View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1114_low_146 (Length: 252)

Name: NF1114_low_146
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1114_low_146
NF1114_low_146
[»] chr4 (2 HSPs)
chr4 (46-241)||(55273143-55273334)
chr4 (146-215)||(2721370-2721440)
[»] chr2 (2 HSPs)
chr2 (146-217)||(41935667-41935739)
chr2 (146-218)||(32422882-32422955)
[»] chr5 (2 HSPs)
chr5 (146-216)||(15674121-15674192)
chr5 (146-218)||(33347216-33347289)
[»] chr3 (3 HSPs)
chr3 (146-215)||(10085409-10085479)
chr3 (146-215)||(10192329-10192399)
chr3 (146-217)||(19618574-19618646)
[»] chr8 (1 HSPs)
chr8 (146-213)||(2472427-2472495)
[»] chr7 (2 HSPs)
chr7 (146-221)||(48558822-48558898)
chr7 (145-216)||(1876186-1876258)
[»] scaffold0160 (1 HSPs)
scaffold0160 (146-216)||(26269-26340)
[»] chr1 (4 HSPs)
chr1 (146-216)||(22580210-22580281)
chr1 (146-216)||(29054749-29054820)
chr1 (146-216)||(48796430-48796501)
chr1 (145-201)||(7842459-7842516)
[»] chr6 (1 HSPs)
chr6 (146-217)||(33328489-33328561)


Alignment Details
Target: chr4 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 46 - 241
Target Start/End: Complemental strand, 55273334 - 55273143
Alignment:
Q  46 tcatagccgaaaaatcagcaatcatttgaatgatttgcaggtggtaattggcatggtcatcatcgaaatacagaggtaaaatgaggaaaaagatgaacca 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55273334 tcatagccgaaaaatcagcaatcatttgaatgatttgcaggtggtaattggcatggtcatcatcgaaatacagaggtaaaatgaggaaaaagatgaacca 55273235  T
Q  146 agggatgacaatgggtaccaatggacatggtactacattgcccatctccatacccgtgtttgtaaaaaatattagttccggtcactaagtgttcat 241  Q
    || |||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||| |||   ||||||||||||    
T  55273234 agagatgacaatgggtaccaatggatatggtactacattgcccatctccata-ccatgtttgtaaaaaatattagtttcgg---ctaagtgttcat 55273143  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 2721440 - 2721370
Alignment:
Q  146 agggatgacaatgggtacc-aatggacatggtactacattgcccatctccatacccgtgtttgtaaaaaat 215  Q
    ||||||| ||||||||||| |||||| | ||||||||| |  ||||||||||||||| |||||||||||||    
T  2721440 agggatggcaatgggtacccaatggatagggtactacagtatccatctccatacccgcgtttgtaaaaaat 2721370  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 217
Target Start/End: Complemental strand, 41935739 - 41935667
Alignment:
Q  146 agggatgacaatgggta-ccaatggacatggtactacattgcccatctccatacccgtgtttgtaaaaaatat 217  Q
    ||||||||||||||||| ||||||| || ||||||| | | |||||||||||||||| |||||||||||||||    
T  41935739 agggatgacaatgggtatccaatgggcagggtactatagtacccatctccatacccgcgtttgtaaaaaatat 41935667  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 218
Target Start/End: Complemental strand, 32422955 - 32422882
Alignment:
Q  146 agggatgacaatgggtacc-aatggacatggtactacattgcccatctccatacccgtgtttgtaaaaaatatt 218  Q
    ||||||| ||||||||||| |||||| | ||||||||| ||||| || |||||||||  ||| |||||||||||    
T  32422955 agggatggcaatgggtacccaatggatacggtactacaatgcccgtccccatacccgcatttataaaaaatatt 32422882  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 216
Target Start/End: Complemental strand, 15674192 - 15674121
Alignment:
Q  146 agggatgacaatgggta-ccaatggacatggtactacattgcccatctccatacccgtgtttgtaaaaaata 216  Q
    ||||||||||||||||| ||||||| || ||||||| | | |||||| ||||||||| ||||||||||||||    
T  15674192 agggatgacaatgggtatccaatgggcagggtactatagtacccatccccatacccgcgtttgtaaaaaata 15674121  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 218
Target Start/End: Complemental strand, 33347289 - 33347216
Alignment:
Q  146 agggatgacaatgggtacc-aatggacatggtactacattgcccatctccatacccgtgtttgtaaaaaatatt 218  Q
    ||||||| ||||||||||| ||||| || ||||||| | | |||||| ||||| ||| ||||||||||||||||    
T  33347289 agggatggcaatgggtacccaatgggcagggtactatagtacccatccccatatccgcgtttgtaaaaaatatt 33347216  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 10085479 - 10085409
Alignment:
Q  146 agggatgacaatgggtacc-aatggacatggtactacattgcccatctccatacccgtgtttgtaaaaaat 215  Q
    ||||||| ||||||||||| |||||| | ||||||||| |  ||||||||||||||| |||||||||||||    
T  10085479 agggatggcaatgggtacccaatggatagggtactacagtatccatctccatacccgcgtttgtaaaaaat 10085409  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 10192399 - 10192329
Alignment:
Q  146 agggatgacaatgggtacc-aatggacatggtactacattgcccatctccatacccgtgtttgtaaaaaat 215  Q
    ||||||| ||||||||||| |||||| | ||||||||| |  ||||||||||||||| |||||||||||||    
T  10192399 agggatggcaatgggtacccaatggatagggtactacagtatccatctccatacccgcgtttgtaaaaaat 10192329  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 19618574 - 19618646
Alignment:
Q  146 agggatgacaatgggta-ccaatggacatggtactacattgcccatctccatacccgtgtttgtaaaaaatat 217  Q
    ||||||| ||||||||| ||||||| || |||||||||||| || || |||||||||  ||| ||||||||||    
T  19618574 agggatggcaatgggtatccaatgggcagggtactacattgtccgtccccatacccgcatttataaaaaatat 19618646  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 2472495 - 2472427
Alignment:
Q  146 agggatgacaatgggta-ccaatggacatggtactacattgcccatctccatacccgtgtttgtaaaaa 213  Q
    ||||||| ||||||||| |||||||  | ||||||||| ||||||||||||||||||  ||||||||||    
T  2472495 agggatggcaatgggtatccaatgggtagggtactacaatgcccatctccatacccgcatttgtaaaaa 2472427  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 221
Target Start/End: Complemental strand, 48558898 - 48558822
Alignment:
Q  146 agggatgacaatgggta-ccaatggacatggtactacattgcccatctccatacccgtgtttgtaaaaaatattagt 221  Q
    ||||||||||||||||| ||||||| || ||||||| | | |||||| |||||||||  |||||||||||| |||||    
T  48558898 agggatgacaatgggtatccaatgggcacggtactatagtacccatccccatacccgcatttgtaaaaaatgttagt 48558822  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 1876258 - 1876186
Alignment:
Q  145 aagggatgacaatgggtacc-aatggacatggtactacattgcccatctccatacccgtgtttgtaaaaaata 216  Q
    |||||||||||||||||||| |||||  | |||||||   | |||||| ||||||||| ||||||||||||||    
T  1876258 aagggatgacaatgggtacccaatgggaagggtactatggtacccatccccatacccgcgtttgtaaaaaata 1876186  T

