View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1114_low_159 (Length: 222)
Name: NF1114_low_159
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_low_159 |
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| [»] scaffold0002 (2 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 39 - 202
Target Start/End: Original strand, 422733 - 422896
Alignment:
| Q |
39 |
ctagctgttgcaccatcaggagtagctatggtttcttgatcatcatgaatggattcctcccctgtgactgcgactgtgttgttgttcttgtccaacataa |
138 |
Q |
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| T |
422733 |
ctaggtgtttcatcatcaggagtagctatggtttcttgatcattatgaatggattcctcccctgtgactgcgactgtgttgttgttcttgtccaacataa |
422832 |
T |
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| Q |
139 |
tatactaatttggtatttcgtcgatttgatttggcgataaagaaatagttttgttgatggaggt |
202 |
Q |
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| T |
422833 |
tatactaatttggtatttcgtcgatttgatttggcgataaagaaatagttttgttgatggaggt |
422896 |
T |
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Target: scaffold0002; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 129 - 202
Target Start/End: Original strand, 411216 - 411289
Alignment:
| Q |
129 |
tccaacataatatactaatttggtatttcgtcgatttgatttggcgataaagaaatagttttgttgatggaggt |
202 |
Q |
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| T |
411216 |
tccaacataatttactaacttggtatttcgtcgatttgatttggcgataaggaaatagttttgttgatgtaggt |
411289 |
T |
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Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 52 - 130
Target Start/End: Original strand, 30208922 - 30209000
Alignment:
| Q |
52 |
catcaggagtagctatggtttcttgatcatcatgaatggattcctcccctgtgactgcgactgtgttgttgttcttgtc |
130 |
Q |
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| T |
30208922 |
catcaggagcagctatggtttcttgattatcaggaatggattcctcccctgtgaaagcaactgtgttgttgttgttgtc |
30209000 |
T |
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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 202
Target Start/End: Original strand, 17529844 - 17529914
Alignment:
| Q |
132 |
aacataatatactaatttggtatttcgtcgatttgatttggcgataaagaaatagttttgttgatggaggt |
202 |
Q |
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| T |
17529844 |
aacatgatatactaacttggtatttcatcaattggatttggtgataaagaaatatttttgatgatggaggt |
17529914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 195
Target Start/End: Complemental strand, 17530725 - 17530659
Alignment:
| Q |
129 |
tccaacataatatactaatttggtatttcgtcgatttgatttggcgataaagaaatagttttgttga |
195 |
Q |
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| T |
17530725 |
tccaacataatatactaacttggcatttcatcgatatgattttgtgataaagaaatacttttgttga |
17530659 |
T |
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