View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1114_low_27 (Length: 446)
Name: NF1114_low_27
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 9 - 311
Target Start/End: Complemental strand, 4064300 - 4063998
Alignment:
| Q |
9 |
caataatatcgttagccttacaattccaatttcttcaaaatagattaaagacaaatgaactaatgtggtgttggtcaagtagaaggaatttctgtccaca |
108 |
Q |
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| T |
4064300 |
caataatatcgttagccttacaattccaatttcttcaaaatagattaaagacaaattaactaatgtggtgttggtcaagtagaaggaatttctgtccgca |
4064201 |
T |
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| Q |
109 |
aggagaaccgcctaaaaaacccgagttcgtatcatgatagagtcacccacatcaaaagacttgaaatctaaagnnnnnnncattattgatgaatcgtcta |
208 |
Q |
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| T |
4064200 |
gtgagaaacgcctaaaaaacccaagttcgtatcatgatagagtcacccacatcaaaagactcgaaatctaaagaaaaaaacattgttgatgaatcgtcca |
4064101 |
T |
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| Q |
209 |
aaccatgaattaatctcgtagtcggtccaaaatgtcgaagttgtgggataccatggtggactcactatcattgggtgtcaaatgccttggttacggcgat |
308 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4064100 |
aaccatgaattaatctcgtagtcggtccaaaatgtccaagttgtgggataccatggtggactcactatcattgggtgtcaaatgccttggttacggcgat |
4064001 |
T |
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| Q |
309 |
ttt |
311 |
Q |
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||| |
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| T |
4064000 |
ttt |
4063998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 357 - 417
Target Start/End: Complemental strand, 4063932 - 4063872
Alignment:
| Q |
357 |
aatatgatatcctacatgtgaagttttttatctaagcaaagagttttttccagttattttt |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4063932 |
aatatgatatcctacatgtgaagttttttatctaagcaaagagttttttccagttattttt |
4063872 |
T |
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