View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1114_low_26 (Length: 447)

Name: NF1114_low_26
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1114_low_26
NF1114_low_26
[»] chr1 (10 HSPs)
chr1 (151-428)||(5031687-5031960)
chr1 (297-379)||(17983258-17983340)
chr1 (298-377)||(41985251-41985330)
chr1 (1-74)||(5032037-5032110)
chr1 (306-379)||(20607548-20607621)
chr1 (299-377)||(3820299-3820377)
chr1 (306-378)||(5757798-5757870)
chr1 (306-379)||(20610819-20610892)
chr1 (306-374)||(6073242-6073310)
chr1 (305-377)||(41987968-41988040)
[»] chr2 (4 HSPs)
chr2 (298-379)||(27282655-27282736)
chr2 (297-378)||(36048279-36048360)
chr2 (300-378)||(36047048-36047126)
chr2 (306-378)||(44206819-44206891)
[»] chr8 (6 HSPs)
chr8 (298-379)||(43731576-43731657)
chr8 (306-379)||(43748330-43748403)
chr8 (298-378)||(18364532-18364612)
chr8 (298-377)||(27547174-27547253)
chr8 (305-379)||(9944022-9944096)
chr8 (305-378)||(35929245-35929318)
[»] chr3 (10 HSPs)
chr3 (297-378)||(27481699-27481780)
chr3 (299-379)||(31604695-31604775)
chr3 (296-378)||(48394373-48394455)
chr3 (298-379)||(41665423-41665504)
chr3 (290-377)||(52044101-52044187)
chr3 (305-379)||(39623992-39624066)
chr3 (300-379)||(47667102-47667181)
chr3 (306-379)||(39918624-39918697)
chr3 (306-379)||(48402436-48402509)
chr3 (315-362)||(48413993-48414040)
[»] chr7 (7 HSPs)
chr7 (295-379)||(31516559-31516643)
chr7 (306-385)||(28040454-28040533)
chr7 (306-379)||(33171122-33171195)
chr7 (306-379)||(44206096-44206169)
chr7 (298-378)||(39796744-39796824)
chr7 (305-379)||(23260674-23260748)
chr7 (306-377)||(38538910-38538981)
[»] chr5 (4 HSPs)
chr5 (306-378)||(32684983-32685055)
chr5 (305-378)||(8880743-8880816)
chr5 (306-379)||(20190346-20190419)
chr5 (298-379)||(20200366-20200447)
[»] chr4 (1 HSPs)
chr4 (306-378)||(24267487-24267559)
[»] scaffold0012 (1 HSPs)
scaffold0012 (316-379)||(184931-184994)
[»] chr6 (1 HSPs)
chr6 (328-360)||(30899737-30899769)


Alignment Details
Target: chr1 (Bit Score: 127; Significance: 2e-65; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 151 - 428
Target Start/End: Complemental strand, 5031960 - 5031687
Alignment:
Q  151 ctgggggaagagtattaactgtgtgatat--tnnnnnnncatttttcctttcaagattttgtaggaaaagaacgagaaaggttttcacgaacnnnnnnng 248  Q
    |||||||||||||||||| ||||||||||  |       ||||||||||||||||||||||||||||||||||||  |||||||||||||||       |    
T  5031960 ctgggggaagagtattaagtgtgtgatatattaaaaaaacatttttcctttcaagattttgtaggaaaagaacga--aaggttttcacgaacaaaaaaag 5031863  T
Q  249 cacgaaagacaaaactgcataattaatgttaattattgccaaaatgaataa--aaaagacgccgctgccggggatcgaacccgggtcacccgcgtgacag 346  Q
    | ||||||||||||||||||||||| ||| ||  | ||    |||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  5031862 cccgaaagacaaaactgcataattattgtcaa--aatg----aatgaaaaacaaaaagacgccgctgccggggatcgaacccgggtcacccgcgtgacag 5031769  T
Q  347 gcgggaatacttaccactatactacaacgacttctatgtccacttggtcgtataaagtttaaatattcattcatttttctgt 428  Q
    ||||||||||||||||||||||||||||||||||| ||||  ||||||||||  |  |||||||||||||||||||||||||    
T  5031768 gcgggaatacttaccactatactacaacgacttctgtgtcttcttggtcgtaatatatttaaatattcattcatttttctgt 5031687  T

