View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1114_low_18 (Length: 497)
Name: NF1114_low_18
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-100; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 180 - 397
Target Start/End: Original strand, 24620096 - 24620313
Alignment:
| Q |
180 |
aatgatatatcatggttcaatgtatgtttgaaaatgatcttaccaaagttgaactaattttccatctaattgaattttataaactaagattttaatttgg |
279 |
Q |
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| T |
24620096 |
aatgatatatcatggttcaatgtatgtttgaaaatgatcttaccaaagttgaactaattttccatctaattgaatttgataaactaagattttaatttgg |
24620195 |
T |
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| Q |
280 |
aacaaatttctttgaattattattttcaaggtatagccaaatttagtttacaatttttcaaaatatattctacaaaatcaaatcaactttaaaatagaca |
379 |
Q |
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| T |
24620196 |
atcaaatttctttgaattattattttcaatgtatatccaaatttagtttacaatttttcaaaacacattctataaaatcaaatcaactttaaaatagaca |
24620295 |
T |
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| Q |
380 |
tgaaagactagtcttaac |
397 |
Q |
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|||||||||||| ||||| |
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| T |
24620296 |
tgaaagactagttttaac |
24620313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 22488591 - 22488522
Alignment:
| Q |
1 |
aatgcttgataacacgacagaataacatgcacgaatgcacacgacatatttcaaaccatttgatgaaatg |
70 |
Q |
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| T |
22488591 |
aatgcttgatagcacgacagaataacatgcacgaatgcacacgacatatttcaaaccatttgatgaaatg |
22488522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 112 - 179
Target Start/End: Complemental strand, 22488480 - 22488413
Alignment:
| Q |
112 |
gccttccgcatgatttgtgtgtcgtgtattgtcgtggggataaagagtcgtgttgtatagcacttctc |
179 |
Q |
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| T |
22488480 |
gccttccgcatgatttgtgtgttgtgtattgtcgtggggataaagagtcgtgttgtatagcacttctc |
22488413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 112 - 181
Target Start/End: Complemental strand, 8557988 - 8557919
Alignment:
| Q |
112 |
gccttccgcatgatttgtgtgtcgtgtattgtcgtggggataaagagtcgtgttgtatagcacttctcaa |
181 |
Q |
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| T |
8557988 |
gccttccgcatgatttgtgtgtcgtgtattgtcgtggggataaagagtcgtgttgtatagcacttctcaa |
8557919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 8558099 - 8558030
Alignment:
| Q |
1 |
aatgcttgataacacgacagaataacatgcacgaatgcacacgacatatttcaaaccatttgatgaaatg |
70 |
Q |
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| T |
8558099 |
aatgcttgatagcacgacagaataacatgcatgaatgcacacgacatatttcaaaccatttgatgaaatg |
8558030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 159
Target Start/End: Complemental strand, 33508239 - 33508196
Alignment:
| Q |
116 |
tccgcatgatttgtgtgtcgtgtattgtcgtggggataaagagt |
159 |
Q |
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| T |
33508239 |
tccgcatgatttgtgtgtggtgtattgtcgtgagggtaaagagt |
33508196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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