View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1114_low_35 (Length: 424)

Name: NF1114_low_35
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1114_low_35
NF1114_low_35
[»] chr2 (10 HSPs)
chr2 (155-295)||(37794604-37794754)
chr2 (143-295)||(17988928-17989090)
chr2 (138-259)||(35016259-35016381)
chr2 (112-259)||(5430260-5430408)
chr2 (320-405)||(19263710-19263796)
chr2 (148-259)||(19263844-19263956)
chr2 (320-410)||(17989132-17989225)
chr2 (320-408)||(37794796-37794886)
chr2 (173-233)||(20929880-20929940)
chr2 (199-234)||(11808663-11808698)
[»] chr1 (10 HSPs)
chr1 (143-259)||(9457726-9457843)
chr1 (143-259)||(9461823-9461940)
chr1 (143-295)||(12990581-12990743)
chr1 (113-256)||(32617481-32617625)
chr1 (320-410)||(9457550-9457642)
chr1 (320-410)||(9461647-9461739)
chr1 (113-259)||(34664890-34665039)
chr1 (320-411)||(12990269-12990362)
chr1 (320-412)||(32617714-32617806)
chr1 (188-234)||(26828605-26828651)
[»] chr4 (14 HSPs)
chr4 (144-296)||(55606188-55606350)
chr4 (138-293)||(25968068-25968237)
chr4 (116-244)||(28147110-28147238)
chr4 (133-295)||(13198011-13198183)
chr4 (154-244)||(11440695-11440785)
chr4 (320-411)||(28146912-28147007)
chr4 (191-296)||(38411857-38411972)
chr4 (322-412)||(55606393-55606484)
chr4 (113-234)||(21315477-21315598)
chr4 (180-242)||(29866152-29866214)
chr4 (360-412)||(38412055-38412107)
chr4 (356-389)||(46308501-46308534)
chr4 (356-412)||(25967929-25967985)
chr4 (251-295)||(28147049-28147093)
[»] chr8 (9 HSPs)
chr8 (143-295)||(23489911-23490072)
chr8 (200-253)||(13402200-13402254)
chr8 (201-253)||(13396902-13396955)
chr8 (200-262)||(14370792-14370855)
chr8 (158-234)||(20762728-20762804)
chr8 (320-410)||(23490114-23490207)
chr8 (110-239)||(45191525-45191652)
chr8 (360-413)||(45191729-45191781)
chr8 (200-244)||(7154254-7154298)
[»] chr6 (5 HSPs)
chr6 (143-259)||(26660557-26660674)
chr6 (143-259)||(26766528-26766645)
chr6 (138-259)||(9177704-9177818)
chr6 (356-412)||(8169131-8169187)
chr6 (113-195)||(8169049-8169131)
[»] chr5 (14 HSPs)
chr5 (113-295)||(41283557-41283749)
chr5 (113-244)||(13424551-13424681)
chr5 (113-231)||(19967627-19967745)
chr5 (60-109)||(36605389-36605438)
chr5 (321-408)||(41283422-41283515)
chr5 (320-409)||(19967439-19967530)
chr5 (144-253)||(36491604-36491714)
chr5 (200-253)||(39426088-39426142)
chr5 (251-295)||(19967567-19967611)
chr5 (180-234)||(37247652-37247706)
chr5 (320-377)||(39426235-39426293)
chr5 (320-376)||(22927211-22927268)
chr5 (158-234)||(6887910-6887986)
chr5 (200-244)||(22927062-22927106)
[»] chr7 (10 HSPs)
chr7 (161-295)||(47363662-47363806)
chr7 (205-259)||(10493372-10493427)
chr7 (149-244)||(45435552-45435647)
chr7 (320-413)||(33049047-33049140)
chr7 (149-259)||(7493011-7493121)
chr7 (200-295)||(25635901-25636006)
chr7 (323-410)||(47363851-47363940)
chr7 (202-244)||(33049254-33049296)
chr7 (192-229)||(35451056-35451093)
chr7 (200-244)||(39653454-39653498)
[»] chr3 (3 HSPs)
chr3 (200-295)||(11783404-11783509)
chr3 (320-411)||(11783552-11783643)
chr3 (207-244)||(53527193-53527230)
[»] scaffold0006 (1 HSPs)
scaffold0006 (158-234)||(75596-75672)


Alignment Details
Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 155 - 295
Target Start/End: Original strand, 37794604 - 37794754
Alignment:
Q  155 atttcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtgaattaataacaacattgcacaactcttaaat-atgatagtaa 253  Q
    ||||||||||||||||||||| | |||||||||||||||||||  |||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  37794604 atttcgcgatttcggccgttatgggtgttgcgatacagattgcggttgtcgtggtgtgaattaatcacaacattgcacaactcttaaataatgatagtaa 37794703  T
Q  254 ctta---aact------agagaaagatttggagttttaaactagataagga 295  Q
    ||||   ||||      |||||||||||||||||| |||||||||||||||    
T  37794704 cttagataacttagaccagagaaagatttggagttctaaactagataagga 37794754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 143 - 295
Target Start/End: Original strand, 17988928 - 17989090
Alignment:
Q  143 gtcgcgtataggatttcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtgaattaataacaacattgcacaactcttaaa 242  Q
    |||||||| |||||||||| |||||||| |||||| |||||||||||| ||||||  |||||| ||||||||||||| |||| |||||||||||||||||    
T  17988928 gtcgcgtacaggatttcgcaatttcggctgttacgggtgttgcgatacggattgcggttgtcgaggtgtgaattaatcacaatattgcacaactcttaaa 17989027  T
Q  243 t-atgatag---------taacttaaactagagaaagatttggagttttaaactagataagga 295  Q
    | |||||||         |||||||||||||| |||||||||||||| |||||||||||||||    
T  17989028 taatgatagtaacttaaataacttaaactagaaaaagatttggagttctaaactagataagga 17989090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 138 - 259
Target Start/End: Original strand, 35016259 - 35016381
Alignment:
Q  138 tcgcagtcgcgtataggatttcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtgaattaataacaacattgcacaactc 237  Q
    |||||||| |||||||||||||||||||||||||||||   ||||||||||||| | |||  |||||||||||||||||||| |||||||| ||||||||    
T  35016259 tcgcagtcccgtataggatttcgcgatttcggccgttaaaggtgttgcgatacaaactgcggttgtcgcggtgtgaattaatcacaacattacacaactc 35016358  T