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Target: chr1; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 297 - 379
Target Start/End: Complemental strand, 17983340 - 17983258
Alignment:
Q  297 taaaaaagacgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 379  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17983340 taaaaaaaacgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 17983258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 298 - 377
Target Start/End: Complemental strand, 41985330 - 41985251
Alignment:
Q  298 aaaaaagacgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 377  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41985330 aaaaaagacgccgctgccggggattgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 41985251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 5032110 - 5032037
Alignment:
Q  1 cattttaattcgtaaacattgatcctaaacaacctcacacaattacaaatttttgacatatgctttgatgaatt 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5032110 cattttaattcgtaaacattgatcctaaacaacctcacacaattacaaatttttgacatatgctttgatgaatt 5032037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 306 - 379
Target Start/End: Complemental strand, 20607621 - 20607548
Alignment:
Q  306 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 379  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20607621 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 20607548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 299 - 377
Target Start/End: Original strand, 3820299 - 3820377
Alignment:
Q  299 aaaaagacgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 377  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3820299 aaaaaaacgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 3820377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 306 - 378
Target Start/End: Complemental strand, 5757870 - 5757798
Alignment:
Q  306 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 378  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5757870 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 5757798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 306 - 379
Target Start/End: Complemental strand, 20610892 - 20610819
Alignment:
Q  306 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 379  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||    
T  20610892 cgccgctgccggggatcgaacccgggtcacccgggtgacaagcgggaatacttaccactatactacaacaactt 20610819  T

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Target: chr1; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 306 - 374
Target Start/End: Original strand, 6073242 - 6073310
Alignment:
Q  306 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 374  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6073242 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggtgggaatacttaccactatactacaac 6073310  T

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Target: chr1; HSP #10
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 305 - 377
Target Start/End: Complemental strand, 41988040 - 41987968
Alignment:
Q  305 acgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 377  Q
    |||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  41988040 acgccgctgccggggatcaaacctgggtcacccgggtgacaggcgggaatacttaccactatactacaacgac 41987968  T

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Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 298 - 379
Target Start/End: Original strand, 27282655 - 27282736
Alignment:
Q  298 aaaaaagacgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 379  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27282655 aaaaaagacgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 27282736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 297 - 378
Target Start/End: Complemental strand, 36048360 - 36048279
Alignment:
Q  297 taaaaaagacgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 378  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36048360 taaaaaatacgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 36048279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 300 - 378
Target Start/End: Complemental strand, 36047126 - 36047048
Alignment:
Q  300 aaaagacgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 378  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36047126 aaaatacgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 36047048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 306 - 378
Target Start/End: Complemental strand, 44206891 - 44206819
Alignment:
Q  306 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 378  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44206891 cgccgctgccggggatcgaatccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 44206819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 4e-36; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 298 - 379
Target Start/End: Original strand, 43731576 - 43731657
Alignment:
Q  298 aaaaaagacgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 379  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43731576 aaaaaaaacgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 43731657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 306 - 379
Target Start/End: Original strand, 43748330 - 43748403
Alignment:
Q  306 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 379  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43748330 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 43748403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 298 - 378
Target Start/End: Complemental strand, 18364612 - 18364532
Alignment:
Q  298 aaaaaagacgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 378  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18364612 aaaaaaaacgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 18364532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 298 - 377
Target Start/End: Complemental strand, 27547253 - 27547174
Alignment:
Q  298 aaaaaagacgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 377  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27547253 aaaaaaaacgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 27547174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 305 - 379
Target Start/End: Original strand, 9944022 - 9944096
Alignment:
Q  305 acgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 379  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9944022 acgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 9944096  T

