View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1114_low_157 (Length: 228)
Name: NF1114_low_157
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_low_157 |
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Alignment Details
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 21 - 208
Target Start/End: Complemental strand, 40377789 - 40377602
Alignment:
| Q |
21 |
aaggcaaatttattgataaagatcaaattatctttctgatcgattaaaaacccaataaagtaaggtcaattacgccaaaatccaagacaaacaaggcaaa |
120 |
Q |
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| T |
40377789 |
aaggcaaatttattaataaagatcaaattatctttctgatcgactaaaaacccaataaagtaaggttaattacgccaaaatccaagacaaacaaggcaaa |
40377690 |
T |
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| Q |
121 |
acaaaatgaaggagcaccacacaaaagtacatcctgactccatctccacgtccaagtctgcctcttaagatcgtgccgcacttcgcaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| | |||||||||| |
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| T |
40377689 |
acaaaatgaaggagcaccacacaaaagtacatcctgactccatctccacgtccatgtctgcctcttaatatcgtgtcacacttcgcaa |
40377602 |
T |
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