View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1114_low_154 (Length: 243)
Name: NF1114_low_154
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_low_154 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 112 - 243
Target Start/End: Complemental strand, 2018587 - 2018456
Alignment:
| Q |
112 |
aacctgtggaagtcggaaaagtagttgtcatcaaggtcgaaggaacggagggagagccagagtggtttccatctctttgacagaaggctagtagcaacag |
211 |
Q |
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| T |
2018587 |
aacctgtggaagtcggaaaagtagttgtcatcaaggtcgaaggaacggaaggagagccagagtggtttccatctctttgacagaaggctagtagcaacag |
2018488 |
T |
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| Q |
212 |
catccctcgtcggaaggaacgacagaatgtga |
243 |
Q |
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| T |
2018487 |
catccctcgtcggaaggaacgacagaatgtga |
2018456 |
T |
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Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 148 - 243
Target Start/End: Complemental strand, 2005700 - 2005605
Alignment:
| Q |
148 |
tcgaaggaacggagggagagccagagtggtttccatctctttgacagaaggctagtagcaacagcatccctcgtcggaaggaacgacagaatgtga |
243 |
Q |
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| T |
2005700 |
tcgaaggaacggagtgagagccaaagtggtttccatctctttgacagaaggctagtagcagacgcatctctcgtcggaaggcatgacagaatgtga |
2005605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 151 - 243
Target Start/End: Complemental strand, 2011871 - 2011779
Alignment:
| Q |
151 |
aaggaacggagggagagccagagtggtttccatctctttgacagaaggctagtagcaacagcatccctcgtcggaaggaacgacagaatgtga |
243 |
Q |
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| T |
2011871 |
aaggaacggagcgagagccaaagtggtttccatctctttgatagaagacttgtagcagcagcatctctcgttggaaggaatgagagaatgtga |
2011779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 53 - 87
Target Start/End: Original strand, 913229 - 913263
Alignment:
| Q |
53 |
gttgttatatactatcatcaatgcctttcttcttg |
87 |
Q |
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| T |
913229 |
gttgttatatactatcatcaatgcctttcttcttg |
913263 |
T |
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