View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1114_low_31 (Length: 433)

Name: NF1114_low_31
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1114_low_31
NF1114_low_31
[»] chr4 (3 HSPs)
chr4 (9-264)||(31264022-31264282)
chr4 (63-316)||(31247732-31247985)
chr4 (81-146)||(31213478-31213543)
[»] chr2 (4 HSPs)
chr2 (328-427)||(33025923-33026021)
chr2 (327-427)||(33037419-33037519)
chr2 (330-427)||(33019525-33019622)
chr2 (334-424)||(33023509-33023599)
[»] chr6 (2 HSPs)
chr6 (258-315)||(13615482-13615539)
chr6 (334-414)||(24418155-24418235)
[»] chr3 (3 HSPs)
chr3 (334-409)||(2501458-2501533)
chr3 (334-418)||(12217304-12217388)
chr3 (328-412)||(37758420-37758504)


Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 9 - 264
Target Start/End: Original strand, 31264022 - 31264282
Alignment:
Q  9 caataatatggctaagcatttgttacatacttgatttga-----tgaatttccacttctactgtgcatgatttgcgcgtttaaatgttccagatcctcct 103  Q
    |||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  31264022 caataatatggctaagcatttgttacatacttgatttgaactgatgaatttccacttctactgtgcatcatttgcgcgtttaaatgttccagatcctcct 31264121  T
Q  104 taaatatccaatgataaccacaatttttgacctccaaatgcaaaccgagaggctgctcaactacagctaccaattcaataccactaatatcatgcaatcc 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31264122 taaatatccaatgataaccacaatttttgacctccaaatgcaaaccaagaggctgctcaactacagctaccaattcaataccactaatatcatgcaatcc 31264221  T
Q  204 cttcgttatacaattcatataataattaataaattcttctttagtgaaaaaagttagcaaa 264  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  31264222 cttcgttatacaattcatataataattaataaattcttccttagtgaaaaaagttaacaaa 31264282  T

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Target: chr4; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 63 - 316
Target Start/End: Complemental strand, 31247985 - 31247732
Alignment:
Q  63 actgtgcatgatttgcgcgtttaaatgttccagatcctccttaaatatccaatgataaccacaatttttgacctccaaatgcaaaccgagaggctgctca 162  Q
    ||||| ||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||    
T  31247985 actgtacatcatttgtgggtttaaatgttccagatcctccttaaatatccaatgataaccacaattttttacctccaaatgcaaaccaaggggctgctca 31247886  T
Q  163 actacagctaccaattcaataccactaatatcatgcaatcccttcgttatacaattcatataataattaataaattcttctttagtgaaaaaagttagca 262  Q
    |||||||||  ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||  ||||||||| | ||||||    
T  31247885 actacagctgtcaattcaataccactaatatcatgcaatccctttgttatataattcatataataattaataaattcttccctagtgaaaagaattagca 31247786  T
Q  263 aaaggtgatctaactcaactgtcaccagatctttttcaagatgtatgggaataa 316  Q
    | | ||||||||| |||||||| |||||||||||| ||||||||||||||||||    
T  31247785 acaagtgatctaaatcaactgtgaccagatcttttccaagatgtatgggaataa 31247732  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 81 - 146
Target Start/End: Complemental strand, 31213543 - 31213478
Alignment:
Q  81 gtttaaatgttccagatcctccttaaatatccaatgataaccacaatttttgacctccaaatgcaa 146  Q
    |||||| || |||| ||||||||||||||||||  ||||||| |||||||||||||| ||||||||    
T  31213543 gtttaattgctccaaatcctccttaaatatccatcgataacctcaatttttgacctctaaatgcaa 31213478  T

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Target: chr2 (Bit Score: 76; Significance: 5e-35; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 328 - 427
Target Start/End: Complemental strand, 33026021 - 33025923
Alignment:
Q  328 gcgtgtttgacatgcgaagatgttttttagcgaatttgggatgagaaactaacgaattgaacgacttgcacaggcatcgaagttgaatgaggagttttac 427  Q
    ||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  33026021 gcgtgtttgacatgcgaagatgtttttaagcgaatttgg-atcagaaactaacgaattgaatgacttgcataggcatcgaagttgaatgaggagttttac 33025923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 327 - 427
Target Start/End: Complemental strand, 33037519 - 33037419
Alignment:
Q  327 cgcgtgtttgacatgcgaagatgttttttagcgaatttgggatgagaaactaacgaattgaacgacttgcacaggcatcgaagttgaatgaggagtttta 426  Q
    |||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||||||||  ||||| || || |||||||||||||||||||||||||    
T  33037519 cgcgtgtttgacatgcgaagatgtttcttagcgaatttaggatcagaaattaacgaattgatagacttacagagacatcgaagttgaatgaggagtttta 33037420  T
Q  427 c 427  Q
    |    
T  33037419 c 33037419  T

