View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1114_low_28 (Length: 445)
Name: NF1114_low_28
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 198 - 440
Target Start/End: Complemental strand, 48565444 - 48565207
Alignment:
| Q |
198 |
atagaataagcctttggtcatcatggttagactagactgtagaaatctcggaaattcactagcggtatttaaataactcagattaaatgaaaaagactta |
297 |
Q |
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| T |
48565444 |
atagaataagcctttggtcatcatggttagactagactgtagaaatctcggaaattcactagcggtatttaa----ctcagattaaatgaaaa-gactta |
48565350 |
T |
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| Q |
298 |
tgttagttagcatgcagaagtcatcaaatgtttagtttttataagtttgcaccgcaagataatgtaaatcaatatgaactaacaaaaaataattttatta |
397 |
Q |
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| T |
48565349 |
tgttagttagcatgtagaagtcatcaaatgtttagtttttataagtttgcaccgcaagataatgtaaatcaatatgaactaacaaaaaataattttatta |
48565250 |
T |
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| Q |
398 |
aactaccaagtgaatcggtatgcatttgctttcctatgatact |
440 |
Q |
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| T |
48565249 |
aactaccaagtgaatcggtatgcatttgctttcctatgatact |
48565207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 126 - 186
Target Start/End: Complemental strand, 48565548 - 48565488
Alignment:
| Q |
126 |
agagaaaaaagagggagattgcacacacttcaaatatgatgattcaatttcccatccctca |
186 |
Q |
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| T |
48565548 |
agagaaaaaagagggagattgcacacacttcaaatatgatgattcaatttcccatacctca |
48565488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 913229 - 913263
Alignment:
| Q |
7 |
gttgttatatactatcatcgatgcctttcttcttg |
41 |
Q |
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| T |
913229 |
gttgttatatactatcatcaatgcctttcttcttg |
913263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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