View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1114_low_30 (Length: 435)
Name: NF1114_low_30
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 53744667 - 53744344
Alignment:
| Q |
1 |
caagatccttccgctggagaaactctttaccggaatcgcgctgaaggagaagactccgctgctccgacttctcctatggttgttttcatcaatgctcgta |
100 |
Q |
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| T |
53744667 |
caagatccttccgccggagaaactctttaccggaatcgcgctgaaggagaagactccgctgctccgacttctcctatggttgttttcatcaatgctcgta |
53744568 |
T |
|
| Q |
101 |
gcggcggccggcatggtcctgctcttaaagaaagactccagcaactcatgagtgaagaacaggtactcctcgctcttgctctgtaatttcaatttctgtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53744567 |
gcggcggccggcatggtcctgctcttaaagaaagactccagcaactcatgagtgaagaacaggtactcctcgctcttgctctgtaatttcaatttctgtc |
53744468 |
T |
|
| Q |
201 |
actcaacagagttgatcgtgaaattgtagttgttgttcttggatctagctaaggagattatgaaattagtgatgataagtgttgttttcaaggattgatt |
300 |
Q |
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| T |
53744467 |
agtcaacagagttgatcgtgaaattgtagttgttgttcttggatctagctaaggagattatgaaattagtgatgataagtgttgttttcaaggattgatt |
53744368 |
T |
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| Q |
301 |
gaagttcaatttgtgaattgctgc |
324 |
Q |
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|||||||||||||||||||||||| |
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| T |
53744367 |
gaagttcaatttgtgaattgctgc |
53744344 |
T |
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