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Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 330 - 427
Target Start/End: Complemental strand, 33019622 - 33019525
Alignment:
Q  330 gtgtttgacatgcgaagatgttttttagcgaatttgggatgagaaactaacgaattgaacgacttgcacaggcatcgaagttgaatgaggagttttac 427  Q
    ||||||||||||| ||||||||||||||| ||||| |||| ||||||||| |||||||  |||||||| ||||||||||||||||| |||| ||||||    
T  33019622 gtgtttgacatgcaaagatgttttttagcaaattttggatcagaaactaatgaattgactgacttgcagaggcatcgaagttgaataaggatttttac 33019525  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 424
Target Start/End: Complemental strand, 33023599 - 33023509
Alignment:
Q  334 ttgacatgcgaagatgttttttagcgaatttgggatgagaaactaacgaattgaacgacttgcacaggcatcgaagttgaatgaggagttt 424  Q
    ||||||||||||  ||||| || ||||||  ||||| | | | |||||||||||| |||||||| || ||| ||||||||| |||||||||    
T  33023599 ttgacatgcgaaagtgtttctttgcgaatacgggatcacacattaacgaattgaaggacttgcaaagacattgaagttgaaggaggagttt 33023509  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 258 - 315
Target Start/End: Complemental strand, 13615539 - 13615482
Alignment:
Q  258 tagcaaaaggtgatctaactcaactgtcaccagatctttttcaagatgtatgggaata 315  Q
    |||||| ||||||||||| |||||||| | |||||||||||||| ||||| |||||||    
T  13615539 tagcaacaggtgatctaaatcaactgtaatcagatctttttcaacatgtacgggaata 13615482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 414
Target Start/End: Original strand, 24418155 - 24418235
Alignment:
Q  334 ttgacatgcgaagatgttttttagcgaatttgggatgagaaactaacgaattgaacgacttgcacaggcatcgaagttgaa 414  Q
    |||||| |||||| || || || ||||||||||||| ||| | ||| |||||||| |||||||| || || ||||||||||    
T  24418155 ttgacaagcgaaggtgcttgtttgcgaatttgggatcagagattaatgaattgaaggacttgcagagacagcgaagttgaa 24418235  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 409
Target Start/End: Complemental strand, 2501533 - 2501458
Alignment:
Q  334 ttgacatgcgaagatgttttttagcgaatttgggatgagaaactaacgaattgaacgacttgcacaggcatcgaag 409  Q
    ||||||| ||||||||||| || |||||||| |||| ||||| ||| ||||||||  |||| || |||||||||||    
T  2501533 ttgacatacgaagatgtttctttgcgaatttaggatcagaaattaaagaattgaagaacttacaaaggcatcgaag 2501458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 418
Target Start/End: Complemental strand, 12217388 - 12217304
Alignment:
Q  334 ttgacatgcgaagatgttttttagcgaatttgggatgagaaactaacgaattgaacgacttgcacaggcatcgaagttgaatgag 418  Q
    |||||| |||||||||||| |  || |||||||||| ||| | ||| |||||||| ||||| || ||||| ||||| ||||||||    
T  12217388 ttgacaagcgaagatgtttctctgcaaatttgggatcagagattaaagaattgaaggacttacagaggcagcgaagctgaatgag 12217304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 412
Target Start/End: Original strand, 37758420 - 37758504
Alignment:
Q  328 gcgtgtttgacatgcgaagatgttttttagcgaatttgggatgagaaactaacgaattgaacgacttgcacaggcatcgaagttg 412  Q
    ||||| ||||||| |||||||| || ||||||||||||||||   | | ||| ||||| || |||||||| |||||||| |||||    
T  37758420 gcgtggttgacatacgaagatgcttcttagcgaatttgggatccaagattaaagaattcaaggacttgcagaggcatcggagttg 37758504  T

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