Q  238 ttaaat-atgatagtaacttaaa 259  Q
    |||||| ||||||||||||||||    
T  35016359 ttaaataatgatagtaacttaaa 35016381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 112 - 259
Target Start/End: Complemental strand, 5430408 - 5430260
Alignment:
Q  112 attttaaataacggtcgtggtcaagttcgcagtcgcgtataggatttcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgt 211  Q
    ||||||||||| ||||| |  |||  |||| |||||||||| |||||  |||||||||  ||||||  ||||||  |||||||||   ||||||||||||    
T  5430408 attttaaataatggtcgcgaacaatgtcgcggtcgcgtatatgattttacgatttcggttgttacggatgttgcattacagattgtggttgtcgcggtgt 5430309  T
Q  212 gaattaataacaacattgcacaactcttaaat-atgatagtaacttaaa 259  Q
    |||||||| |||| |||||||||||||||||| ||||||||||| ||||    
T  5430308 gaattaatcacaatattgcacaactcttaaataatgatagtaacataaa 5430260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 320 - 405
Target Start/End: Complemental strand, 19263796 - 19263710
Alignment:
Q  320 tgattttcatctatctcaattgaagaaa-atctagagtctatgtctattgtcatgaacaacacttttttgcggctgtaacggtgttt 405  Q
    ||||||||||||||||||||||||  || |||| || ||||| ||||||||||||||| ||| ||||||||||| ||||||||||||    
T  19263796 tgattttcatctatctcaattgaaacaatatcttgattctatatctattgtcatgaacgacagttttttgcggccgtaacggtgttt 19263710  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 148 - 259
Target Start/End: Complemental strand, 19263956 - 19263844
Alignment:
Q  148 gtataggatttcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtgaattaataacaacattgcacaactcttaaat-atg 246  Q
    ||||| ||||| ||||||||||  |||| | |||||||||||   |||||  |||| ||| ||||||||||| |||||||||||||| |||||||| |||    
T  19263956 gtatatgattttgcgatttcggttgttatgggtgttgcgatatcaattgcggttgttgcgctgtgaattaatcacaacattgcacaattcttaaataatg 19263857  T
Q  247 atagtaacttaaa 259  Q
    |||||||| ||||    
T  19263856 atagtaacataaa 19263844  T

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Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 320 - 410
Target Start/End: Original strand, 17989132 - 17989225
Alignment:
Q  320 tgattttcatctatctcaattgaagaaaa---tctagagtctatgtctattgtcatgaacaacacttttttgcggctgtaacggtgtttcgtcg 410  Q
    ||||||||||| |||||||||||| ||||   || ||| |||||||||||| ||||||||  |  ||||||||||| |||||||||||||||||    
T  17989132 tgattttcatcgatctcaattgaaaaaaaaaatccagattctatgtctattatcatgaacggctgttttttgcggccgtaacggtgtttcgtcg 17989225  T

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Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 320 - 408
Target Start/End: Original strand, 37794796 - 37794886
Alignment:
Q  320 tgattttcatctatctcaattgaagaaa-atctagagtctatgtctattgtcatgaacaaca-cttttttgcggctgtaacggtgtttcgt 408  Q
    |||||||| ||||||||||||||| ||| ||| ||| ||||||||| ||||||||||| |||  |||||||| || |||||||||||||||    
T  37794796 tgattttcttctatctcaattgaaaaaatatccagattctatgtcttttgtcatgaacgacattttttttgcagccgtaacggtgtttcgt 37794886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 20929940 - 20929880
Alignment:
Q  173 ttacgagtgttgcgatacagattgccattgtcgcggtgtgaattaataacaacattgcaca 233  Q
    ||||||||| |||||||||||| ||  |||||||||||||||||||| |||||| ||||||    
T  20929940 ttacgagtgctgcgatacagatcgcggttgtcgcggtgtgaattaatcacaacaatgcaca 20929880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 234
Target Start/End: Complemental strand, 11808698 - 11808663
Alignment:
Q  199 attgtcgcggtgtgaattaataacaacattgcacaa 234  Q
    ||||||||||||||||||||| ||||||||||||||    
T  11808698 attgtcgcggtgtgaattaattacaacattgcacaa 11808663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 8e-34; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 143 - 259
Target Start/End: Complemental strand, 9457843 - 9457726
Alignment:
Q  143 gtcgcgtataggatttcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtgaattaataacaacattgcacaactcttaaa 242  Q
    ||||||||||||||||| ||||||||| ||||| | |||||||||||| ||||||  |||| ||||||||||||||| ||||||||||||||||||||||    
T  9457843 gtcgcgtataggatttcacgatttcggtcgttatgggtgttgcgatacggattgcggttgttgcggtgtgaattaatcacaacattgcacaactcttaaa 9457744  T
Q  243 t-atgatagtaacttaaa 259  Q
    | ||||||||||||||||    
T  9457743 taatgatagtaacttaaa 9457726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 143 - 259
Target Start/End: Complemental strand, 9461940 - 9461823
Alignment:
Q  143 gtcgcgtataggatttcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtgaattaataacaacattgcacaactcttaaa 242  Q
    ||||||||||||||||| ||||||||| ||||| | |||||||||||| ||||||  |||| ||||||||||||||| ||||||||||||||||||||||    
T  9461940 gtcgcgtataggatttcacgatttcggtcgttatgggtgttgcgatacggattgcggttgttgcggtgtgaattaatcacaacattgcacaactcttaaa 9461841  T
Q  243 t-atgatagtaacttaaa 259  Q
    | ||||||||||||||||    
T  9461840 taatgatagtaacttaaa 9461823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 143 - 295
Target Start/End: Complemental strand, 12990743 - 12990581
Alignment:
Q  143 gtcgcgtataggatttcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtgaattaataacaacattgcacaactcttaaa 242  Q
