View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1114_low_11 (Length: 562)
Name: NF1114_low_11
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_low_11 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 453; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 13 - 533
Target Start/End: Complemental strand, 8531971 - 8531450
Alignment:
| Q |
13 |
aatatcatatgaaagatcagcacaataaccatagagacacaagatgacaggctgctgtttcggtggnnnnnnnaggatgacagtttggtttttctgtttt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
8531971 |
aatatcatatgaaagatcagcacaataaccatagagacacaagatgacaggctgctgtttcggtggttttttgaggatgacagtttggtttttctgtttt |
8531872 |
T |
|
| Q |
113 |
agccttctcttagtgctctgcagcattgcagctgttgtttgctggttgcattttttatgggtggctcctgtgcctttttt-ccttctgttttcgcttgct |
211 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8531871 |
agccttctgttagtgctctgcagcattgcagttgttgtttgctggttgcattttttatgggtggctcctgtgcctttttttccttctgttttcgcttgct |
8531772 |
T |
|
| Q |
212 |
tgctaccgttatgtaattcatggctttttgcacttcttgtgctaatccatctaacatcataaagacataatttagtcactgcttttgcaacattttaact |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
8531771 |
tgctaccgttatgtaattcatggctttttgcacttcttgtgctaagccatctaacatcataaagacataattcagtcactgcttttgcaacattttagct |
8531672 |
T |
|
| Q |
312 |
ttatcttgtattagaattttgatattttcatttggatggattgtcatgttatttggaaggattatcatttaatattataactagaaagacacaaattgat |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
8531671 |
ttatcttgtattagaattttgatattttcatttggatggattgtcatgttatttggaaggattattatttaatattataactggaaagacacaaattgat |
8531572 |
T |
|
| Q |
412 |
gtttttcaagtttcatatattgaaatgtatacataggcattgtcgaacttttccctcaatgctattcataatgattccctaacatacaatatcattgttg |
511 |
Q |
| |
|
||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8531571 |
gttcttcaagtttcatacattgaaatgtatacataggcattgtcgaacttttccctcaatgctattcataatgattccctaacatacagtatcattgttg |
8531472 |
T |
|
| Q |
512 |
aacaattcctactgcactttaa |
533 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
8531471 |
aacaattcctactgcactttaa |
8531450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 267 - 374
Target Start/End: Original strand, 28697494 - 28697601
Alignment:
| Q |
267 |
atcataaagacataatttagtcactgcttttgcaacattttaactttatcttgtattagaattttgatattttcatttggatggattgtcatgttatttg |
366 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||| |||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
28697494 |
atcataaagacataattcagtcactgcttttgcaacttttttgctttattttgtattagaattttgatattttgatttcgatggattgtcatgttatttg |
28697593 |
T |
|
| Q |
367 |
gaaggatt |
374 |
Q |
| |
|
||||||| |
|
|
| T |
28697594 |
taaggatt |
28697601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 474 - 522
Target Start/End: Original strand, 28697692 - 28697740
Alignment:
| Q |
474 |
tattcataatgattccctaacatacaatatcattgttgaacaattccta |
522 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||| |||| ||||||| |
|
|
| T |
28697692 |
tattcataatgattccctaatatacaatagcattgtggaactattccta |
28697740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 28697436 - 28697477
Alignment:
| Q |
16 |
atcatatgaaagatcagcacaataaccatagagacacaagat |
57 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
28697436 |
atcatatgaaagatcattacaataatcatagagacacaagat |
28697477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 13 - 426
Target Start/End: Original strand, 5154296 - 5154709
Alignment:
| Q |
13 |
aatatcatatgaaagatcagcacaataaccatagagacacaagatgacaggctgctgtttcggtggnnnnnnnaggatgacagtttggtttttctgtttt |
112 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5154296 |
aatatcatatgaaagattagcacaataaccatagagacacaagatgacaggctgctgtttcggtggtttttttaggatgacagtttggtttttctgtttt |
5154395 |
T |
|
| Q |
113 |
agccttctcttagtgctctgcagcattgcagctgttgtttgctggttgcattttttatgggtggctcctgtgccttttttccttctgttttcgcttgctt |
212 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5154396 |
agccttctgttagtgctctgcagcattgcagctgttgtttgctggttgcattttttatgggtggctcctgtgccttttttccttctattttcgcttgctt |
5154495 |
T |
|
| Q |
213 |
gctaccgttatgtaattcatggctttttgcacttcttgtgctaatccatctaacatcataaagacataatttagtcactgcttttgcaacattttaactt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||| |
|
|
| T |
5154496 |
gctaccgttatgtaattcatggctttttgcacttcttgtgctaatccatctaacatcataaagacataatttagtcacggcttttgcaactttttagctt |
5154595 |
T |
|
| Q |
313 |
tatcttgtattagaattttgatattttcatttggatggattgtcatgttatttggaaggattatcatttaatattataactagaaagacacaaattgatg |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||| |
|
|
| T |
5154596 |
tatcttgtattagaattttgatattttcatttggatggattgtcatgttatttggaaggattattatttaatattataattggaaagacacaaattgatg |
5154695 |
T |
|
| Q |
413 |
tttttcaagtttca |
426 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
5154696 |
ttcttcaagtttca |
5154709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 469 - 533
Target Start/End: Original strand, 5154725 - 5154789
Alignment:
| Q |
469 |
aatgctattcataatgattccctaacatacaatatcattgttgaacaattcctactgcactttaa |
533 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5154725 |
aatgctattcataatgattccctaacatacaatatcattgttgaacaattcctactgcactttaa |
5154789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 7e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 285 - 374
Target Start/End: Original strand, 26305587 - 26305676
Alignment:
| Q |
285 |
agtcactgcttttgcaacattttaactttatcttgtattagaattttgatattttcatttggatggattgtcatgttatttggaaggatt |
374 |
Q |
| |
|
||||||| |||||||||| ||||| |||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
26305587 |
agtcactacttttgcaactttttagctttattttgtattagaattttgatattttcatttgtatggattatcatgttatttggaaggatt |
26305676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 26305519 - 26305565
Alignment:
| Q |
13 |
aatatcatatgaaagatcagcacaataaccatagagacacaagatga |
59 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
26305519 |
aatatcatatgaaagatcagcacaataaccttagagacacaacatga |
26305565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University