View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1114_low_112 (Length: 285)

Name: NF1114_low_112
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1114_low_112
NF1114_low_112
[»] chr2 (3 HSPs)
chr2 (79-176)||(32340006-32340103)
chr2 (155-189)||(3934364-3934398)
chr2 (155-188)||(38974743-38974776)
[»] chr5 (2 HSPs)
chr5 (137-189)||(22270199-22270251)
chr5 (155-188)||(3175258-3175291)
[»] chr3 (4 HSPs)
chr3 (137-189)||(2736785-2736837)
chr3 (137-189)||(40925832-40925884)
chr3 (137-188)||(22126360-22126411)
chr3 (155-189)||(2337886-2337920)
[»] chr6 (1 HSPs)
chr6 (137-188)||(6807385-6807436)
[»] chr7 (3 HSPs)
chr7 (137-190)||(8363941-8363994)
chr7 (137-189)||(18887344-18887396)
chr7 (137-188)||(38871472-38871523)
[»] chr4 (5 HSPs)
chr4 (137-188)||(38115918-38115969)
chr4 (155-193)||(23217286-23217324)
chr4 (156-188)||(9816468-9816500)
chr4 (157-189)||(16401276-16401308)
chr4 (137-188)||(29947664-29947716)
[»] chr1 (2 HSPs)
chr1 (137-184)||(20727815-20727862)
chr1 (155-188)||(3288021-3288054)
[»] scaffold0393 (1 HSPs)
scaffold0393 (155-188)||(10626-10659)
[»] chr8 (4 HSPs)
chr8 (155-188)||(1669120-1669153)
chr8 (155-188)||(16659914-16659947)
chr8 (137-190)||(33363877-33363930)
chr8 (155-188)||(38520297-38520330)