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Target: scaffold0160 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 216
Target Start/End: Complemental strand, 26340 - 26269
Alignment:
Q  146 agggatgacaatgggtacc-aatggacatggtactacattgcccatctccatacccgtgtttgtaaaaaata 216  Q
    ||||||| ||||||||||| |||||| | ||||||| | | |||||| ||||||||| ||||||||||||||    
T  26340 agggatggcaatgggtacccaatggatagggtactatagtacccatccccatacccgcgtttgtaaaaaata 26269  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 216
Target Start/End: Complemental strand, 22580281 - 22580210
Alignment:
Q  146 agggatgacaatgggta-ccaatggacatggtactacattgcccatctccatacccgtgtttgtaaaaaata 216  Q
    ||||||||||||||||| || ||||  | ||||||||| ||||| || | ||||||||||||||||||||||    
T  22580281 agggatgacaatgggtatcctatgggtagggtactacaatgcccgtcccaatacccgtgtttgtaaaaaata 22580210  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 216
Target Start/End: Complemental strand, 29054820 - 29054749
Alignment:
Q  146 agggatgacaatgggtacc-aatggacatggtactacattgcccatctccatacccgtgtttgtaaaaaata 216  Q
    ||||||| ||||||||||| |||||| | |||||| ||||||||||||||||||| |  ||| |||||||||    
T  29054820 agggatggcaatgggtacccaatggatagggtactgcattgcccatctccatacctgcatttataaaaaata 29054749  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 216
Target Start/End: Original strand, 48796430 - 48796501
Alignment:
Q  146 agggatgacaatgggtacc-aatggacatggtactacattgcccatctccatacccgtgtttgtaaaaaata 216  Q
    ||||||||||||||||||| ||||| || ||||||| | | |||||  ||||||||| ||||||||||||||    
T  48796430 agggatgacaatgggtacccaatgggcagggtactatagtacccattcccatacccgcgtttgtaaaaaata 48796501  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 7842459 - 7842516
Alignment:
Q  145 aagggatgacaatgggta-ccaatggacatggtactacattgcccatctccatacccg 201  Q
    |||||||| ||||||||| |||||||| | ||||||||| |||||||| |||||||||    
T  7842459 aagggatggcaatgggtacccaatggatagggtactacaatgcccatccccatacccg 7842516  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 33328489 - 33328561
Alignment:
Q  146 agggatgacaatgggtacc-aatggacatggtactacattgcccatctccatacccgtgtttgtaaaaaatat 217  Q
    ||||||| ||||||||||| |||||| | ||||||||| || || ||||||||||||  ||| ||||||||||    
T  33328489 agggatggcaatgggtacccaatggatagggtactacaatgtccgtctccatacccgcatttataaaaaatat 33328561  T

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