    |||||||||||||||||  ||||| |||||||||  |||||| ||||  ||||||  |||||||||||||||||| | ||||||||||||||||||||||    
T  12990743 gtcgcgtataggatttcctgattttggccgttacatgtgttgggataaggattgcagttgtcgcggtgtgaattagtcacaacattgcacaactcttaaa 12990644  T
Q  243 t-atgatag---------taacttaaactagagaaagatttggagttttaaactagataagga 295  Q
    | |||||||         |||||||||||||||||||||||| |||| |||||||||||||||    
T  12990643 taatgatagtaacttaaataacttaaactagagaaagatttgaagttctaaactagataagga 12990581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 113 - 256
Target Start/End: Original strand, 32617481 - 32617625
Alignment:
Q  113 ttttaaataacggtcgtggtcaagttcgcagtcgcgtataggatttcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtg 212  Q
    ||||||| |||||||| ||| ||| |||| || || || | ||||| ||||||||| |||||||| |||||||||||  ||||||  ||||||||||||     
T  32617481 ttttaaaaaacggtcgcggttaaggtcgcggttgcatacatgattttgcgatttcgaccgttacgggtgttgcgatatggattgcggttgtcgcggtgta 32617580  T
Q  213 aattaataacaacattgcacaactcttaaat-atgatagtaactt 256  Q
    ||||||| ||||||||||||||||||||||| | |||||||||||    
T  32617581 aattaatcacaacattgcacaactcttaaataacgatagtaactt 32617625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 320 - 410
Target Start/End: Complemental strand, 9457642 - 9457550
Alignment:
Q  320 tgattttcatctatctcaattgaagaaaat--ctagagtctatgtctattgtcatgaacaacacttttttgcggctgtaacggtgtttcgtcg 410  Q
    ||||||| |||||||||||||||| |||||  || || |||||||||||||||||||||  || ||||||||||||||||||| |||||||||    
T  9457642 tgatttttatctatctcaattgaaaaaaatatctggattctatgtctattgtcatgaacggcatttttttgcggctgtaacggcgtttcgtcg 9457550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 320 - 410
Target Start/End: Complemental strand, 9461739 - 9461647
Alignment:
Q  320 tgattttcatctatctcaattgaagaaaat--ctagagtctatgtctattgtcatgaacaacacttttttgcggctgtaacggtgtttcgtcg 410  Q
    ||||||| |||||||||||||||| |||||  || || |||||||||||||||||||||  || ||||||||||||||||||| |||||||||    
T  9461739 tgatttttatctatctcaattgaaaaaaatatctggattctatgtctattgtcatgaacggcatttttttgcggctgtaacggcgtttcgtcg 9461647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 113 - 259
Target Start/End: Complemental strand, 34665039 - 34664890
Alignment:
Q  113 ttttaaataacggtcgtggtcaagttcgcagtcgcgtataggatttcgcg--atttcggccgttacgagtgttgcgatacagattgccattgtcgcggtg 210  Q
    ||||||||||| ||||| |||||| || | |||||||||||||||| |||  |||||||  ||||||  ||||||  ||  |||||   ||||| ||||     
T  34665039 ttttaaataacagtcgtagtcaaggtcaccgtcgcgtataggattttgcgcaatttcggttgttacggatgttgcattatggattgtggttgtcacggta 34664940  T
Q  211 tgaattaataacaacattgcacaactcttaaat-atgatagtaacttaaa 259  Q
    ||||||||| |||||||||||||||| |||||| ||||||||||| ||||    
T  34664939 tgaattaattacaacattgcacaacttttaaataatgatagtaacgtaaa 34664890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 320 - 411
Target Start/End: Complemental strand, 12990362 - 12990269
Alignment:
Q  320 tgattttcatctatctcaattgaagaaaatct--agagtctatgtctattgtcatgaacaacacttttttgcggctgtaacggtgtttcgtcgc 411  Q
    ||||||||||| ||||||| || | ||||| |  ||| ||||||||||||||||| ||| ||| ||||||| |||||||||||| |||||||||    
T  12990362 tgattttcatcgatctcaactgcaaaaaatatccagattctatgtctattgtcataaacgacaattttttgtggctgtaacggtatttcgtcgc 12990269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 320 - 412
Target Start/End: Original strand, 32617714 - 32617806
Alignment:
Q  320 tgattttcatctatctcaattgaagaaa-atctagagtctatgtctattgtcatgaacaacacttttttgcggctgtaacggtgtttcgtcgcg 412  Q
    |||||||||||||||||||||||| ||| | |  || |||||||||||||||||||||  || || |||| ||| |||||||||||||||||||    
T  32617714 tgattttcatctatctcaattgaaaaaatacccggattctatgtctattgtcatgaactgcatttctttg-ggccgtaacggtgtttcgtcgcg 32617806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 234
Target Start/End: Complemental strand, 26828651 - 26828605
Alignment:
Q  188 tacagattgccattgtcgcggtgtgaattaataacaacattgcacaa 234  Q
    |||||||||  ||||||||||||| ||||||| ||||||||||||||    
T  26828651 tacagattgttattgtcgcggtgtaaattaatcacaacattgcacaa 26828605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 5e-32; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 144 - 296
Target Start/End: Original strand, 55606188 - 55606350
Alignment:
Q  144 tcgcgtataggatttcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtgaattaataacaacattgcacaactcttaaat 243  Q
    |||| |||||||||| |||||||||  ||||||| ||||||||||||||||| |  |||||||  ||||||||||| |||||||||||||||||||||||    
T  55606188 tcgcatataggattttgcgatttcgatcgttacgggtgttgcgatacagattacggttgtcgcattgtgaattaatcacaacattgcacaactcttaaat 55606287  T
Q  244 -atgatag---------taacttaaactagagaaagatttggagttttaaactagataaggaa 296  Q
     |||||||         ||||||||||||||||||||||||||||| ||||||| ||||||||    
T  55606288 aatgatagtaacttaaataacttaaactagagaaagatttggagttctaaactatataaggaa 55606350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 138 - 293
Target Start/End: Complemental strand, 25968237 - 25968068
Alignment:
