgggtcacccgcgtgacaggcgggaatacttac 30899737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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