View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1114_low_139 (Length: 262)

Name: NF1114_low_139
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1114_low_139
NF1114_low_139
[»] chr2 (3 HSPs)
chr2 (1-142)||(27333607-27333748)
chr2 (33-140)||(18206099-18206206)
chr2 (31-85)||(31118503-31118557)
[»] chr7 (3 HSPs)
chr7 (4-131)||(12625886-12626013)
chr7 (62-142)||(21064014-21064094)
chr7 (5-74)||(38456066-38456135)
[»] chr1 (3 HSPs)
chr1 (1-94)||(43784370-43784463)
chr1 (4-74)||(50908248-50908318)
chr1 (1-74)||(44489066-44489139)
[»] chr6 (2 HSPs)
chr6 (40-134)||(19223198-19223292)
chr6 (4-85)||(6287286-6287367)
[»] chr3 (1 HSPs)
chr3 (42-140)||(19196361-19196459)
[»] scaffold0408 (1 HSPs)
scaffold0408 (4-85)||(5911-5992)
[»] chr8 (1 HSPs)
chr8 (4-85)||(14095569-14095650)
[»] chr4 (1 HSPs)
chr4 (4-85)||(42562161-42562242)


Alignment Details
Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 27333748 - 27333607
Alignment:
Q  1 ggttgctcctgctcaatatcaggctgatattgatgatcttcatactgatgttgttgatccacatcaaaatgatattgttgaggctcctcataataagtct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  27333748 ggttgctcctgctcaatatcaggctgatattgatgatcttcatactaatgttgttgatccacgtcaaaatgatattgttgaggctcctcataataagtct 27333649  T
Q  101 gattctgcgcctggtgctactcctcataatgttgttgatatt 142  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  27333648 gattctgcgcctggtgctactcctcataatgttgctgatatt 27333607  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 140
Target Start/End: Original strand, 18206099 - 18206206
Alignment:
Q  33 atgatcttcatactgatgttgttgatccacatcaaaatgatattgttgaggctcctcataataagtctgattctgcgcctggtgctactcctcataatgt 132  Q
    |||||| ||||||| ||| || |||| | ||||||||||||| ||||||||||||| |||||||| |||||| |||||||| || ||||||| ||||||     
T  18206099 atgatcctcatactaatgctgctgatacgcatcaaaatgatactgttgaggctccttataataaggctgattttgcgcctgctgatactcctgataatgc 18206198  T
Q  133 tgttgata 140  Q
    || |||||    
T  18206199 tgctgata 18206206  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 85
Target Start/End: Original strand, 31118503 - 31118557
Alignment:
Q  31 tgatgatcttcatactgatgttgttgatccacatcaaaatgatattgttgaggct 85  Q
    |||||||| ||||||||||| || ||||  |||||||||||||| ||||||||||    
T  31118503 tgatgatcctcatactgatgctgctgatagacatcaaaatgataatgttgaggct 31118557  T

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Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 4 - 131
Target Start/End: Complemental strand, 12626013 - 12625886
Alignment:
Q  4 tgctcctgctcaatatcaggctgatattgatgatcttcatactgatgttgttgatccacatcaaaatgatattgttgaggctcctcataataagtctgat 103  Q
    ||||| ||||||||||||| ||||||||||||||| |||||||||||||| |||| | ||||||||||||| || ||| ||||||||||||||| |||||    
T  12626013 tgctcttgctcaatatcagactgatattgatgatcctcatactgatgttgctgatacgcatcaaaatgatactggtgaagctcctcataataagcctgat 12625914  T
Q  104 tctgcgcctggtgctactcctcataatg 131  Q
    | |||||||| || ||||||||||||||    
T  12625913 tttgcgcctgctgatactcctcataatg 12625886  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 62 - 142
Target Start/End: Original strand, 21064014 - 21064094
Alignment:
Q  62 catcaaaatgatattgttgaggctcctcataataagtctgattctgcgcctggtgctactcctcataatgttgttgatatt 142  Q
    ||||||||||||||||||||||||||||||||||||  ||||||| |||||| || ||||||| |||||||||||||||||    
T  21064014 catcaaaatgatattgttgaggctcctcataataaggttgattctacgcctgctgatactcctgataatgttgttgatatt 21064094  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 38456135 - 38456066
Alignment:
Q  5 gctcctgctcaatatcaggctgatattgatgatcttcatactgatgttgttgatccacatcaaaatgata 74  Q
    |||||||||||||||||||||| |  |||||||| |||||| ||||||| |||| | ||||||| |||||    
T  38456135 gctcctgctcaatatcaggctgcttatgatgatcctcataccgatgttgctgatacgcatcaaactgata 38456066  T