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Target: chr8; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 305 - 378
Target Start/End: Complemental strand, 35929318 - 35929245
Alignment:
Q  305 acgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 378  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35929318 acgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 35929245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 4e-36; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 297 - 378
Target Start/End: Original strand, 27481699 - 27481780
Alignment:
Q  297 taaaaaagacgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 378  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  27481699 taaaaaagacgccgctgccggggatcgaacccggatcacccgcgtgacaggcgggaatacttaccactatactacaacgact 27481780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 299 - 379
Target Start/End: Complemental strand, 31604775 - 31604695
Alignment:
Q  299 aaaaagacgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 379  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31604775 aaaaaaacgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 31604695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 296 - 378
Target Start/End: Original strand, 48394373 - 48394455
Alignment:
Q  296 ataaaaaagacgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 378  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48394373 ataaaaaaaacgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 48394455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 298 - 379
Target Start/End: Original strand, 41665423 - 41665504
Alignment:
Q  298 aaaaaagacgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 379  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41665423 aaaaaaaacgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 41665504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 290 - 377
Target Start/End: Complemental strand, 52044187 - 52044101
Alignment:
Q  290 aaatgaataaaaaagacgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 377  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52044187 aaataaataaaaaa-acgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 52044101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 305 - 379
Target Start/End: Original strand, 39623992 - 39624066
Alignment:
Q  305 acgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 379  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39623992 acgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 39624066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 300 - 379
Target Start/End: Original strand, 47667102 - 47667181
Alignment:
Q  300 aaaagacgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 379  Q
    |||| |||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  47667102 aaaaaacgccgttgccggggatcgaacccgggtcacttgcgtgacaggcgggaatacttaccactatactacaacgactt 47667181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 306 - 379
Target Start/End: Original strand, 39918624 - 39918697
Alignment:
Q  306 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 379  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  39918624 cgccgttgccggggatcgaacccgggtcacccgtgtgacaggcgggaatacttaccactatactacaacaactt 39918697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 306 - 379
Target Start/End: Original strand, 48402436 - 48402509
Alignment:
Q  306 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 379  Q
    ||||| |||| |||||| ||| | ||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  48402436 cgccgttgccagggatcaaactcaggtcacccgcgtgacagacgggaatacttaccactatactacaacaactt 48402509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 315 - 362
Target Start/End: Original strand, 48413993 - 48414040
Alignment:
Q  315 cggggatcgaacccgggtcacccgcgtgacaggcgggaatacttacca 362  Q
    |||||||| |||||| ||||||||||||||| ||||||||||||||||    
T  48413993 cggggatcaaacccgagtcacccgcgtgacaagcgggaatacttacca 48414040  T

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Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 295 - 379
Target Start/End: Complemental strand, 31516643 - 31516559
Alignment:
Q  295 aataaaaaagacgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 379  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31516643 aataaaaaaaacgccgctgccgaggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 31516559  T

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Target: chr7; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 306 - 385
Target Start/End: Original strand, 28040454 - 28040533
Alignment:
Q  306 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgacttctatgt 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28040454 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgacttcaatgt 28040533  T

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Target: chr7; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 306 - 379
Target Start/End: Complemental strand, 33171195 - 33171122
Alignment:
Q  306 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 379  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33171195 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 33171122  T

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Target: chr7; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 306 - 379
Target Start/End: Complemental strand, 44206169 - 44206096
Alignment:
Q  306 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 379  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44206169 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 44206096  T

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Target: chr7; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 298 - 378
Target Start/End: Original strand, 39796744 - 39796824
Alignment:
Q  298 aaaaaagacgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 378  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39796744 aaaaaatacgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 39796824  T

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Target: chr7; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 305 - 379
Target Start/End: Complemental strand, 23260748 - 23260674
Alignment:
Q  305 acgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 379  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23260748 acgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 23260674  T

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Target: chr7; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 306 - 377
Target Start/End: Complemental strand, 38538981 - 38538910
Alignment:
Q  306 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 377  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38538981 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 38538910  T

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Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 306 - 378
Target Start/End: Complemental strand, 32685055 - 32684983
Alignment:
Q  306 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 378  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32685055 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 32684983  T

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Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 305 - 378
Target Start/End: Complemental strand, 8880816 - 8880743
Alignment:
Q  305 acgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 378  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8880816 acgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 8880743  T

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Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 306 - 379
Target Start/End: Original strand, 20190346 - 20190419
Alignment:
Q  306 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 379  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  20190346 cgccgctgccggggatcgaacccgggtcacccacgtgacaggcgggaatacttaccactatactacaacgactt 20190419  T

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Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 298 - 379
Target Start/End: Original strand, 20200366 - 20200447
Alignment:
Q  298 aaaaaagacgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 379  Q
    |||||| ||||||||| |||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  20200366 aaaaaacacgccgctgtcggggatcaaacccgggtcacccgcatgacaggcaggaatacttaccactatactacaacgactt 20200447  T

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Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 306 - 378
Target Start/End: Original strand, 24267487 - 24267559
Alignment:
Q  306 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 378  Q
    ||||| ||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||    
T  24267487 cgccgttgccggggatcgaacccgggtcgtccgcgtgacaggcggaaatacttaccactatactacaacgact 24267559  T

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Target: scaffold0012 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 316 - 379
Target Start/End: Complemental strand, 184994 - 184931
Alignment:
Q  316 ggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 379  Q
    |||||| |||||||| |||||||| ||||||  || ||||||||||||||||||||||| ||||    
T  184994 ggggattgaacccggatcacccgcatgacagatggaaatacttaccactatactacaacaactt 184931  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 360
Target Start/End: Complemental strand, 30899769 - 30899737
Alignment:
Q  328 cgggtcacccgcgtgacaggcgggaatacttac 360  Q
    |||||||||||||||||||||||||||||||||    
T  30899769 cgggtcacccgcgtgacaggcgggaatacttac 30899737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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