View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1114_low_20 (Length: 493)
Name: NF1114_low_20
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 368; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 30 - 426
Target Start/End: Complemental strand, 40314620 - 40314223
Alignment:
| Q |
30 |
cataggtccctgactatagatttgtacattctgcattattgttatttgtagtatatcaatatgattaaaatactgacagtactctgtactattgctgtca |
129 |
Q |
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| T |
40314620 |
cataggtccctgactatagatttgtacattctgcattattgttatttgtagtatatcaatatgattaaaatactgacagtactctgtactattgctgtca |
40314521 |
T |
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| Q |
130 |
tgaagtgtagtatatat--gaaaacaaattgggctccttgaagttgaaaaactactcccatgtggaaattcccccataaatttgatcaaagaagtttaaa |
227 |
Q |
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| T |
40314520 |
tgaagtgtagtatatatatgaaaacaaattgggctccttgaagttgaaaaactactcccatgtggaaattcccccataaatttgatcaaagaagtt-aaa |
40314422 |
T |
|
| Q |
228 |
cagatgacaatatggagcaagagcttaaaggatcagaaaccttatatgtaaggttgttcttagcataggaatcattattaacaggccggcataagaatgt |
327 |
Q |
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| T |
40314421 |
cagatgacaatatggagcaagagtttaaaggatcagaaaccttatatgtaaggttgttcttagcataggaatcattattaacaggccggcataagaatgt |
40314322 |
T |
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| Q |
328 |
cattctggaatgaaattaactaactggcaccgtatgagataagtctatataatgtgacaattacacatcacagtgttaagccttcattttaaaactcaa |
426 |
Q |
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| T |
40314321 |
cattctagaatgaaattaactaactggcaccgtatgagataagtctatataatgtgacaattacacatcacagtattaagccttcattttaaaactcaa |
40314223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 142 - 310
Target Start/End: Complemental strand, 40299953 - 40299794
Alignment:
| Q |
142 |
tatatgaaaacaaattgggctccttgaagttgaaaaactactcccatgtggaaattcccccataaatttgatcaaagaagtttaaacagatgacaatatg |
241 |
Q |
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| T |
40299953 |
tatatgaaaacaaattgggctccttgaagttgaaaaactgctcccatgtggaaatt-ctccataagtttgattagagaag-ttaaacagatgacaatgt- |
40299857 |
T |
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| Q |
242 |
gagcaagagcttaaaggatcagaaaccttatatgtaaggttgttcttagcataggaatcattattaaca |
310 |
Q |
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|| |||||||||||| ||||||| |||||||||||||||||||| |||||||| |||||||| |
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| T |
40299856 |
------gatcttaaaggatcatgaaccttacatgtaaggttgttcttagcaaaggaatcagtattaaca |
40299794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 431 - 482
Target Start/End: Complemental strand, 40299525 - 40299474
Alignment:
| Q |
431 |
aaatataattttcaaaaagtaatgaacacaactttgacaaatgcatattcat |
482 |
Q |
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| T |
40299525 |
aaatataattttcaaaaagtaatgaacacaactttgacaaatgcatattcat |
40299474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 431 - 482
Target Start/End: Complemental strand, 40314055 - 40314004
Alignment:
| Q |
431 |
aaatataattttcaaaaagtaatgaacacaactttgacaaatgcatattcat |
482 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40314055 |
aaatataattttcaaaaagtaatgaacacaactttgacaaatgcatattcat |
40314004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 142 - 320
Target Start/End: Complemental strand, 43072562 - 43072386
Alignment:
| Q |
142 |
tatatgaaaacaaattgggctccttgaagtt-gaaaaactactcccatgtggaaattcccccataaatttgatcaaagaagtttaaacagatgacaatat |
240 |
Q |
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|||||||||||||| ||||||| |||||||| ||||||||| ||| ||||||||||||||| ||| ||||||| | ||||||| ||||| ||||||| | |
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| T |
43072562 |
tatatgaaaacaaactgggctc-ttgaagtttgaaaaactagtccgatgtggaaattcccc-atagatttgattagagaagtt-aaacatttgacaatgt |
43072466 |
T |
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| Q |
241 |
ggagcaagagcttaaaggatcagaaaccttatatgtaaggttgttcttagcataggaatcattattaacaggccggcata |
320 |
Q |
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| T |
43072465 |
gaagcaagagcttaaaggatcagaaaccttacatgtaaggcttttcttagcaaaggaatcagtattaacatgcctgcata |
43072386 |
T |
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