Alignment Details
Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 79 - 176
Target Start/End: Original strand, 32340006 - 32340103
Alignment:
Q  79 attatacttgaaagtgttcagtgtaacttgtgtttggttacactttaacatacctctgttgatggcgggataacgaccacctcaaacttttttgtctg 176  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||  |||||||||||||||    
T  32340006 attatacttgaaagtgctctgtgtaacttgtgtttggttacactttaacatacctctattgatggcgggatgacggccaccctaaacttttttgtctg 32340103  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 189
Target Start/End: Complemental strand, 3934398 - 3934364
Alignment:
Q  155 ccacctcaaacttttttgtctggctccgccactga 189  Q
    ||||| |||||||||||||||||||||||||||||    
T  3934398 ccaccccaaacttttttgtctggctccgccactga 3934364  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 188
Target Start/End: Complemental strand, 38974776 - 38974743
Alignment:
Q  155 ccacctcaaacttttttgtctggctccgccactg 188  Q
    ||||| ||||||||||||||||||||||||||||    
T  38974776 ccaccccaaacttttttgtctggctccgccactg 38974743  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 137 - 189
Target Start/End: Complemental strand, 22270251 - 22270199
Alignment:
Q  137 ttgatggcgggataacgaccacctcaaacttttttgtctggctccgccactga 189  Q
    ||||||||||||||||| ||||| ||||| |||||||||||||||||||||||    
T  22270251 ttgatggcgggataacggccaccccaaacatttttgtctggctccgccactga 22270199  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 188
Target Start/End: Original strand, 3175258 - 3175291
Alignment:
Q  155 ccacctcaaacttttttgtctggctccgccactg 188  Q
    ||||| ||||||||||||||||||||||||||||    
T  3175258 ccaccccaaacttttttgtctggctccgccactg 3175291  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 2736785 - 2736837
Alignment:
Q  137 ttgatggcgggataacgaccacctcaaacttttttgtctggctccgccactga 189  Q
    ||||||||||||| ||| ||||| ||||| |||||||||||||||||||||||    
T  2736785 ttgatggcgggatgacggccaccccaaacatttttgtctggctccgccactga 2736837  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 40925832 - 40925884
Alignment:
Q  137 ttgatggcgggataacgaccacctcaaacttttttgtctggctccgccactga 189  Q
    ||||||||||||| ||| ||||| ||||| |||||||||||||||||||||||    
T  40925832 ttgatggcgggatgacggccaccccaaacatttttgtctggctccgccactga 40925884  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 188
Target Start/End: Complemental strand, 22126411 - 22126360
Alignment:
Q  137 ttgatggcgggataacgaccacctcaaacttttttgtctggctccgccactg 188  Q
    |||||||||| || ||| ||||| ||||| ||||||||||||||||||||||    
T  22126411 ttgatggcggcatgacggccaccccaaacatttttgtctggctccgccactg 22126360  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 189
Target Start/End: Complemental strand, 2337920 - 2337886
Alignment:
Q  155 ccacctcaaacttttttgtctggctccgccactga 189  Q
    ||||| |||||||||||||||||||||||||||||    
T  2337920 ccaccccaaacttttttgtctggctccgccactga 2337886  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 188
Target Start/End: Original strand, 6807385 - 6807436
Alignment:
Q  137 ttgatggcgggataacgaccacctcaaacttttttgtctggctccgccactg 188  Q
    |||||||||||||  || ||||| ||||||||||||||||||||||||||||    
T  6807385 ttgatggcgggatggcggccaccccaaacttttttgtctggctccgccactg 6807436  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 8363941 - 8363994
Alignment:
Q  137 ttgatggcgggataacgaccacctcaaacttttttgtctggctccgccactgat 190  Q
    ||||||||| |||  || ||||| ||||||||||||||||||||||||||||||    
T  8363941 ttgatggcgagatggcggccaccccaaacttttttgtctggctccgccactgat 8363994  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 18887344 - 18887396
Alignment:
Q  137 ttgatggcgggataacgaccacctcaaacttttttgtctggctccgccactga 189  Q
    ||||||||||||| ||| ||||| ||||  |||||||||||||||||||||||    
T  18887344 ttgatggcgggatgacggccaccccaaatatttttgtctggctccgccactga 18887396  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 188
Target Start/End: Complemental strand, 38871523 - 38871472
Alignment:
Q  137 ttgatggcgggataacgaccacctcaaacttttttgtctggctccgccactg 188  Q
    |||||||||||||  || ||||  ||||||||||||||||||||||||||||    
T  38871523 ttgatggcgggatggcggccactccaaacttttttgtctggctccgccactg 38871472  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 188
Target Start/End: Original strand, 38115918 - 38115969
Alignment:
Q  137 ttgatggcgggataacgaccacctcaaacttttttgtctggctccgccactg 188  Q
    |||||||||||||  || ||||| |||||||||||||| |||||||||||||    
T  38115918 ttgatggcgggatgccggccaccccaaacttttttgtcgggctccgccactg 38115969  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 193
Target Start/End: Complemental strand, 23217324 - 23217286
Alignment:
Q  155 ccacctcaaacttttttgtctggctccgccactgatgat 193  Q
    ||||| |||||||||||||||||||||||||||| ||||    
T  23217324 ccaccccaaacttttttgtctggctccgccactgctgat 23217286  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 188
Target Start/End: Original strand, 9816468 - 9816500
Alignment:
Q  156 cacctcaaacttttttgtctggctccgccactg 188  Q
    |||| ||||||||||||||||||||||||||||    
T  9816468 caccccaaacttttttgtctggctccgccactg 9816500  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 189
Target Start/End: Original strand, 16401276 - 16401308
Alignment:
Q  157 acctcaaacttttttgtctggctccgccactga 189  Q
    |||||||||||||||||||||||||| ||||||    
T  16401276 acctcaaacttttttgtctggctccgtcactga 16401308  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 188
Target Start/End: Original strand, 29947664 - 29947716
Alignment:
Q  137 ttgatggcgggataacgaccacctcaaactttt-ttgtctggctccgccactg 188  Q
    |||||||||||||  || ||||| ||||||||| |||||||||||||||||||    
T  29947664 ttgatggcgggatggcggccaccccaaactttttttgtctggctccgccactg 29947716  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 184
Target Start/End: Original strand, 20727815 - 20727862
Alignment:
Q  137 ttgatggcgggataacgaccacctcaaacttttttgtctggctccgcc 184  Q
    |||||||||||||  || ||||| ||||||||||||||||||||||||    
T  20727815 ttgatggcgggatggcggccaccccaaacttttttgtctggctccgcc 20727862  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 188
Target Start/End: Complemental strand, 3288054 - 3288021
Alignment:
Q  155 ccacctcaaacttttttgtctggctccgccactg 188  Q
    ||||| ||||||||||||||||||||||||||||    
T  3288054 ccaccccaaacttttttgtctggctccgccactg 3288021  T

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Target: scaffold0393 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 188
Target Start/End: Complemental strand, 10659 - 10626
Alignment:
Q  155 ccacctcaaacttttttgtctggctccgccactg 188  Q
    ||||| ||||||||||||||||||||||||||||    
T  10659 ccaccccaaacttttttgtctggctccgccactg 10626  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 188
Target Start/End: Original strand, 1669120 - 1669153
Alignment:
Q  155 ccacctcaaacttttttgtctggctccgccactg 188  Q
    ||||| ||||||||||||||||||||||||||||    
T  1669120 ccaccccaaacttttttgtctggctccgccactg 1669153  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 188
Target Start/End: Original strand, 16659914 - 16659947
Alignment:
Q  155 ccacctcaaacttttttgtctggctccgccactg 188  Q
    ||||| ||||||||||||||||||||||||||||    
T  16659914 ccaccccaaacttttttgtctggctccgccactg 16659947  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 33363877 - 33363930
Alignment:
Q  137 ttgatggcgggataacgaccacctcaaacttttttgtctggctccgccactgat 190  Q
    |||||||||| || ||| ||||| ||||| ||||||||||||||| ||||||||    
T  33363877 ttgatggcggcatgacggccaccccaaacatttttgtctggctccaccactgat 33363930  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 188
Target Start/End: Complemental strand, 38520330 - 38520297
Alignment:
Q  155 ccacctcaaacttttttgtctggctccgccactg 188  Q
    ||||| ||||||||||||||||||||||||||||    
T  38520330 ccaccccaaacttttttgtctggctccgccactg 38520297  T

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