View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1114_low_37 (Length: 419)
Name: NF1114_low_37
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_low_37 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 44 - 411
Target Start/End: Complemental strand, 12652225 - 12651870
Alignment:
| Q |
44 |
aataccaccaattttgtctccaacttcctccgattgaaatcatagatagaggatactccctctaaggatgtctatttgctaaagtcaaatgaagataagt |
143 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||| | ||||||||||||||| |||| ||||| |
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| T |
12652225 |
aataccaccaattttgtctccaacttcctccgattgaaatcataga----gggt--------taaggatgtgtctttgctaaagtcaaacgaaggtaagt |
12652138 |
T |
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| Q |
144 |
ttgttacaaaaaatatctaattgataaagtcaaacgaccccatatcattatctaggcccaaccaatgacaaaattcattcaagttcacttgacaacgctc |
243 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12652137 |
ttgttacaaaaaatatctcattgataaagtcaaacgaccccatatcattatctaggcccaaccaatgacaaaattcattcaagttcacttgacaacgctc |
12652038 |
T |
|
| Q |
244 |
ctcccaagaagaaggcattacatcaccgttgagtttcctctaagagttacttctcaggctgtatatctcctaataattagggtcatacatatatattgga |
343 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
12652037 |
ctcccaagaagaaggcattacatcaccgttgagtttcctccaagagttacttctgaggctgtatatctcccaataattagggtcatacatatatattggc |
12651938 |
T |
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| Q |
344 |
acaccctcccaaaaatcatcattatcatcaaattccaagtccatctcccagaaagggctattcatctc |
411 |
Q |
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| T |
12651937 |
acaccctcccaaaaatcatcattatcatcaaattccaagtccatctcccagaaagggctattcatctc |
12651870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 44 - 411
Target Start/End: Complemental strand, 12647111 - 12646738
Alignment:
| Q |
44 |
aataccaccaattttgtctccaacttcctccgattgaaatcatagatagaggatactccctctaaggatgtctatttgctaaagtcaaatgaagataagt |
143 |
Q |
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| T |
12647111 |
aataccaccaattttttctccaactttctgcgattgaaatcatagatagatgatactccctctaaggatgtctctttgctaaagtcaaatgaaggtaagt |
12647012 |
T |
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| Q |
144 |
ttgttacaaaaaatatctaattgataaagtcaaacgaccccatatcattatctaggcccaaccaatgacaaaattcattcaagttcacttgacaacgctc |
243 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||| |
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| T |
12647011 |
ttgttacaaaaaatatctcattgataaagtcaaacgaccccatatcattatctaggttcaaccaatagcaaaattcattcaagttcacctgacaacgctc |
12646912 |
T |
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| Q |
244 |
ctcccaagaagaaggcat---ta---catcaccgttgagtttcctctaagagttacttctcaggctgtatatctcctaataattagggtcatacatatat |
337 |
Q |
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||||||||| |||||| || || |||| | ||||||||| ||||||||||||| ||||||||||||||| |||||| ||| |||||||||| | |
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| T |
12646911 |
ttcccaagaatcaggcataggtatatcaccaccatcaagtttcctccaagagttacttctgaggctgtatatctcccaataatcaggatcatacatattt |
12646812 |
T |
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| Q |
338 |
attggaacaccctcccaaaaatcatcattatcatcaaattccaagtccatctcccagaaagggctattcatctc |
411 |
Q |
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| T |
12646811 |
attggcacccccttccaaaaatcatcatcatcgtcaaaatccaagtccatctcccagaaagggctattcttctc |
12646738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 231
Target Start/End: Original strand, 12711996 - 12712072
Alignment:
| Q |
155 |
aatatctaattgataaagtcaaacgaccccatatcattatctaggcccaaccaatgacaaaattcattcaagttcac |
231 |
Q |
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||||||| ||||||||||||||| ||| | ||||||| | | |||| |||||||| |||||||||||||||||||| |
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| T |
12711996 |
aatatctcattgataaagtcaaatgacacaatatcataagatgggcctaaccaatggcaaaattcattcaagttcac |
12712072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 312
Target Start/End: Original strand, 12516863 - 12516901
Alignment:
| Q |
274 |
gagtttcctctaagagttacttctcaggctgtatatctc |
312 |
Q |
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| T |
12516863 |
gagtttcctccaagagttacttctaaggctgtatatctc |
12516901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 232
Target Start/End: Complemental strand, 37830714 - 37830624
Alignment:
| Q |
143 |
tttgttacaaaa-aatatctaattgataaagtcaaacgaccccatatcattatctaggcccaaccaatgacaaaattcattcaagttcact |
232 |
Q |
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|||||||||||| || |||| |||| |||||||||| ||| ||||||||| | | || |||||||||| || ||||||||||||||||| |
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| T |
37830714 |
tttgttacaaaagaacatctcattgttaaagtcaaatgacaccatatcatatttttggtccaaccaatggcaccattcattcaagttcact |
37830624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 231
Target Start/End: Complemental strand, 6117736 - 6117660
Alignment:
| Q |
155 |
aatatctaattgataaagtcaaacgaccccatatcattatctaggcccaaccaatgacaaaattcattcaagttcac |
231 |
Q |
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||||||| ||||||||||||||| ||| | ||||||| | | |||| ||| ||| |||||||||||||||||||| |
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| T |
6117736 |
aatatctcattgataaagtcaaatgacacaatatcatcagatgggcctaacatatggcaaaattcattcaagttcac |
6117660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 313
Target Start/End: Original strand, 22535511 - 22535549
Alignment:
| Q |
275 |
agtttcctctaagagttacttctcaggctgtatatctcc |
313 |
Q |
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||||||||| ||||||||||||| ||||||||||||||| |
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| T |
22535511 |
agtttcctccaagagttacttctaaggctgtatatctcc |
22535549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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