View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1114_low_116 (Length: 281)
Name: NF1114_low_116
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_low_116 |
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Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 14 - 271
Target Start/End: Original strand, 3640070 - 3640327
Alignment:
| Q |
14 |
aagagttgcctgtggtactgttggaagagcaaaagatggaaactaagctgctctcctcttatgcataagtccatgtaggggctcgaaccccgaacacccc |
113 |
Q |
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| T |
3640070 |
aagagttgcctgtggtactgttggaagagcaaaagatggaaactaagctgctctcctcttatgcataagtccatgtaggggctcgaaccctgaacactcc |
3640169 |
T |
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| Q |
114 |
aaaggtgaatttctagtcagtaggttcagccacacctgtcacaccctcctctgcaactgagcgtaagccagccagaacaaaggctagagcgcgtgcttca |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3640170 |
aaaggtgaatttctagtcagtaggttcagccacacctgtcataccctcctctgcaactgagcgtaagccagccagaacaaaggctagagcgcgtgcttga |
3640269 |
T |
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| Q |
214 |
agaccatgatggacagaccgtcatgagccatgacgcccgtcatggtgcccagtctgtg |
271 |
Q |
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| T |
3640270 |
agaccatgatggacagaccgtcatgagccgtgacgcccgtcatggtgcccagtctgtg |
3640327 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 268
Target Start/End: Original strand, 41153936 - 41153976
Alignment:
| Q |
228 |
agaccgtcatgagccatgacgcccgtcatggtgcccagtct |
268 |
Q |
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| T |
41153936 |
agaccgtcatcatccatgacgcccgtcatggtgcccagtct |
41153976 |
T |
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