View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1114_low_133 (Length: 265)
Name: NF1114_low_133
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_low_133 |
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| [»] scaffold0231 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 30 - 240
Target Start/End: Complemental strand, 24236957 - 24236747
Alignment:
| Q |
30 |
tgttgcataatccaaagccattccacgaagcttaaaaccactattatagagcatagatcaaataacttcgcacattagaacagtatatcctcaaaaagct |
129 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||| |
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| T |
24236957 |
tgttgcataatccaaagccattccacgtagcttaaaaccactattatagagcatagatcaaataacttcgcacattagaacggcatttcctcaaaaagct |
24236858 |
T |
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| Q |
130 |
agacaaagatggaactgattactccttcctaatacatttagcctgcttaatggaagataatgatgttggatcacagccatcagatacaactccgccttta |
229 |
Q |
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| T |
24236857 |
aaacaaagatggaactgattacttcttcctaatacatttagcctgcttaatggaagataatgatgttggatcacagccatcagatacaactccgccttta |
24236758 |
T |
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| Q |
230 |
catttttcatc |
240 |
Q |
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||||||||||| |
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| T |
24236757 |
catttttcatc |
24236747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 30 - 200
Target Start/End: Complemental strand, 22316019 - 22315849
Alignment:
| Q |
30 |
tgttgcataatccaaagccattccacgaagcttaaaaccactattatagagcatagatcaaataacttcgcacattagaacagtatatcctcaaaaagct |
129 |
Q |
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||||||||| || | |||||||| ||||||||||||| |||||||||||| || ||| ||| |||||||||||||||||||| |||||||||||||| |
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| T |
22316019 |
tgttgcatagtcgagagccattctacgaagcttaaaaacactattatagaccaaggatgaaacaacttcgcacattagaacagcatatcctcaaaaagac |
22315920 |
T |
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| Q |
130 |
agacaaagatggaactgattactccttcctaatacatttagcctgcttaatggaagataatgatgttggat |
200 |
Q |
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| T |
22315919 |
aagcaaggatggaactgattactccttcttaatgcatttagccagcttagtggaagacaatgatgtgggat |
22315849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0231 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: scaffold0231
Description:
Target: scaffold0231; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 30 - 240
Target Start/End: Complemental strand, 3610 - 3400
Alignment:
| Q |
30 |
tgttgcataatccaaagccattccacgaagcttaaaaccactattatagagcatagatcaaataacttcgcacattagaacagtatatcctcaaaaagct |
129 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||| |
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| T |
3610 |
tgttgcataatccaaagccattccacgtagcttaaaaccactattatagagcatagatcaaataacttcgcacattagaacggcatttcctcaaaaagct |
3511 |
T |
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| Q |
130 |
agacaaagatggaactgattactccttcctaatacatttagcctgcttaatggaagataatgatgttggatcacagccatcagatacaactccgccttta |
229 |
Q |
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| | ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3510 |
aaataaagatggaactgattacttcttcctaatacatttagcctgcttaatttaagataatgatgttggatcacagccatcagatacaactcctccttta |
3411 |
T |
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| Q |
230 |
catttttcatc |
240 |
Q |
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||||||||||| |
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| T |
3410 |
catttttcatc |
3400 |
T |
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