Q  138 tcgcagtcgcgtataggatttcg----cgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtgaattaataacaacattgcaca 233  Q
    |||| ||||||||||||||||||    ||||||||||||||| | ||||||| |||| ||||||  |||||||||||||||||||| |||||||||||||    
T  25968237 tcgcggtcgcgtataggatttcgaatgcgatttcggccgttatgggtgttgctatacggattgcggttgtcgcggtgtgaattaatcacaacattgcaca 25968138  T
Q  234 actcttaaat-atgatag---------taacttaaactagagaaagatttggagttttaaactagataag 293  Q
    |||||||||| |||||||         ||||||||||||||||||||| ||  ||| |||||||||||||    
T  25968137 actcttaaataatgatagtcacttacataacttaaactagagaaagatctgacgttctaaactagataag 25968068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 116 - 244
Target Start/End: Complemental strand, 28147238 - 28147110
Alignment:
Q  116 taaataacggtcgtggtcaagttcgcagtcgcgtataggatttcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtgaat 215  Q
    |||||||||||   ||||| | |||| ||| | |||||||||| || ||||||||| ||||| ||||| ||||||||| |||  ||||||||||||||||    
T  28147238 taaataacggtaacggtcacggtcgcggtcacatataggattttgcaatttcggccattacgggtgttacgatacagagtgcggttgtcgcggtgtgaat 28147139  T
Q  216 taataacaacattgcacaactcttaaata 244  Q
    |||| ||||||||||||||||||||||||    
T  28147138 taatcacaacattgcacaactcttaaata 28147110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 133 - 295
Target Start/End: Original strand, 13198011 - 13198183
Alignment:
Q  133 caagttcgcagtcgcgtataggatttcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtgaattaataacaacattgcac 232  Q
    |||| |||| ||||||||||||||||| ||||||||||   || | |||||||| ||  |||||  ||||||||||||||||||||| ||||||||||||    
T  13198011 caagatcgcggtcgcgtataggatttcacgatttcggcatgtatgggtgttgcgttaaggattgtgattgtcgcggtgtgaattaatcacaacattgcac 13198110  T
Q  233 aactcttaaa-tatgatag---------taacttaaactagagaaagatttggagttttaaactagataagga 295  Q
    ||||||||||  ||||| |         |||||||||||||| |||||||||||||| |||| ||||||||||    
T  13198111 aactcttaaacaatgatcgtaactttgataacttaaactagacaaagatttggagttctaaattagataagga 13198183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 154 - 244
Target Start/End: Complemental strand, 11440785 - 11440695
Alignment:
Q  154 gatttcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtgaattaataacaacattgcacaactcttaaata 244  Q
    |||||| |||||||||| ||||||| ||||||| ||  |||||   |||||||||||||||||||| |||||||||  |||||||||||||    
T  11440785 gatttcacgatttcggctgttacgaatgttgcgttatggattgttgttgtcgcggtgtgaattaatcacaacattgttcaactcttaaata 11440695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 320 - 411
Target Start/End: Complemental strand, 28147007 - 28146912
Alignment:
Q  320 tgattttcatctatctcaattgaagaaa-atctagagtctatgtctattgtcatgaacaac---acttttttgcggctgtaacggtgtttcgtcgc 411  Q
    |||||||||||||||||||||||| ||| ||| ||| |||||||||||||||||||||  |     ||||||||||| ||||||||||||||||||    
T  28147007 tgattttcatctatctcaattgaaaaaatatccagattctatgtctattgtcatgaacggccttttttttttgcggccgtaacggtgtttcgtcgc 28146912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 191 - 296
Target Start/End: Original strand, 38411857 - 38411972
Alignment:
Q  191 agattgccattgtcgcggtgtgaattaataacaacattgcacaactcttaaata-tgatag---------taacttaaactagagaaagatttggagttt 280  Q
    |||||||  |||||||| ||||||||||| |||||||||||||||| ||||| | ||||||         |||||||| ||||||| ||||||||||||     
T  38411857 agattgcggttgtcgcgctgtgaattaatcacaacattgcacaacttttaaacaatgataggaatgtaaataacttaacctagagatagatttggagttc 38411956  T
Q  281 taaactagataaggaa 296  Q
    ||||||||||||||||    
T  38411957 taaactagataaggaa 38411972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 322 - 412
Target Start/End: Original strand, 55606393 - 55606484
Alignment:
Q  322 attttcatctatctcaattgaagaaa-atctagagtctatgtctattgtcatgaacaacacttttttgcggctgtaacggtgtttcgtcgcg 412  Q
    |||||||||||| ||||||||| ||| || | || || |||||||||||||||||||  | ||||||||||| ||||||||||||| |||||    
T  55606393 attttcatctatatcaattgaaaaaatatttggattccatgtctattgtcatgaacagaatttttttgcggccgtaacggtgtttcatcgcg 55606484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 234
Target Start/End: Original strand, 21315477 - 21315598
Alignment:
Q  113 ttttaaataacggtcgtggtcaagttcgcagtcgcgtataggatttcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtg 212  Q
    |||||||||||||||  ||||  | |||| |||||||  ||| |||||||||||| || ||||||  ||||||  |||||||| |  | |||||||||||    
T  21315477 ttttaaataacggtcacggtctcggtcgcggtcgcgttaaggttttcgcgatttcagctgttacggatgttgcattacagattacggtcgtcgcggtgtg 21315576  T
Q  213 aattaataacaacattgcacaa 234  Q
    ||||||| |||||| |||||||    
T  21315577 aattaatcacaacaatgcacaa 21315598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 29866214 - 29866152
Alignment:
Q  180 tgttgcgatacagattgccattgtcgcggtgtgaattaataacaacattgcacaactcttaaa 242  Q
    ||||||| |||||||||   |||||| ||||||||||||| |||||||||||||| |||||||    
T  29866214 tgttgcgttacagattgtggttgtcgtggtgtgaattaatcacaacattgcacaaatcttaaa 29866152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 412
Target Start/End: Original strand, 38412055 - 38412107
