View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1114_low_148 (Length: 251)
Name: NF1114_low_148
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_low_148 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 39882625 - 39882388
Alignment:
| Q |
1 |
taagcaaaagaacgagacattagagtaccttagaacttgcacaagaatatggtgatgatcatgacgtgtggtgtgggtgtggcaactcattttaattctc |
100 |
Q |
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| T |
39882625 |
taagcaaaagaacgagacattagagtaccttagaacttgcacaaggaaatggtgatgatcatgacgtgtggtgtgggtgtggcaactcattttaattctc |
39882526 |
T |
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| Q |
101 |
tattaattaataggtttttgtataaagaaatttgtggatttaggggtgttccacgagagattagaataagaggggaaacctgattttctactactttgat |
200 |
Q |
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| T |
39882525 |
tattaat----agttttttgtataaggaaatttgtggatttaggggtgttccacgagagattagagtaagaggggaaacttgattttctactactttgat |
39882430 |
T |
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| Q |
201 |
cattaatgcaaagaaagggaaggaagaatgagtgagaataat |
242 |
Q |
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| T |
39882429 |
cattaatgcaaagaaagggaaggaagaacgagtgagaataat |
39882388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 11036962 - 11037171
Alignment:
| Q |
1 |
taagcaaaagaacgagacattagagtaccttagaacttgcacaa-gaatatggtgatgatcatgacgtgtggtgtgggtgtggcaactcattttaattct |
99 |
Q |
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|||||||||||| | |||| | |||||||||||||||||||||| | | | ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
11036962 |
taagcaaaagaatgggacaatggagtaccttagaacttgcacaaaggaaagggtgatgatcatgacgtgtggtgtgggtgtggcaactcattttcattct |
11037061 |
T |
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| Q |
100 |
ctattaattaataggtttttgtataaagaaatttgtggattta-ggggtgttccacgagagattagaataagaggggaaacctgattttctactactttg |
198 |
Q |
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| T |
11037062 |
ct----tttaataggtttttgtataaagaaatttgaggatttagggggtggtccacgagagattagagtaagaggggaaacttgatttcctactactggg |
11037157 |
T |
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| Q |
199 |
atcattaatgcaaa |
212 |
Q |
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||||||||| |||| |
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| T |
11037158 |
atcattaatacaaa |
11037171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 13163984 - 13164193
Alignment:
| Q |
1 |
taagcaaaagaacgagacattagagtaccttagaacttgcacaa-gaatatggtgatgatcatgacgtgtggtgtgggtgtggcaactcattttaattct |
99 |
Q |
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|||||||||||| | |||| | |||||||||||||||||||||| | | | ||||||||||||||||| ||||||||||||||||||||||||| ||| | |
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| T |
13163984 |
taagcaaaagaatgggacaatggagtaccttagaacttgcacaaaggaaagggtgatgatcatgacgtctggtgtgggtgtggcaactcattttcattat |
13164083 |
T |
|
| Q |
100 |
ctattaattaataggtttttgtataaagaaatttgtggattta-ggggtgttccacgagagattagaataagaggggaaacctgattttctactactttg |
198 |
Q |
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|| |||||||||||||||||||||||||||| ||||||| |||||||| || ||||||||||| ||||||||||||| |||||| |||||||| | |
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| T |
13164084 |
ct----tttaataggtttttgtataaagaaatttgaggatttagggggtgtttcatgagagattagagtaagaggggaaacttgatttcctactactggg |
13164179 |
T |
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| Q |
199 |
atcattaatgcaaa |
212 |
Q |
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||||||||| |||| |
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| T |
13164180 |
atcattaatacaaa |
13164193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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