View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1114_low_16 (Length: 510)
Name: NF1114_low_16
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 9641553 - 9641944
Alignment:
| Q |
1 |
ttgcgtaatcagtatatcattggtcgttggatcaagatcgaacaatctaaatttcaatacatcataaatgtattaactacgagaaagagtcaaatttcta |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9641553 |
ttgcgtaatcaatatatcattggtcgttggatcaagatcgaataatttaaatttcaatacatcataaatgtattaactacgagaaagagtcaaatttcta |
9641652 |
T |
|
| Q |
101 |
gccacaagcaatccgatttcaataatatgaggcaatcaaatatttcaaaggtgaactatgattaaactattttcatataagttatagttcataaaaaatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9641653 |
gccacaagcaatccgatttcaataatatgaggcaatcaaatatttcaaaggtgaactatgattaaactattttcatataagttatagttcataaaaaatc |
9641752 |
T |
|
| Q |
201 |
tt-aagagaatttattgaaagaaactgaatatttaacttatgataataaatcataagctatatttatagttcatccaaatattcaggcaactgtttatga |
299 |
Q |
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|| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9641753 |
ttaaagagaatttattgaaagaaactgaata-ttaacttatgataataaatcataagctatatttatagttcatccaaatattcaggcaactgtttatga |
9641851 |
T |
|
| Q |
300 |
tagaatctagtagacttaatgattttgatattatggtgatataaatgataaacttaccacatattggtaagaaaatgctcggttgttgtatca |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
9641852 |
tagaatctagtagacttaatgattttgatattatggtgatataaatgataaacttaccacatattggtaagaaaatgttcggttgttgtatca |
9641944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 393 - 492
Target Start/End: Original strand, 33025923 - 33026021
Alignment:
| Q |
393 |
gtaaaactcctcattcaacttcgatgcctgtgcaagtcattcaattcgttagtttctcatcccaaattcgctaaaaaacatcttcgcatgtcaaacacgc |
492 |
Q |
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| T |
33025923 |
gtaaaactcctcattcaacttcgatgcctatgcaagtcattcaattcgttagtttctgat-ccaaattcgcttaaaaacatcttcgcatgtcaaacacgc |
33026021 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 393 - 493
Target Start/End: Original strand, 33037419 - 33037519
Alignment:
| Q |
393 |
gtaaaactcctcattcaacttcgatgcctgtgcaagtcattcaattcgttagtttctcatcccaaattcgctaaaaaacatcttcgcatgtcaaacacgc |
492 |
Q |
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|||||||||||||||||||||||||| || || ||||| ||||||||||| ||||| |||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
33037419 |
gtaaaactcctcattcaacttcgatgtctctgtaagtctatcaattcgttaatttctgatcctaaattcgctaagaaacatcttcgcatgtcaaacacgc |
33037518 |
T |
|
| Q |
493 |
g |
493 |
Q |
| |
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| |
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|
| T |
33037519 |
g |
33037519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 393 - 490
Target Start/End: Original strand, 33019525 - 33019622
Alignment:
| Q |
393 |
gtaaaactcctcattcaacttcgatgcctgtgcaagtcattcaattcgttagtttctcatcccaaattcgctaaaaaacatcttcgcatgtcaaacac |
490 |
Q |
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|||||| |||| ||||||||||||||||| ||||||||| ||||||| ||||||||| |||| ||||| ||||||||||||||| ||||||||||||| |
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| T |
33019525 |
gtaaaaatccttattcaacttcgatgcctctgcaagtcagtcaattcattagtttctgatccaaaatttgctaaaaaacatctttgcatgtcaaacac |
33019622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 396 - 486
Target Start/End: Original strand, 33023509 - 33023599
Alignment:
| Q |
396 |
aaactcctcattcaacttcgatgcctgtgcaagtcattcaattcgttagtttctcatcccaaattcgctaaaaaacatcttcgcatgtcaa |
486 |
Q |
| |
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||||||||| ||||||||| ||| || |||||||| |||||||||||| | | | ||||| |||||| || ||||| |||||||||||| |
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| T |
33023509 |
aaactcctccttcaacttcaatgtctttgcaagtccttcaattcgttaatgtgtgatcccgtattcgcaaagaaacactttcgcatgtcaa |
33023599 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 486
Target Start/End: Original strand, 2501458 - 2501533
Alignment:
| Q |
411 |
cttcgatgcctgtgcaagtcattcaattcgttagtttctcatcccaaattcgctaaaaaacatcttcgcatgtcaa |
486 |
Q |
| |
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||||||||||| || |||| |||||||| ||| ||||| |||| |||||||| || ||||||||||| ||||||| |
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| T |
2501458 |
cttcgatgcctttgtaagttcttcaattctttaatttctgatcctaaattcgcaaagaaacatcttcgtatgtcaa |
2501533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 486
Target Start/End: Original strand, 12217304 - 12217388
Alignment:
| Q |
402 |
ctcattcaacttcgatgcctgtgcaagtcattcaattcgttagtttctcatcccaaattcgctaaaaaacatcttcgcatgtcaa |
486 |
Q |
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| T |
12217304 |
ctcattcagcttcgctgcctctgtaagtccttcaattctttaatctctgatcccaaatttgcagagaaacatcttcgcttgtcaa |
12217388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 408 - 492
Target Start/End: Complemental strand, 37758504 - 37758420
Alignment:
| Q |
408 |
caacttcgatgcctgtgcaagtcattcaattcgttagtttctcatcccaaattcgctaaaaaacatcttcgcatgtcaaacacgc |
492 |
Q |
| |
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||||| |||||||| |||||||| || ||||| ||| | | |||||||||||||||| || |||||||| ||||||| ||||| |
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| T |
37758504 |
caactccgatgcctctgcaagtccttgaattctttaatcttggatcccaaattcgctaagaagcatcttcgtatgtcaaccacgc |
37758420 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 406 - 486
Target Start/End: Complemental strand, 24418235 - 24418155
Alignment:
| Q |
406 |
ttcaacttcgatgcctgtgcaagtcattcaattcgttagtttctcatcccaaattcgctaaaaaacatcttcgcatgtcaa |
486 |
Q |
| |
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|||||||||| || || |||||||| |||||||| ||| | ||| ||||||||||||| || || || |||||| |||||| |
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| T |
24418235 |
ttcaacttcgctgtctctgcaagtccttcaattcattaatctctgatcccaaattcgcaaacaagcaccttcgcttgtcaa |
24418155 |
T |
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