Alignment:
Q  360 tgtctattgtcatgaacaacacttttttgcggctgtaacggtgtttcgtcgcg 412  Q
    ||||||||||||||||| ||| | ||||||||| |||| ||||||||||||||    
T  38412055 tgtctattgtcatgaacgacattcttttgcggccgtaatggtgtttcgtcgcg 38412107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 389
Target Start/End: Original strand, 46308501 - 46308534
Alignment:
Q  356 tctatgtctattgtcatgaacaacacttttttgc 389  Q
    ||||||||||||||||||||||||| ||||||||    
T  46308501 tctatgtctattgtcatgaacaacaattttttgc 46308534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 412
Target Start/End: Complemental strand, 25967985 - 25967929
Alignment:
Q  356 tctatgtctattgtcatgaacaacacttttttgcggctgtaacggtgtttcgtcgcg 412  Q
    ||||||||| ||||||||||   || |||||||| || |||||||||||||||||||    
T  25967985 tctatgtctgttgtcatgaatggcaattttttgcagccgtaacggtgtttcgtcgcg 25967929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 28147093 - 28147049
Alignment:
Q  251 taacttaaactagagaaagatttggagttttaaactagataagga 295  Q
    ||||||||||||| |||||||||||| || |||| ||||||||||    
T  28147093 taacttaaactagggaaagatttggaattctaaattagataagga 28147049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 143 - 295
Target Start/End: Original strand, 23489911 - 23490072
Alignment:
Q  143 gtcgcgtataggatttcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtgaattaataacaacattgcacaactcttaaa 242  Q
    |||||||||||||||| |||||| ||||||||| | |||||||| ||| ||| ||  |||| ||||||||||||||| ||||||||| ||||||||||||    
T  23489911 gtcgcgtataggattttgcgattccggccgttatgggtgttgcggtacggat-gcggttgttgcggtgtgaattaatcacaacattgtacaactcttaaa 23490009  T
Q  243 ta-tgatagtaact---------taaactagagaaagatttggagttttaaactagataagga 295  Q
    || |||||||||||         |||||||||||||||||||||||| |||||||||||||||    
T  23490010 tactgatagtaacttagacaacataaactagagaaagatttggagttctaaactagataagga 23490072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 200 - 253
Target Start/End: Complemental strand, 13402254 - 13402200
Alignment:
Q  200 ttgtcgcggtgtgaattaataacaacattgcacaactcttaaat-atgatagtaa 253  Q
    |||||||||||||||||||| |||||||| |||||||||||||| ||||||||||    
T  13402254 ttgtcgcggtgtgaattaatcacaacattacacaactcttaaataatgatagtaa 13402200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 13396955 - 13396902
Alignment:
Q  201 tgtcgcggtgtgaattaataacaacattgcacaactcttaaat-atgatagtaa 253  Q
    ||||||||||||||||||| |||||||| |||||||||||||| ||||||||||    
T  13396955 tgtcgcggtgtgaattaatcacaacattacacaactcttaaataatgatagtaa 13396902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 200 - 262
Target Start/End: Complemental strand, 14370855 - 14370792
Alignment:
Q  200 ttgtcgcggtgtgaattaataacaacattgcacaactcttaaat-atgatagtaacttaaacta 262  Q
    |||||| ||||||||||||| ||||||||||||||||||||  | |||||| ||||||||||||    
T  14370855 ttgtcgtggtgtgaattaatcacaacattgcacaactcttacttaatgataataacttaaacta 14370792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 234
Target Start/End: Original strand, 20762728 - 20762804
Alignment:
Q  158 tcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtgaattaataacaacattgcacaa 234  Q
    ||||||||||||| ||||||  ||||||| ||| ||||||  | |||||||||||||||||| | |||| |||||||    
T  20762728 tcgcgatttcggctgttacggatgttgcgttactgattgcggtcgtcgcggtgtgaattaatcagaacaatgcacaa 20762804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 410
Target Start/End: Original strand, 23490114 - 23490207
Alignment:
Q  320 tgattttcatctatctcaattgaagaaa-atctagagtctatgtctattgtcatgaacaaca--cttttttgcggctgtaacggtgtttcgtcg 410  Q
    |||||||||||||||||||||||| ||| |||  ||  ||||||||||||||||||||  ||   ||||||||||| |||||  ||||||||||    
T  23490114 tgattttcatctatctcaattgaaaaaatatccggatgctatgtctattgtcatgaacggcatttttttttgcggccgtaacaatgtttcgtcg 23490207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 239
Target Start/End: Original strand, 45191525 - 45191652
Alignment:
Q  110 aaattttaaataacggtcgtggtcaagttcgcagtcgcgtataggatttcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggt 209  Q
    |||||||||||||| |||||| | ||| | |  |||||||||||||||||  |||||||   ||||| | ||||| | ||||||||||  |||||| |||    
T  45191525 aaattttaaataacagtcgtgcttaaggttgg-gtcgcgtataggatttcatgatttcgaatgttactaatgttg-gttacagattgcggttgtcgtggt 45191622  T
Q  210 gtgaattaataacaacattgcacaactctt 239  Q
    |||| ||||| || || |||||||||||||    
T  45191623 gtgagttaatcactacgttgcacaactctt 45191652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 413
Target Start/End: Original strand, 45191729 - 45191781
Alignment:
Q  360 tgtctattgtcatgaacaacacttttttgcggctgtaacggtgtttcgtcgcga 413  Q
    |||| |||||||||||| ||| ||||| ||||| ||||||||||||||||||||    
T  45191729 tgtccattgtcatgaacgaca-tttttggcggccgtaacggtgtttcgtcgcga 45191781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 244
Target Start/End: Original strand, 7154254 - 7154298
Alignment:
Q  200 ttgtcgcggtgtgaattaataacaacattgcacaactcttaaata 244  Q
    |||||| | ||||||||||| |||||||||||||| |||||||||    