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Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 43784370 - 43784463
Alignment:
Q  1 ggttgctcctgctcaatatcaggctgatattgatgatcttcatactgatgttgttgatccacatcaaaatgatattgttgaggctcctcataat 94  Q
    ||||||| |||||||||||||||||| |  |||||||  ||||||||||||||||||| ||||| ||||||||| ||||||| |||||||||||    
T  43784370 ggttgcttctgctcaatatcaggctgctcctgatgattctcatactgatgttgttgatacacattaaaatgatactgttgagactcctcataat 43784463  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 50908318 - 50908248
Alignment:
Q  4 tgctcctgctcaatatcaggctgatattgatgatcttcatactgatgttgttgatccacatcaaaatgata 74  Q
    ||||||||||||||| ||||||| |  |||||||| ||||||||||| || |||| | ||||||| |||||    
T  50908318 tgctcctgctcaataccaggctgctcatgatgatcctcatactgatgctgctgatacgcatcaaattgata 50908248  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 44489139 - 44489066
Alignment:
Q  1 ggttgctcctgctcaatatcaggctgatattgatgatcttcatactgatgttgttgatccacatcaaaatgata 74  Q
    ||||||||||| |||||| ||||||  |  |||||||||||||||||||| || |||| | ||||||| |||||    
T  44489139 ggttgctcctggtcaataccaggctactcatgatgatcttcatactgatgctgctgatacgcatcaaactgata 44489066  T

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Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 40 - 134
Target Start/End: Complemental strand, 19223292 - 19223198
Alignment:
Q  40 tcatactgatgttgttgatccacatcaaaatgatattgttgaggctcctcataataagtctgattctgcgcctggtgctactcctcataatgttg 134  Q
    ||||||||||| || |||| | |||||||||||||||||||||||||||||||||||| |||||| || ||||| |  ||||| | |||||||||    
T  19223292 tcatactgatgctgctgatacgcatcaaaatgatattgttgaggctcctcataataaggctgattatgtgcctgttaatactcttgataatgttg 19223198  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 6287286 - 6287367
Alignment:
Q  4 tgctcctgctcaatatcaggctgatattgatgatcttcatactgatgttgttgatccacatcaaaatgatattgttgaggct 85  Q
    ||||||||||||||| ||||||| |  |||||||| |||| ||||||||| |||| | ||||||| ||||| || |||||||    
T  6287286 tgctcctgctcaataccaggctgctcatgatgatcctcattctgatgttgctgatacgcatcaaactgatactggtgaggct 6287367  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 140
Target Start/End: Complemental strand, 19196459 - 19196361
Alignment:
Q  42 atactgatgttgttgatccacatcaaaatgatattgttgaggctcctcataataagtctgattctgcgcctggtgctactcctcataatgttgttgata 140  Q
    |||||||||||| ||||   ||| ||||||||||||||||||||  |||||||||| |||||| || ||||| || ||||| |||||| ||||||||||    
T  19196459 atactgatgttgctgatatgcattaaaatgatattgttgaggcttttcataataagcctgattttgtgcctgctgatactcttcataacgttgttgata 19196361  T

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Target: scaffold0408 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 5992 - 5911
Alignment:
Q  4 tgctcctgctcaatatcaggctgatattgatgatcttcatactgatgttgttgatccacatcaaaatgatattgttgaggct 85  Q
    ||||||||||||||| ||||||| |  |||||||| ||||||||||||||||||| | ||||||| ||||| || |||||||    
T  5992 tgctcctgctcaataccaggctgctcatgatgatcctcatactgatgttgttgatacgcatcaaactgatactggtgaggct 5911  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 14095650 - 14095569
Alignment:
Q  4 tgctcctgctcaatatcaggctgatattgatgatcttcatactgatgttgttgatccacatcaaaatgatattgttgaggct 85  Q
    ||||||||||||||| ||||||| |  |||||||| ||||||||||||||||||| | ||||||| ||||| || |||||||    
T  14095650 tgctcctgctcaataccaggctgctcatgatgatcctcatactgatgttgttgatacgcatcaaactgatactggtgaggct 14095569  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 42562161 - 42562242
Alignment:
Q  4 tgctcctgctcaatatcaggctgatattgatgatcttcatactgatgttgttgatccacatcaaaatgatattgttgaggct 85  Q
    |||||||||||||||  |||||  |  |||||||| |||||||||||||| |||| | ||||||| |||||||| |||||||    
T  42562161 tgctcctgctcaatactaggctactcatgatgatcctcatactgatgttgctgatacgcatcaaactgatattggtgaggct 42562242  T

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