View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1114_low_115 (Length: 281)
Name: NF1114_low_115
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_low_115 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 14 - 268
Target Start/End: Original strand, 3640070 - 3640324
Alignment:
| Q |
14 |
aagagttgcctgtggtactgttggaagagcaaaagatggaaactaagctgctctcctcttatgcataagtccatgtaggggctcgaaccccgaacacccc |
113 |
Q |
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| T |
3640070 |
aagagttgcctgtggtactgttggaagagcaaaagatggaaactaagctgctctcctcttatgcataagtccatgtaggggctcgaaccctgaacactcc |
3640169 |
T |
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| Q |
114 |
aaaggtgaatttctagtcagtaggttcagccacacctgtcacaccctcctctgcaactgagcgtaagccagccagaacaaaggctagagcgcgtgcttca |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3640170 |
aaaggtgaatttctagtcagtaggttcagccacacctgtcataccctcctctgcaactgagcgtaagccagccagaacaaaggctagagcgcgtgcttga |
3640269 |
T |
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| Q |
214 |
agaccatgatggacagaccgtcatgagccatgacgcccgtcatggtgcccagtct |
268 |
Q |
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| T |
3640270 |
agaccatgatggacagaccgtcatgagccgtgacgcccgtcatggtgcccagtct |
3640324 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 270
Target Start/End: Original strand, 41153936 - 41153978
Alignment:
| Q |
228 |
agaccgtcatgagccatgacgcccgtcatggtgcccagtctct |
270 |
Q |
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| T |
41153936 |
agaccgtcatcatccatgacgcccgtcatggtgcccagtctct |
41153978 |
T |
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