T  7154254 ttgtcgtgatgtgaattaatcacaacattgcacaagtcttaaata 7154298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 5e-29; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 143 - 259
Target Start/End: Original strand, 26660557 - 26660674
Alignment:
Q  143 gtcgcgtataggatttcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtgaattaataacaacattgcacaactcttaaa 242  Q
    |||| |||||||||||| | ||||||||||||||||||||||||||||  |||||  ||||| |||||||||||||| ||||||||||||||||||||||    
T  26660557 gtcgagtataggatttcacaatttcggccgttacgagtgttgcgatacgaattgcggttgtcacggtgtgaattaatcacaacattgcacaactcttaaa 26660656  T
Q  243 t-atgatagtaacttaaa 259  Q
    | |  |||||||||||||    
T  26660657 tcacaatagtaacttaaa 26660674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 143 - 259
Target Start/End: Original strand, 26766528 - 26766645
Alignment:
Q  143 gtcgcgtataggatttcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtgaattaataacaacattgcacaactcttaaa 242  Q
    |||| |||||||||||| | ||||||||||||||||||||||||||||  |||||  ||||| |||||||||||||| ||||||||||||||||||||||    
T  26766528 gtcgagtataggatttcacaatttcggccgttacgagtgttgcgatacgaattgcggttgtcacggtgtgaattaatcacaacattgcacaactcttaaa 26766627  T
Q  243 t-atgatagtaacttaaa 259  Q
    | |  |||||||||||||    
T  26766628 tcacaatagtaacttaaa 26766645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 138 - 259
Target Start/End: Complemental strand, 9177818 - 9177704
Alignment:
Q  138 tcgcagtcgcgtataggatttcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtgaattaataacaacattgcacaactc 237  Q
    |||| ||||||||||||||||| |  ||||||| |||||| |||||| ||||| ||||||       ||||||||||||||| |||||||||||||||||    
T  9177818 tcgcggtcgcgtataggatttcacagtttcggctgttacgggtgttg-gatactgattgc-------gcggtgtgaattaatcacaacattgcacaactc 9177727  T
Q  238 ttaaat-atgatagtaacttaaa 259  Q
    || ||| ||||||||||| ||||    
T  9177726 ttgaataatgatagtaacgtaaa 9177704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 356 - 412
Target Start/End: Original strand, 8169131 - 8169187
Alignment:
Q  356 tctatgtctattgtcatgaacaacacttttttgcggctgtaacggtgtttcgtcgcg 412  Q
    |||||||||||||||||||||  || ||||||| ||| |||||||||||||||||||    
T  8169131 tctatgtctattgtcatgaacggcatttttttgtggccgtaacggtgtttcgtcgcg 8169187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 195
Target Start/End: Original strand, 8169049 - 8169131
Alignment:
Q  113 ttttaaataacggtcgtggtcaagttcgcagtcgcgtataggatttcgcgatttcggccgttacgagtgttgcgatacagatt 195  Q
    |||||||||||| ||  ||||||| | || || ||||||||||||||  |||||||||| ||||| |||||| ||||| ||||    
T  8169049 ttttaaataacgatcccggtcaaggtagcggttgcgtataggatttcatgatttcggcccttacgggtgttgtgatacggatt 8169131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 113 - 295
Target Start/End: Complemental strand, 41283749 - 41283557
Alignment:
Q  113 ttttaaataacggtcgtggtcaagttcgcagtcgcgtataggatttcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtg 212  Q
    |||||||||||||||||||||||| |||| ||||| |||||||||||| |||||||||| ||  | |||||| ||||| || |    |||||| ||||||    
T  41283749 ttttaaataacggtcgtggtcaaggtcgcggtcgcttataggatttcgtgatttcggccattttgggtgttgtgatacggagtatggttgtcgtggtgtg 41283650  T
Q  213 aattaataacaacattgcacaactcttaaat-atgatag---------taacttaaactagagaaagatttggagttttaaactagataagga 295  Q
    ||||||| |||||||||||||||| || ||| | |||||         |||||||||||||||||||||||| |||| |||||||||||||||    
T  41283649 aattaatcacaacattgcacaacttttgaataaagatagtaacataaataacttaaactagagaaagatttgaagttctaaactagataagga 41283557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 113 - 244
Target Start/End: Original strand, 13424551 - 13424681
Alignment:
Q  113 ttttaaataacggtcgtggtcaagttcgcagtcgcgtataggatttcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtg 212  Q
    |||||||||||||||| ||||||| ||||||||||||||| ||||| || |||||| |  ||| | |||| || ||||||||||   |||||| ||||||    
T  13424551 ttttaaataacggtcgcggtcaaggtcgcagtcgcgtataagattttgcaatttcgactcttatgggtgtggc-atacagattgtagttgtcgtggtgtg 13424649  T
Q  213 aattaataacaacattgcacaactcttaaata 244  Q
    ||||||| ||||||||||||||||||||||||    
T  13424650 aattaatcacaacattgcacaactcttaaata 13424681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 113 - 231
Target Start/End: Complemental strand, 19967745 - 19967627
Alignment:
Q  113 ttttaaataacggtcgtggtcaagttcgcagtcgcgtataggatttcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtg 212  Q
    ||||||||||||||||  |||||| |||  || ||| |||||||||||||||||||||||||| | ||||||| | || ||||||  ||||||| ||| |    
T  19967745 ttttaaataacggtcgcagtcaaggtcgaggttgcggataggatttcgcgatttcggccgttatgggtgttgcaacactgattgcggttgtcgcagtgag 19967646  T
Q  213 aattaataacaacattgca 231  Q
    ||||||| |||||||||||    
T  19967645 aattaatcacaacattgca 19967627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 60 - 109
Target Start/End: Original strand, 36605389 - 36605438
Alignment:
Q  60 aaccccatgattacacaatacatgaaaattatgaactaaaacactatcat 109  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  36605389 aaccccatgataacacaatacatgaaaattatcaactaaaacactatcat 36605438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 321 - 408
Target Start/End: Complemental strand, 41283515 - 41283422
Alignment:
Q  321 gattttcatctatctcaattgaagaaaa------tctagagtctatgtctattgtcatgaacaacacttttttgcggctgtaacggtgtttcgt 408  Q
    ||||||||||||||||||||||||||||      ||| || | ||||||||||||||||| | ||| ||||||||||| |||||| ||||||||    
T  41283515 gattttcatctatctcaattgaagaaaaaaaatatctggattttatgtctattgtcatgagcgacaattttttgcggccgtaacgatgtttcgt 41283422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 320 - 409
Target Start/End: Complemental strand, 19967530 - 19967439
Alignment:
Q  320 tgattttcatctatctcaattgaagaaa-atctagagtctatgtctattgtcatgaacaacactttttt-gcggctgtaacggtgtttcgtc 409  Q
    |||||||||| ||||||||||||| ||| |||  || ||||||||| ||||| ||||||||| |||||| ||||| ||||| ||||||||||    
T  19967530 tgattttcatatatctcaattgaaaaaatatccggattctatgtctgttgtcgtgaacaacattttttttgcggccgtaacagtgtttcgtc 19967439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 144 - 253
Target Start/End: Complemental strand, 36491714 - 36491604
Alignment:
Q  144 tcgcgtataggatttcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtgaattaataacaacattgcacaactcttaaat 243  Q
    ||||||||||||||| ||||||||  | ||||||  ||||||  ||| |||| |  ||||| |||||||||||||| | ||||||||| || ||||||||    
T  36491714 tcgcgtataggattttgcgatttcaactgttacggatgttgcactacggattacggttgtcacggtgtgaattaatcataacattgcaaaattcttaaat 36491615  T
Q  244 -atgatagtaa 253  Q
     ||||||||||    
T  36491614 gatgatagtaa 36491604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 39426088 - 39426142
Alignment:
Q  200 ttgtcgcggtgtgaattaataacaacattgcacaactcttaaata-tgatagtaa 253  Q
    |||||||||||||||||||| ||||||||||||||||| || ||| |||||||||    
T  39426088 ttgtcgcggtgtgaattaattacaacattgcacaactcatacatattgatagtaa 39426142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 19967611 - 19967567
Alignment:
Q  251 taacttaaactagagaaagatttggagttttaaactagataagga 295  Q
    |||||||||||| |||||||||||||||| ||||||||| |||||    
T  19967611 taacttaaactaaagaaagatttggagttctaaactagacaagga 19967567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 37247706 - 37247652
Alignment:
Q  180 tgttgcgatacagattgccattgtcgcggtgtgaattaataacaacattgcacaa 234  Q
    ||||||| |||||||||   |||||||||||||||||||| |||||| |||||||    
T  37247706 tgttgcgttacagattgtggttgtcgcggtgtgaattaatcacaacaatgcacaa 37247652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 377
Target Start/End: Original strand, 39426235 - 39426293
Alignment:
Q  320 tgattttcatctatctcaattgaagaaa-atctagagtctatgtctattgtcatgaaca 377  Q
    |||||||||||||||| ||||||| ||| || | || ||||||||||||||||||||||    
T  39426235 tgattttcatctatcttaattgaaaaaatatttggattctatgtctattgtcatgaaca 39426293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 376
Target Start/End: Original strand, 22927211 - 22927268
Alignment:
Q  320 tgattttcatctatctcaattgaagaaa-atctagagtctatgtctattgtcatgaac 376  Q
    |||||||||||||||||||||||| ||| |||  || | |||||||||||||||||||    
T  22927211 tgattttcatctatctcaattgaaaaaatatccggattttatgtctattgtcatgaac 22927268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 234
Target Start/End: Original strand, 6887910 - 6887986
Alignment:
Q  158 tcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtgaattaataacaacattgcacaa 234  Q
    ||||||||||||| ||||||  ||||||  ||| |||||| ||  |||||||||||||| || |||||| |||||||    
T  6887910 tcgcgatttcggctgttacggatgttgctttactgattgcgatcttcgcggtgtgaattgatcacaacaatgcacaa 6887986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 244
Target Start/End: Original strand, 22927062 - 22927106
Alignment:
Q  200 ttgtcgcggtgtgaattaataacaacattgcacaactcttaaata 244  Q
    ||||||||  |||||||||| |||||||||| |||||||||||||    
T  22927062 ttgtcgcgacgtgaattaatcacaacattgcccaactcttaaata 22927106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 161 - 295
Target Start/End: Original strand, 47363662 - 47363806
Alignment:
Q  161 cgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtgaattaataacaacattgcacaactcttaaat-atgat---------ag 250  Q
    ||||||| ||||||||| ||||||||||| | |||||  |||||  ||||||||||||| | |||||||||||| |||||||| |||||         |     
T  47363662 cgatttcagccgttacgggtgttgcgatataaattgcggttgtcttggtgtgaattaatcaaaacattgcacaagtcttaaataatgataataacttaaa 47363761  T
Q  251 taacttaaactagagaaagatttggagttttaaactagataagga 295  Q
    |||||||||||||||||||||||| |||| |||||||||||||||    
T  47363762 taacttaaactagagaaagatttgaagttctaaactagataagga 47363806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 205 - 259
Target Start/End: Original strand, 10493372 - 10493427
Alignment:
Q  205 gcggtgtgaattaataacaacattgcacaactcttaaat-atgatagtaacttaaa 259  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||    
T  10493372 gcggtgtgaattaatcacaacattgcacaactcttaaataatgatagtaacgtaaa 10493427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 149 - 244
Target Start/End: Complemental strand, 45435647 - 45435552
Alignment:
Q  149 tataggatttcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtgaattaataacaacattgcacaactcttaaata 244  Q
    |||||||||| | |||||| ||  |||| | ||||| | |||| |||||  || |||||||||||||||||||||| |||||||||||||||||||    
T  45435647 tataggattttgtgatttcagcttttacaaatgttgtgttacacattgcagttatcgcggtgtgaattaataacaatattgcacaactcttaaata 45435552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 320 - 413
Target Start/End: Complemental strand, 33049140 - 33049047
Alignment:
Q  320 tgattttcatctatctcaattgaagaaaatctagagtctatgtctattgtcatgaacaacacttttttgcggctgtaacggtgtttcgtcgcga 413  Q
    ||||||||||| |||||||||||| || |    || ||| ||||||||||||||||||||| ||| ||| ||||| ||||||||||| ||||||    
T  33049140 tgattttcatccatctcaattgaaaaataatgggattctctgtctattgtcatgaacaacattttgttgtggctgcaacggtgtttcctcgcga 33049047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 259
Target Start/End: Original strand, 7493011 - 7493121
Alignment:
Q  149 tataggatttcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtgaattaataacaacattgcacaactcttaaat-atga 247  Q
    |||||||||||| |||||| |  |||||| ||||| |||| | |||||   || || |||||||||||||| |||||||| |||||||||||||| ||||    
T  7493011 tataggatttcgtgatttcagttgttacgggtgtt-cgattcggattgtggttatcacggtgtgaattaatcacaacattacacaactcttaaataatga 7493109  T
Q  248 tagtaacttaaa 259  Q
    ||||||| ||||    
T  7493110 tagtaacgtaaa 7493121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 200 - 295
Target Start/End: Original strand, 25635901 - 25636006
Alignment:
Q  200 ttgtcgcggtgtgaattaataacaacattgcacaactcttaaat-atgat---------agtaacttaaactagagaaagatttggagttttaaactaga 289  Q
    |||| ||||||||||||||| ||||||||||||| ||||||||| |||||         | |||||||||||| ||| |||||||||||| |||||||||    
T  25635901 ttgttgcggtgtgaattaatcacaacattgcacacctcttaaataatgataataatgtaaataacttaaactaaagatagatttggagttctaaactaga 25636000  T
Q  290 taagga 295  Q
     |||||    
T  25636001 caagga 25636006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 323 - 410
Target Start/End: Original strand, 47363851 - 47363940
Alignment:
Q  323 ttttcatcta-tctcaattgaagaaa-atctagagtctatgtctattgtcatgaacaacacttttttgcggctgtaacggtgtttcgtcg 410  Q
    |||||||||| ||||||||||| ||| |||  || |||||||||||||||||||||  || ||||||||||  ||| |||||||||||||    
T  47363851 ttttcatctaatctcaattgaaaaaatatccggattctatgtctattgtcatgaacggcaattttttgcggtcgtatcggtgtttcgtcg 47363940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 244
Target Start/End: Complemental strand, 33049296 - 33049254
Alignment:
Q  202 gtcgcggtgtgaattaataacaacattgcacaactcttaaata 244  Q
    |||| ||||||||||||| | ||||||||||||||||||||||    
T  33049296 gtcgaggtgtgaattaatcaaaacattgcacaactcttaaata 33049254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 229
Target Start/End: Original strand, 35451056 - 35451093
Alignment:
Q  192 gattgccattgtcgcggtgtgaattaataacaacattg 229  Q
    |||||||||||| ||||||||||||||| |||||||||    
T  35451056 gattgccattgttgcggtgtgaattaatcacaacattg 35451093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 244
Target Start/End: Original strand, 39653454 - 39653498
Alignment:
Q  200 ttgtcgcggtgtgaattaataacaacattgcacaactcttaaata 244  Q
    |||| ||||||||||||||| |||| ||| |||||||||||||||    
T  39653454 ttgttgcggtgtgaattaatcacaatattccacaactcttaaata 39653498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 200 - 295
Target Start/End: Original strand, 11783404 - 11783509
Alignment:
Q  200 ttgtcgcggtgtgaattaataacaacattgcacaactcttaaat-atgatagt---------aacttaaactagagaaagatttggagttttaaactaga 289  Q
    |||||||  |||||| |||| ||||||||||||||||||||||| ||||||||         ||||||||| ||||| |||||||||||| |||||||||    
T  11783404 ttgtcgctttgtgaagtaattacaacattgcacaactcttaaataatgatagtaacataaagaacttaaacaagagatagatttggagttctaaactaga 11783503  T
Q  290 taagga 295  Q
     |||||    
T  11783504 caagga 11783509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 411
Target Start/End: Original strand, 11783552 - 11783643
Alignment:
Q  320 tgattttcatctatctcaattgaagaaaatcta--gagtctatgtctattgtcatgaacaacacttttttgcggctgtaacggtgtttcgtcgc 411  Q
    |||||||||||||||||||||||| ||||| |   |||||||| ||||||| ||||||   ||  |||||||||| ||||| ||||||||||||    
T  11783552 tgattttcatctatctcaattgaaaaaaatatccggagtctatttctattgccatgaaaggca--tttttgcggccgtaacagtgtttcgtcgc 11783643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 53527230 - 53527193
Alignment:
Q  207 ggtgtgaattaataacaacattgcacaactcttaaata 244  Q
    ||||||||||||| |||||||||||||||| |||||||    
T  53527230 ggtgtgaattaatcacaacattgcacaacttttaaata 53527193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 234
Target Start/End: Complemental strand, 75672 - 75596
Alignment:
Q  158 tcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtgaattaataacaacattgcacaa 234  Q
    |||||||||||||  |||||  ||||||| ||| ||||||  | |||||||||||||||||| | |||| |||||||    
T  75672 tcgcgatttcggctattacgtatgttgcgttactgattgcggtcgtcgcggtgtgaattaatcagaacaatgcacaa 75596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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